BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G10970.1
Length=1547
Score E
Sequences producing significant alignments: (Bits) Value
Ahg919906 jgi|Araly1|919906|scaffold_101187.1 1925 0.0
> Ahg919906 jgi|Araly1|919906|scaffold_101187.1
Length=1293
Score = 1925 bits (1042), Expect = 0.0
Identities = 1214/1294 (94%), Gaps = 23/1294 (2%)
Strand=Plus/Plus
Query 183 GAAGAAGAATAAACTCTTGTTCCCATGATCTTCGTCGATGTTCTTTGGAAATTGTTTCCT 242
||||||||| |||||||||||||||||||| |||||||||||||||||||| ||||||||
Sbjct 1 GAAGAAGAAGAAACTCTTGTTCCCATGATCATCGTCGATGTTCTTTGGAAACTGTTTCCT 60
Query 243 CTATACTCGTTTGGATCAGGAAGAGACTCTCTCTCAGAGTCCATTTTGCAGATCATTCCC 302
||||||||||||||||||| |||||| |||||||||||||||||||||||||| ||||||
Sbjct 61 CTATACTCGTTTGGATCAGAAAGAGATTCTCTCTCAGAGTCCATTTTGCAGATAATTCCC 120
Query 303 GAGACAATGGCTTCTTCTACCACTAAAATCCTCTGTGATGCTGGCGAATCAGACCTCTGT 362
||||||||||||||||||||||||||||||||||||||||| || || ||||||||||||
Sbjct 121 GAGACAATGGCTTCTTCTACCACTAAAATCCTCTGTGATGCCGGTGATTCAGACCTCTGT 180
Query 363 AGAGACGATTCTGCTGCATTTCTCCTTAAGTTTGTAGCCATTGCCTCCATTCTACTAGCT 422
||||||||||| ||||||||||| || || ||||||||||||||||||||||||||||||
Sbjct 181 AGAGACGATTCAGCTGCATTTCTGCTCAAATTTGTAGCCATTGCCTCCATTCTACTAGCT 240
Query 423 GGAGCTGCTGGTGTAGCCATACCTCTCATTGGCAGGAACCGCCGGTTTCTTCAAACCGAG 482
||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||
Sbjct 241 GGAGCTGCTGGTGTAGCCATACCTCTCATTGGCAGGAACCGTCGGTTTCTTCAAACTGAG 300
Query 483 GGAAATCTCTTTGTAGCTGCTAAAGCCTTTGCAGCTGGTGTCATACTCGCCACCGGCTTT 542
||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||
Sbjct 301 GGAAATCTCTTTGTAGCTGCTAAAGCCTTTGCAGCTGGTGTCATACTCGCCACTGGATTT 360
Query 543 GTCCATATGCTTGCAGGTGGCACAGAAGCTCTGAGTAATCCGTGTTTACCGGATTTTCCG 602
||||||||||||||||| ||||| ||||||||||||||||||||||||||||||| ||||
Sbjct 361 GTCCATATGCTTGCAGGCGGCACGGAAGCTCTGAGTAATCCGTGTTTACCGGATTATCCG 420
Query 603 TGGTCTAAGTTTCCCTTTCCCGGGTTCTTTGCAATGGTTGCTGCTTTAGCTACTCTGCTT 662
||||||||||||||||||||||| |||||||| ||||| |||||||||| ||||||||||
Sbjct 421 TGGTCTAAGTTTCCCTTTCCCGGTTTCTTTGCTATGGTGGCTGCTTTAGTTACTCTGCTT 480
Query 663 GTTGATTTCATGGGGACACAGTACTATGAGAGGAAGCAAGAGAGGAATCAGGCTGCTACT 722
|| |||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
Sbjct 481 GTGGATTTCATGGGGACTCAGTACTATGAGAGGAAGCAAGAGAGGAATCAGGCTGCTAGT 540
Query 723 GAAGCCGC------T--G-CTGGTAGTGAAGAGATTGCTGTTGTTCCTGTGGTTGGGGAA 773
||| |||| | | ||||| ||||||||| |||||||||||| ||||||||||||
Sbjct 541 GAAACCGCTGTTGTTGAGCCTGGTCGTGAAGAGACTGCTGTTGTTCCCGTGGTTGGGGAA 600
Query 774 AGAGTGACCGATAATAAAGTGTTTGGTGAAGAAGACGGTGGCGGGATTCACATTGTCGGC 833
|| || | |||||||||||| |||||||||||||||||||| |||||||||||||| |||
Sbjct 601 AGTGTCAACGATAATAAAGTATTTGGTGAAGAAGACGGTGGTGGGATTCACATTGTTGGC 660
Query 834 ATTCGTGCACATGCTGCTCACCATAGGCATAGTCACTCTAATAGTCATGGTACATGTGAT 893
|||| ||| |||||||||||||||||||| |||||||||||||| |||||||||||||||
Sbjct 661 ATTCATGCTCATGCTGCTCACCATAGGCACAGTCACTCTAATAGCCATGGTACATGTGAT 720
Query 894 GGACATGCTCATGGACATT--CAC--AC--GGACAT----A--TGCACGGGAATTCAGAT 941
||||||||||||||||||| ||| || |||||| | |||||||||||||||||
Sbjct 721 GGACATGCTCATGGACATTCACACGGACATGGACATGGACATGTGCACGGGAATTCAGAT 780
Query 942 GTTGAAAATGGAGCTAGGCATGTTGTTGTTTCTCAGATATTGGAGCTCGGGATTGTGTCG 1001
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 781 GTTGAAAATGGAGCTAGGCATGTTGTTGTTTCTCAGATATTGGAGCTTGGGATTGTGTCG 840
Query 1002 CACTCAATCATCATCGGTTTATCCCTGGGGGTATCACAGTCTCCATGCACGATCAGGCCT 1061
|||||||||||||||||||||||||| || ||||| ||||||||||||||||||||||||
Sbjct 841 CACTCAATCATCATCGGTTTATCCCTCGGAGTATCGCAGTCTCCATGCACGATCAGGCCT 900
Query 1062 CTTATTGCAGCTCTGTCATTTCACCAGTTCTTTGAAGGATTTGCGCTCGGAGGCTGCATC 1121
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 901 CTCATTGCAGCTCTGTCATTTCACCAGTTCTTTGAAGGATTTGCGCTCGGAGGCTGCATC 960
Query 1122 TCTCAGGCACAGTTCAGGAACAAATCAGCGACCATAATGGCTTGCTTCTTTGCGCTAACC 1181
||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||
Sbjct 961 TCTCAGGCACAGTTCAGGAACAAATCAGCAACCATAATGGCTTGCTTCTTCGCGCTAACC 1020
Query 1182 ACACC-ATTAGGGATCGGGATTGGAACTGCAGTGGCCTCATCTTTCAACTCGCATAGCCC 1240
||||| || ||||||||| |||||||| ||||||||||| ||||||||||||||||||||
Sbjct 1021 ACACCGAT-AGGGATCGGAATTGGAACAGCAGTGGCCTCGTCTTTCAACTCGCATAGCCC 1079
Query 1241 TGGAGCTTTGGTCACTGAGGGGATACTGGACTCGCTGTCAGCTGGAATACTGGTGTACAT 1300
||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 1080 TGGAGCTTTGGTCACCGAGGGGATACTGGACTCGCTGTCAGCTGGGATACTGGTGTACAT 1139
Query 1301 GGCTCTGGTGGACCTCATCGCAGCTGATTTTCTGAGTAAGAGGATGAGTTGTAATTTGAG 1360
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 1140 GGCTCTGGTGGACCTCATCGCAGCTGATTTTCTGAGTAAGAGGATGAGTTGTAATGTGAG 1199
Query 1361 GCTTCAAGTTGTGTCTTATGTAATGTTGTTCCTTGGAGCTGGACTTATGTCTGCTCTCGC 1420
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 1200 GCTTCAAGTTGTGTCTTATATAATGTTGTTCCTTGGAGCTGGACTTATGTCTGCTCTCGC 1259
Query 1421 CATTTGGGCTTAGCTCTTAGATTACATATTATCT 1454
| ||||||||||||| ||||||||||||||||||
Sbjct 1260 CGTTTGGGCTTAGCTTTTAGATTACATATTATCT 1293
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 57935262645
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5