BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G10980.1
Length=1915
Score E
Sequences producing significant alignments: (Bits) Value
Ahg471236 jgi|Araly1|471236|fgenesh2_kg.1__1190__AT1G10980.1 1365 0.0
> Ahg471236 jgi|Araly1|471236|fgenesh2_kg.1__1190__AT1G10980.1
Length=1653
Score = 1365 bits (739), Expect = 0.0
Identities = 978/1086 (90%), Gaps = 45/1086 (4%)
Strand=Plus/Plus
Query 746 AGTTCTACGCCTCCATGCTTTTGGCTTACGTGGTTCTTGGCCTAGTTTGGTTTCCACAAG 805
|||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||
Sbjct 600 AGTTCTACGCCTCCATGCTTTTGGCTTATGTGGTTCTTGGCCTACTTTGGTTTCCACAAG 659
Query 806 TTGCTCAGTATTGGAAAGATGGAATCCAGTTGCATAGTCATATCAACTTTGTAATTGCAT 865
|||||||||||||||| ||||||||||||||||| ||||||||| | | ||||||| ||
Sbjct 660 TTGCTCAGTATTGGAAGGATGGAATCCAGTTGCACGGTCATATCAGC-TGGTAATTGTAT 718
Query 866 TTACCATGGGTGAATTGGCCTTCCTCTACCTTGACTTCGTTTATCTCGACTCAGCTGGTA 925
||||||||||||||||||||||||| ||| ||||||||| ||||||||||||||||||||
Sbjct 719 TTACCATGGGTGAATTGGCCTTCCTGTACTTTGACTTCGCTTATCTCGACTCAGCTGGTA 778
Query 926 CAAGTCCTATGGAGGTTACAGTATGGGCAATAACCCTTTCTTCCATGAGGAAGGCACTCT 985
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 779 CAAGTCCTATGGAGGTTACAGTATGGGCAATAACCCTTTCTTCCATGAGGAAGGCACTCT 838
Query 986 CCCGGCTTCTACTGTTGGTCATATCTTCAGGGTTTGGGATAGTGAGACCTACCCTAGGTG 1045
||||||||||||||||||||||||||||||| | ||||||||||||||||||||| ||||
Sbjct 839 CCCGGCTTCTACTGTTGGTCATATCTTCAGGCTATGGGATAGTGAGACCTACCCTTGGTG 898
Query 1046 GCATAACATTGAAGATGCTTCTTATTGGTGTCTTATGCTTTGTTATAAGTGAATCCCTCG 1105
|||||||||||| ||||||||||||||||||| |||||||||||||||| ||||| ||||
Sbjct 899 GCATAACATTGAGGATGCTTCTTATTGGTGTCCTATGCTTTGTTATAAGCGAATCTCTCG 958
Query 1106 GGTTGGCTATGCAATTTGGGAACATCT-CTGAAAATGGAATGAATTACTTAATGCTCTCT 1164
|||||||||||||||||||||| || | ||||||||||||||| || | |||||||||||
Sbjct 959 GGTTGGCTATGCAATTTGGGAA-ATTTTCTGAAAATGGAATGACTTTCCTAATGCTCTCT 1017
Query 1165 TGGGCTATACTGGAAACTTGCTTTATCCAGTGGATTTTCAGATCCTTGTCGAAAACGCTT 1224
||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||
Sbjct 1018 TGGGCTATACTGGAAACTTGCTTTATCCAGTTGATTTTCAGATCCTTGTGGAAAACGCTT 1077
Query 1225 AAGAAGCTCAAGCTGAATAAGAGGAACATTACTAAGCTGCAGCTCTACAAGATGTTTGCA 1284
|||||||| ||||||||||||||||||||| ||||||||||||||||||||| |||||||
Sbjct 1078 AAGAAGCTTAAGCTGAATAAGAGGAACATTGCTAAGCTGCAGCTCTACAAGAAGTTTGCA 1137
Query 1285 ACTGTGCTTGTAATCATGGTTGTGCTCAGTTTTGCCTGGATTTATGTGGAGGTATATCTC 1344
||| ||||||||| |||| | ||||||| |||||||||| |||||||| |||||||| ||
Sbjct 1138 ACTATGCTTGTAACCATGATGGTGCTCAATTTTGCCTGGTTTTATGTGCAGGTATATGTC 1197
Query 1345 TACAGCTC-CTTGAGTCAGTTTTGGAAAGTGAAGTGGATTGTTCC-AACACTTTGGTACA 1402
|||| ||| || ||| |||||||| ||||||||||||| | ||| |||||||||||||
Sbjct 1198 TACAACTCTCTA-AGTGAGTTTTGGCAAGTGAAGTGGAT-GATCCCAACACTTTGGTAC- 1254
Query 1403 TC-CTTTCTTATGCAATGTTGGTACTGATTTGCCTCTTTTGGCCTCCATCGGAAAAACCA 1461
|| |||||||||||| | ||||||||||||||||||||||||||||||||||||||||||
Sbjct 1255 TCTCTTTCTTATGCACTATTGGTACTGATTTGCCTCTTTTGGCCTCCATCGGAAAAACCA 1314
Query 1462 ATGAGGTACCTATACGTAGCTGACATGGAGGAAGAGACTGAAGAAGAAGATGATCTCTCC 1521
|||||||||||||||||||||||||||| ||||||| |||||||||| ||||||||||
Sbjct 1315 ATGAGGTACCTATACGTAGCTGACATGGTGGAAGAGGCTGAAGAAGA---TGATCTCTCC 1371
Query 1522 ACTGCAGAAACCGGTATGAACGCAACAAAGGCTGAATA---CGA-GA-G-GAG-T--GAA 1572
|||||||||||||||||||| ||||||||||||| | ||| | | ||| | |||
Sbjct 1372 GTTGCAGAAACCGGTATGAACGTAACAAAGGCTGAAGATGGCGATGTTGAGAGGTATGAA 1431
Query 1573 AGGAAGACCCTGCTGGAAGCATTCATCCTATTGCTTGGGAATATACCAGGGGAGAAGTGA 1632
|||||||| || ||||||||||||||| |||||||||||||| |||||||||||| ||||
Sbjct 1432 AGGAAGACTCTTCTGGAAGCATTCATCATATTGCTTGGGAATTTACCAGGGGAGAGGTGA 1491
Query 1633 AACTCCCCATCTTACAAAGTTACCGTCCTTTTAGCTTAAGCTGCCTACTTCTCATCCTTT 1692
||| |||||||||||||||||||||| ||||||||| ||||||||| || |||||| ||
Sbjct 1492 AAC-CCCCATCTTACAAAGTTACCGTACTTTTAGCTAAAGCTGCCTGCTAGTCATCCATT 1550
Query 1693 TTCAGCTTAAGCTACTCCTAATCATCCTTTTAAACCTACGGCTTTAAGtttttttttAAC 1752
||||||||||||||||||||| | | | | | |||||||||||||||| |||
Sbjct 1551 TTCAGCTTAAGCTACTCCTAA-C--C-T---A--C----GGCTTTAAGTTTTTTTG-AAC 1596
Query 1753 TCATATAATCTTCTGCAGTAGACTTGACTTAATCGGATTTTCTGTTTCATGAACTTGTTG 1812
|| ||||||||||| | | | | | | ||||||||||||||||||||||||||||||
Sbjct 1597 TCCTATAATCTTCT-C--T-G-CA-G--T-AATCGGATTTTCTGTTTCATGAACTTGTTG 1647
Query 1813 GTAGTG 1818
||||||
Sbjct 1648 GTAGTG 1653
Score = 856 bits (463), Expect = 0.0
Identities = 539/575 (94%), Gaps = 8/575 (1%)
Strand=Plus/Plus
Query 136 TTGATTCACGCAGCTGACGGCTCGATTCACGACTACAACAACAGCGGAGGCTTCACCAAA 195
||||| |||||||||||||| ||||||||||| ||||||||| | || ||||||||||
Sbjct 34 TTGATCCACGCAGCTGACGGGTCGATTCACGAGTACAACAAC--C-AAGACTTCACCAAA 90
Query 196 ATCGCCAATGCTCGCTACTTCGTTGGTGGTTCTGAAGGAATCTATGGTTCTGAGTTTCTG 255
||||| |||||||||||||| |||||||||| |||||||||||||||||||||||||||
Sbjct 91 ATCGCAAATGCTCGCTACTTTTTTGGTGGTTCCGAAGGAATCTATGGTTCTGAGTTTCTG 150
Query 256 GATGTTCATCATGCTTCTTCTGATACACCTCTGCTCAAGGGAAACTCCTTCATCAGGTTT 315
|||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 151 GATGTTCATC---CTTCTTCTGATACACCTCTGCTCAAGGGGAACTCCTTCATCAGGTTT 207
Query 316 GATGATATCACTTTCGTAAGAACCAAGGAATCTGCTAGCAAGCAGAATTCTACTCTGGCA 375
|||||||||||||| ||||||||||||||||||||||||||||||||||| |||| ||
Sbjct 208 GATGATATCACTTTTGTAAGAACCAAGGAATCTGCTAGCAAGCAGAATTCCACTCAGG-T 266
Query 376 G-CTGCAGGCTTGGTGGAAGCGATACTGTTTGAGGTGAAGCAGCGAGATAGAGTTGGTGG 434
| ||||||||||||| |||||||||||||||||||||||||||| ||| |||||||||||
Sbjct 267 GACTGCAGGCTTGGTTGAAGCGATACTGTTTGAGGTGAAGCAGCAAGACAGAGTTGGTGG 326
Query 435 ATCTTTTTTCAAATCTGAGGACATGTGCTGTACGCCAAAACTTGCGGATGCTGGTTCCTG 494
||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||
Sbjct 327 ATCTTTTTTCAAATCTGAGGACATGTGTTGTACGCCAAAACTTGCAGATGCTGGTTCCTG 386
Query 495 CAATCTTGGAGAGGTTATGATTAGTGCAGATCCTAATGATCCTGAATGGCCTAAGCGGAT 554
||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 387 CAAACTTGGCGAGGTTATGATTAGTGCAGATCCTAATGATCCTGAATGGCCTAAGCGGAT 446
Query 555 TCCCACTTTTTTCAAAAGGGGTGAGGAAGAAGTGAAGATGTCTCCGGAAGCTGTCATTAT 614
|||||||||||||||||||||||||||||| || |||||||||||||||||||| |||||
Sbjct 447 TCCCACTTTTTTCAAAAGGGGTGAGGAAGAGGTAAAGATGTCTCCGGAAGCTGTGATTAT 506
Query 615 CAAGAAAACTGGATTGTACACTGTTTACTTCATGACATGTGATCCGGAATTGGATGGCGC 674
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 507 AAAGAAAACTGGATGGTACACTGTTTACTTCATGACATGTGATCCGGAATTGGATGGCAC 566
Query 675 AACAATCAGAGGAAGAACAGTTTGGAAGAACAGAG 709
||||||||||||||||||||||||||||||||||
Sbjct 567 CACAATCAGAGGAAGAACAGTTTGGAAGAACAGAG 601
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 71952472805
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5