BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G11000.1
Length=1971
Score E
Sequences producing significant alignments: (Bits) Value
Ahg919908 jgi|Araly1|919908|scaffold_101189.1 2883 0.0
> Ahg919908 jgi|Araly1|919908|scaffold_101189.1
Length=1754
Score = 2883 bits (1561), Expect = 0.0
Identities = 1699/1764 (96%), Gaps = 15/1764 (1%)
Strand=Plus/Plus
Query 52 GAAAAGT-TCCTCGCCGGAGATGGAGCATATGATGAAAGAAGGAAGGTCTCTT-GCAGAG 109
||||| | ||||||||||||||||||||||||||||||||||| |||||| || |||||
Sbjct 2 GAAAA-TCTCCTCGCCGGAGATGGAGCATATGATGAAAGAAGGGAGGTCT-TTGGCAGAA 59
Query 110 ACGCCGACTTACTCTGTTGCTTCGGTTGTTACTGTTTTGGTCTTTGTTTGCTTTCTCGTT 169
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 60 ACGCCGACTTACTCTGTTGCTTCGGTTGTTACTGTTTTGGTCTTTGTTTGCTTTCTCGTT 119
Query 170 GAACGCGCCATTTACAGATTTGGAAAGTGGTTAAAGAAGACTAGAAGAAAGGCACTTTTT 229
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 120 GAACGCGCCATTTACAGATTTGGAAAGTGGTTAAAGAAGACTAGAAGAAAGGCACTTTTT 179
Query 230 ACTTCACTTGAGAAAATGAAAGAGGAGTTGATGTTGCTGGGACTTATATCACTTCTGTTG 289
||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||
Sbjct 180 ACTTCACTTGAGAAAATGAAAGAGGAGTTGATGTTGCTGGGACTTATATCACTGCTCTTG 239
Query 290 TCACAAAGCGCGAGATGGATTTCAGAAATCTGTGTTAACTCTTCCCTTTTCAATAGTAAA 349
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 240 TCACAAAGCGCAAGATGGATTTCAGAAATCTGTGTTAACTCTTCCCTTTTCAATAGTAAA 299
Query 350 TTCTACATTTGCTCTGAAGAGGACTATGGAATCCATAAGAAAGTTCTTCTGGAACACACC 409
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 300 TTCTACATTTGCTCTGAAGAGGACTATGGAATCCATAAGAAAGTTCTTCTGGAACACACC 359
Query 410 TCTTCTACAAACCAGAGCTCCTTACCTCATCATGGAATACATGAAGCCTCTCATCAATGT 469
|||||||| |||||||| |||||||||||||||||||| |||||||||||||||||||||
Sbjct 360 TCTTCTACTAACCAGAGTTCCTTACCTCATCATGGAATGCATGAAGCCTCTCATCAATGT 419
Query 470 GGTCATGGCCGTGAACCATTTGTGTCGTATGAGGGACTCGAGCAACTCCTAAGATTCTTA 529
||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||
Sbjct 420 GGTCATGGCCGTGAACCATTTGTATCCTATGAGGGACTCGAGCAACTCCTAAGATTCTTA 479
Query 530 TTCGTCCTGGGTATCACTCATGTTCTATACAGTGGCATTGCCATTGGTTTAGCCATGAGC 589
|| ||||||||||| ||||||||||| || ||||||||||||||||||||||||||||||
Sbjct 480 TTTGTCCTGGGTATTACTCATGTTCTGTATAGTGGCATTGCCATTGGTTTAGCCATGAGC 539
Query 590 AAGATTTACAGTTGGAGAAAATGGGAAGCCCAAGCGATCATAATGGCTGAATCAGATATC 649
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 540 AAGATTTACAGTTGGAGAAAATGGGAAGCCCAAGCGATCATAATGGCTGAATCTGATATC 599
Query 650 CACGCAAAGAAGACCAAGGTGATGAAGCGTCAGTCTACATTTGTTTTCCATCATGCCTCT 709
|| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 600 CATGCAAAGAAGACCAAGGTGATGAAGCGTCAGTCTACATTTGTCTTCCATCATGCCTCT 659
Query 710 CATCCTTGGAGTAACAATCGTTTTCTCATTTGGATGCTTTGTTTCCTGCGGCAATTTAGA 769
||||||||||||||||||||||||||||| |||||||| |||||||||||||| ||||||
Sbjct 660 CATCCTTGGAGTAACAATCGTTTTCTCATCTGGATGCTCTGTTTCCTGCGGCAGTTTAGA 719
Query 770 GGCTCCATACGAAAGTCTGACTACTTCGCACTTCGGTTAGGTTTCCTCACTAAACATAAT 829
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 720 GGCTCCATACGAAAGTCTGACTACTTCGCTCTTCGGTTAGGTTTCCTCACTAAACATAAT 779
Query 830 TTGCCATTTACATACAACTTCCATATGTATATGGTACGGACGATGGAAGATGAGTTTCAT 889
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 780 TTGCCATTTACATATAACTTCCATATGTATATGGTACGGACGATGGAAGATGAGTTTCAT 839
Query 890 GGCATTGTTGGAATTAGCTGGCCACTTTGGGTTTACGCTATAGTATGCATCTGCATAAAT 949
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 840 GGCATTGTTGGAATTAGCTGGCCACTTTGGGTTTACGCTATAGTATGCATCTGCATAAAT 899
Query 950 GTTCATGGCCTGAATATGTACTTTTGGATATCATTCGTTCCTGCCATTCTTGTCATGTTG 1009
|||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||
Sbjct 900 GTTCATGGCCTGAATATGTACTTTTGGATATCATTCATCCCTGCCATTCTTGTCATGTTG 959
Query 1010 GTTGGAACCAAACTTGAGCATGTTGTCTCCAAGCTTGCTCTCGAGGTTAAGGAGCAGCAG 1069
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 960 GTTGGAACCAAACTTGAGCACGTTGTCTCCAAGCTTGCTCTCGAGGTTAAGGAGCAGCAG 1019
Query 1070 ACAGGCACATCTAATGGGGCTCAAGTCAAACCACGTGATGGGCTCTTCTGGTTTGGGAAA 1129
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 1020 ACAGGCACATCTAATGGGGCTCAAGTCAAACCACGTGATGGACTCTTCTGGTTTGGGAAA 1079
Query 1130 CCAGAAATTCTGCTACGGTTGATACAATTTATCATTTTTCAGAATGCATTTGAAATGGCA 1189
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1080 CCAGAGATTCTGCTACGGTTGATACAATTTATCATTTTTCAGAATGCATTTGAAATGGCA 1139
Query 1190 ACATTCATCTGGTTCTTGTGGGGAATCAAGGAAAGATCTTGCTTCATGAAGAACCATGTG 1249
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 1140 ACATTCATCTGGTTCTTGTGGGGAATCAAGGAAAGATCTTGTTTCATGAAGAACCATGTG 1199
Query 1250 ATGATATCAAGCCGGCTAATTTCTGGGGTTCTCGTTCAGTTCTGGTGTAGTTATGGCACT 1309
|||||||||||| | || ||||||||||||||||||||||||||||||||||||||||||
Sbjct 1200 ATGATATCAAGCAGACTGATTTCTGGGGTTCTCGTTCAGTTCTGGTGTAGTTATGGCACT 1259
Query 1310 GTGCCTCTCAATGTAATCGTTACTCAGATGGGATCTCGGCATAAGAAAGCTGTGATAGCA 1369
||||| ||||||||||| || |||||||||||||||||||| ||||||||||||||||||
Sbjct 1260 GTGCCCCTCAATGTAATTGTCACTCAGATGGGATCTCGGCACAAGAAAGCTGTGATAGCA 1319
Query 1370 GAGAGCGTAAGAGACTCACTTCACAGTTGGTGCAAGAGAGTGAAAGAGAGGTCTAAGCAC 1429
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 1320 GAGAGCGTAAGAGACTCACTTCACAGCTGGTGCAAGAGAGTGAAAGAGAGGTCTAAGCAC 1379
Query 1430 ACGAGATCAGTGTGTTCCCTTGACACAGCAACAATAGACGAGAGAGACGAGATGACAGTG 1489
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1380 ACGAGATCAGTGTGTTCCCTTGACACAGCAACAATAGACGAGAGAGACGAGATGACAGTG 1439
Query 1490 GGGACATTGTCTAGGAGCTCATCGATGACTTCACTGAATCAGATTACCATAAACTCCATA 1549
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1440 GGGACATTGTCTAGGAGCTCATCGATGACTTCACTGAATCAGATTACCATAAACTCCATA 1499
Query 1550 GACCAAGCAGAGTCTATATTCGGAGCAGCAGCTTCATCCAGCAGTCCTCAAGATGGATAC 1609
|||||||||||||| ||||| |||||||||||||| || ||||||||||||||||| ||
Sbjct 1500 GACCAAGCAGAGTCCATATTTGGAGCAGCAGCTTCTTCGAGCAGTCCTCAAGATGGGTAT 1559
Query 1610 ACGTCGAGGGTGGAAGAATATCTGTCTGAAACATACAATAACATCGGTTCGATACCGCCT 1669
|| ||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||
Sbjct 1560 ACCTCGAGGGTGGAAGAATATCTGTCTGAAACATACAATAACATTGGTTCGATGCCGCCT 1619
Query 1670 TTAAACGATGAGATTGAGATTGAGATTGAAGGTGAAGAAGATAATGGAGGGAGAG-GAAG 1728
||||||||||||||||||||||||||||| ||||||||||||||||| |||||| || |
Sbjct 1620 CTAAACGATGAGATTGAGATTGAGATTGAAAGTGAAGAAGATAATGGAAGGAGAGAGA-G 1678
Query 1729 TGGGAGTGATGAGAATAACGGTGATGCTGGAGAAACACTTCTTGAGTTGTTTAGGAGGAC 1788
||||||||| |||||||| || | ||||||||||||||||||||||||||||||
Sbjct 1679 TGGGAGTGAGGAGAATAA---TG--G----AGAAACACTTCTTGAGTTGTTTAGGAGGAC 1729
Query 1789 TTGATCTTGTTTCTGCTTTTAGAA 1812
|||||||||||||| |||||||||
Sbjct 1730 TTGATCTTGTTTCTACTTTTAGAA 1753
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 74085526525
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5