BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G11020.1
Length=1417
Score E
Sequences producing significant alignments: (Bits) Value
Ahg471237 jgi|Araly1|471237|fgenesh2_kg.1__1191__AT1G11020.1 1997 0.0
> Ahg471237 jgi|Araly1|471237|fgenesh2_kg.1__1191__AT1G11020.1
Length=1377
Score = 1997 bits (1081), Expect = 0.0
Identities = 1304/1403 (93%), Gaps = 49/1403 (3%)
Strand=Plus/Plus
Query 35 AATAAAGAAGCTTTCGTTTCTCTCTCGCATTGACCCTTCTTCTCCAGTTTTATGTTTTGC 94
||||||||||||||| ||||||||||||||||| | || |||| | ||||||
Sbjct 1 AATAAAGAAGCTTTCTTTTCTCTCTCGCATTGA-----C--CT----TTTT-T-TTTTGC 47
Query 95 CTCTCTCCCACTTCTGTAAATAATCTTCTCACATCCCCGCACGATTATTCTCTAGCCGAT 154
|||||| ||||||||| |||||||||||||||||||||||||||||||| |||||||
Sbjct 48 CTCTCT-CCACTTCTG----TAATCTTCTCACATCCCCGCACGATTATTCTCCAGCCGAT 102
Query 155 CAACGAACACAGAGACGCTAATGTATTTGACTCGATTCGAATCATTAGTCCTCTAATCAC 214
|||||||||||||||||||||||| ||||| |||||||||||| || |||||| |||||
Sbjct 103 CAACGAACACAGAGACGCTAATGTGTTTGATTCGATTCGAATCCTTCTTCCTCTGATCAC 162
Query 215 ACCGATTGATTTCCACCCACAGA---TTT-CTT-GTCTG-AAATTTAGGGTTAGCGAAGG 268
||||||||||||||||||||||| ||| ||| |||| ||||||||||||||||||||
Sbjct 163 ACCGATTGATTTCCACCCACAGATTTTTTCCTTCTTCTGAAAATTTAGGGTTAGCGAAGG 222
Query 269 TTTGGATCAATGATGCAAGGTGAAGTACAATTGCAGCCACCGGATTCACAGAAACTAAGT 328
||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 223 TTT-GATCAATGATGCAAGGTGAAGTACAATTGCAGCCACCGGATTCACAAAAACTAAGT 281
Query 329 GATTCCGCTCCTTTGTTAGGAGATCACACCAATTCTTC---TTCGGCGTC-TC--C-T-T 380
||||||||||||||||||||||| |||||||||||||| ||| | || || | | |
Sbjct 282 GATTCCGCTCCTTTGTTAGGAGACCACACCAATTCTTCATTTTCATCTTCTTCGGCGTCT 341
Query 381 -CTGCTGCGTCTGTGGTGGCAGGAAATAGCGATGAGATAAAGGCTGAAGAAGATTTAGAG 439
|| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 342 CCTTCTGCGTCTGTGGTGGCAGGAAATAGCGATGAGATAAAGGCT---GAAGATTTAGAG 398
Query 440 AACGATGCTTCTTCAGCTCCTTGTTGTCGTATTTGTTTGGAGGACGATAGTGAATTGTTA 499
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 399 AACGATGCTTCTTCAGCTCCTTGTTGTCGTATTTGTTTGGAGGACGATAGTGAATTGTTA 458
Query 500 GGCGATGAATTGATTTCACCTTGTATGTGTAAAGGCACTCAACAATTCGTGCATCGCTCA 559
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 459 GGCGATGAATTGATATCACCTTGTATGTGTAAAGGCACTCAACAATTCGTGCATCGTTCA 518
Query 560 TGTCTCGATCATTGGCGATCGGTTAAAGAAGGTTTTGCTTTCTCTCACTGTACTACTTGC 619
||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||
Sbjct 519 TGTCTCGATCATTGGCGATCGGTCAAAGAAGGTTTTGCTTTCTCTCACTGCACTACTTGC 578
Query 620 AAAGCACAGTTTCATCTGAGAGTCGAACCCTTTGAGGATAACAATTCGTGGCGTAGAAAA 679
||||||||||||||||||||||||||||| ||||||||||||||||| |||||| |||||
Sbjct 579 AAAGCACAGTTTCATCTGAGAGTCGAACCTTTTGAGGATAACAATTCTTGGCGTCGAAAA 638
Query 680 GCTAAATTCAGACTCTTTGTCGCAAGAGATGTGCTTTTGGTTTTCTTAGCTGTGCAGACT 739
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 639 GCTAAATTCAGACTCTTTGTCGCAAGAGATGTGCTTTTGGTATTCTTAGCTGTGCAGACT 698
Query 740 GTTATCGCTGTGATGGCCGGATTCGCATATATGATGGACAAAGACGGAGAGTTTCGCAAC 799
||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 699 GTTATTGCTGTGATGGCCGGATTGGCATATATGATGGACAAAGACGGAGAGTTTCGCAAC 758
Query 800 TCTTTCAACGATGATTGGGATCGTATTTTGTCGAAACATCCCATCCCGTTTTATTACTGC 859
|||||||| ||||||||||||||||| |||||||||||||||||||| ||||||||||||
Sbjct 759 TCTTTCAATGATGATTGGGATCGTATATTGTCGAAACATCCCATCCCCTTTTATTACTGC 818
Query 860 ATTGGGGTTATATCCTTCTTTGTGCTGACTGGATTTCTTGGAATCATTCTACATTGCTCT 919
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 819 ATTGGGGTTATATCCTTCTTTGTGCTGACTGGATTTCTTGGAATCATTCTGCATTGCTCT 878
Query 920 GCTCTCAACGGTAATGACCCGAGGATGGCTGGATGCCAGAACTGCTGTTATGGATGGGGT 979
||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 879 GCTATTAACGGTAATGACCCGAGGATGGCTGGATGCCAGAACTGCTGTTATGGATGGGGT 938
Query 980 GTCTTGGATTGTTTCCCTGCTTCAATGGAAGCTTGTTTCGCTCTTGTTGTTGTTTTTGTC 1039
|||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||
Sbjct 939 GTCTTGGATTGTTTCCCTGCTTCAATGGAAGCATGTTTCGCTCTTGTTGTTGTCTTTGTC 998
Query 1040 GTCATCTTTGCCATTCTTGGTTTAGCGTATGGGTTTCTTGCTGCAACTATGGCTATCCAA 1099
|||||||| |||||||||||| |||| ||||||||||||||||| |||||||||||||||
Sbjct 999 GTCATCTTCGCCATTCTTGGTCTAGCTTATGGGTTTCTTGCTGCTACTATGGCTATCCAA 1058
Query 1100 AGGATATGGCAGAGACATTACCATATTCTCACCAAGCGAGAGCTCACAAAGGAGTACATT 1159
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1059 AGGATATGGCAGAGACATTACCATATTCTCACCAAGCGAGAGCTCACAAAAGAGTACATC 1118
Query 1160 GTGGAGGATCTTCACGGAAGTTACACTCCCCCGAAGCTGGATGCAGAGCACGAAGGAAGA 1219
|||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 1119 GTGGAGGATCTTCATGGAAGTTACACTCCCCCGAAGCTGGATGCGGAGCACGAAGGAAGA 1178
Query 1220 CTGAAAATGCTGAAACTTCTGTGACCGTGTTTT-TT-AACTGTCAAATAAAGGTTGTAAG 1277
||||||||||||||||||||||||||||||||| || |||||||||||||||||| || |
Sbjct 1179 CTGAAAATGCTGAAACTTCTGTGACCGTGTTTTCTTTAACTGTCAAATAAAGGTTCTATG 1238
Query 1278 GAGTTTCGGGCACATGAGAGAGACGAGTTCA-TACGTATAT----GTTCACAGAG-TGTC 1331
||||||||||||||| |||||||| |||||| ||| || || |||||||||| ||||
Sbjct 1239 GAGTTTCGGGCACATTAGAGAGACAAGTTCACTACATACATCTTTGTTCACAGAGATGTC 1298
Query 1332 TTTCTTTTCTTTATCATGCGATGAAAAGTACCTAATGGATATTTTGTCTTATATATATTT 1391
|||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||
Sbjct 1299 TTTCTTTTCTTTATCATG-GATGAAAAGTACCTAATGGATATGTTGTCTTATATATATTT 1357
Query 1392 ATTATAATTATGGTATGAGGTGA 1414
|| || | ||| ||||||||||
Sbjct 1358 ATGAT--T-ATGATATGAGGTGA 1377
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 52983530795
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5