BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G11040.1
Length=1317
Score E
Sequences producing significant alignments: (Bits) Value
Ahg910850 jgi|Araly1|910850|Al_scaffold_0001_1104 2034 0.0
Ahg894468 jgi|Araly1|894468|Al_scaffold_0006_2464 56.5 5e-07
> Ahg910850 jgi|Araly1|910850|Al_scaffold_0001_1104
Length=1317
Score = 2034 bits (1101), Expect = 0.0
Identities = 1245/1317 (95%), Gaps = 0/1317 (0%)
Strand=Plus/Plus
Query 1 ATGGGGACTCCTCGTTCGCCGGCTACAGATTTCTTTGGAATTTCCAAGACAGCATGCAAA 60
||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||
Sbjct 1 ATGGGGACTCCTCGTTCGCCGGCGACAGATTTCTTCGGAATTTCCAAGACAGCATGCAAA 60
Query 61 GCCTACAAGTCCCTCGTCACCAAATTGCACCCTCTTTCTTCTCATCGCAAATCCGAATCC 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 GCCTACAAGTCCCTCGTCACCAAATTGCACCCTCTTTCTTCTCATCGCAAATCCGAATCC 120
Query 121 CATTCCGATGCCGATTCCGCAATCCACCGGAGATATTTGGAGGAGAAATTTGCGGAGGAG 180
|||||||| |||||||||||||| |||||||| ||| | |||||||||||||||||||||
Sbjct 121 CATTCCGACGCCGATTCCGCAATTCACCGGAGGTATCTAGAGGAGAAATTTGCGGAGGAG 180
Query 181 GATGATCTCATTGCTGCTCGGAGAGGTCTCCGGCTACAGAGCATGGACGATAGTAGCGTC 240
||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||
Sbjct 181 GATGATCTCATTGCTGCTCGGAGAGGTCTCCGGCTACAGAGCATGGACGATAGCACCGTC 240
Query 241 TTCAAACGTCGTTCTTCTCTGTTATCAAACTCAAGTAGCCGCCGTAGCCACACGCCGCAA 300
||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 241 TTCAAACGTCGATCTTCTCTGTTATCAAACTCAAGTAGCCGCCGCAGCCACACGCCGCAA 300
Query 301 GCTAGACCAACGTACCTCTCTTCCTCCGCTTCTTCCAACCGCCGTTCTGCTTTCTCAAGA 360
||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 301 GCTAGACCAACCTACCTCTCTTCCTCCGCTTCTTCCAATCGCCGTTCTGCTTTCTCAAGA 360
Query 361 AGCACAAGCCGTAGAGACGAAGGCAGCAGCCACAGCGGAGTGAGAAGCCACGGTTTGAAA 420
||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 361 AGCGCAAGCCGTAGAGACGAAGGCAGCAGCCACGGCGGAGTGAGAAGCCACGGTTTGAAA 420
Query 421 TCACGTCCCATCTCAAACAACACCAGTCCGATGACGTCACCTTTCACGAGTCCTAGAGGA 480
|||||||| | || |||||| | |||||||||||||| |||||||||||||| |||||
Sbjct 421 TCACGTCCGGTATCGAACAACGCAAGTCCGATGACGTCGCCTTTCACGAGTCCGAGAGGG 480
Query 481 AAAGATCAAACCTTAGGTGATTTATTCGGATCTGTAAAGAAACTTTCGTCTCCTACAAGC 540
|||||||||||||||||||||||||| || |||||| ||||||||||||||||| |||||
Sbjct 481 AAAGATCAAACCTTAGGTGATTTATTTGGCTCTGTACAGAAACTTTCGTCTCCTCCAAGC 540
Query 541 AATAGTCCGATAAACGGCGTCAAACAATCTTCTCCTTCGTCGATTTCGAAGAGTGCTAGC 600
||||||||||| |||||||| ||||| |||||||||||||||||||| ||||| ||||||
Sbjct 541 AATAGTCCGATTAACGGCGTGAAACAGTCTTCTCCTTCGTCGATTTCTAAGAGCGCTAGC 600
Query 601 AAGAGAGATAAGGATGAAAGAGGCTCTACGAGCTCGGCGACATCGACCTCTCTGCCATAT 660
||||||||||| ||||| ||| ||||| ||||||||||||| ||||| |||||||| | |
Sbjct 601 AAGAGAGATAAAGATGAGAGATGCTCTGCGAGCTCGGCGACGTCGACGTCTCTGCCGTTT 660
Query 661 TCAAAGAGTAAGAGCACGAGGGATACGGCTGGATCAATTGCAAAGAGTATAAGCCGGAGA 720
|| |||||||||||||| |||||| |||||||||||||||| |||||||||||||||||
Sbjct 661 TCTAAGAGTAAGAGCACTAGGGATCCGGCTGGATCAATTGCGAAGAGTATAAGCCGGAGG 720
Query 721 AGCACAACGCCGATAGTGTTTTCGCAGTCTACACCGCCGAAAAAACCACCAGCTGTGGAG 780
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 721 AGCACAACGCCGATAGTGTTTTCGCAGTCTACACCGCCGAAAAAACCGCCAGCTGTGGAG 780
Query 781 AAAAAGCTTGAGTGTACGTTAGAAGAACTCTGCCATGGTGGAGTCAAGAACATCAAGATC 840
|||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||
Sbjct 781 AAAAAGCTTGAGTGTACGTTGGAAGAACTCTGCCATGGTGGAGTGAAGAACATCAAGATC 840
Query 841 AAAAGAGACATTATTACCGATGAAGGATTGATTATGCAACAAGAAGAAATGTTAAGAGTG 900
||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 841 AAAAGAGACATCATTACCGATGAAGGATTGATTAAGCAACAAGAAGAAATGTTAAGAGTG 900
Query 901 AATATCCAACCGGGATGGAAGAAAGGGACGAAGATCACATTCGAAGGAGTAGGGAACGAA 960
|| || ||||||||||||| |||||||| ||||||||||||||||||||||||||||||
Sbjct 901 AACATTAAACCGGGATGGAAAAAAGGGACAAAGATCACATTCGAAGGAGTAGGGAACGAA 960
Query 961 AAACCGGGCTATCTACCTGAAGATATTACATTTGTGGTTGAAGAAAAGAGACACCCTTTG 1020
|||||||| ||||||||||||||||| ||||| |||||||||||||||||||||||||||
Sbjct 961 AAACCGGGATATCTACCTGAAGATATCACATTCGTGGTTGAAGAAAAGAGACACCCTTTG 1020
Query 1021 TTCAAAAGACGTGGAGACGACTTAGAGATTGCGGTAGAGATTCCTCTTTTAAAGGCTTTA 1080
|| |||||||| ||||| ||||||||||||||||| |||||||||||| |||||||||||
Sbjct 1021 TTTAAAAGACGCGGAGATGACTTAGAGATTGCGGTCGAGATTCCTCTTGTAAAGGCTTTA 1080
Query 1081 ACAGGATGCAAACTCTCGGTGCCACTATTGAGCGGAGAGTCAATGTCGATAACCGTGGGA 1140
|||||||| |||||||||||||||||||||||||| |||||||||||||||||||| |||
Sbjct 1081 ACAGGATGTAAACTCTCGGTGCCACTATTGAGCGGCGAGTCAATGTCGATAACCGTAGGA 1140
Query 1141 GATGTGATCTTCCACGGATTTGAGAAGGCGATAAAAGGTCAAGGTATGCCAAATGCTAAA 1200
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1141 GATGTGATCTTCCACGGATTTGAGAAGGCGATAAAAGGTCAAGGTATGCCAAATGCTAAA 1200
Query 1201 GAAGAAGGTAAGCGAGGGGATTTGAGAATAACGTTTTTAGTGAATTTCCCGGAGAAGTTG 1260
||||||||||||||||| ||||||| |||||||||| |||||||||||||||| ||||||
Sbjct 1201 GAAGAAGGTAAGCGAGGAGATTTGAAAATAACGTTTCTAGTGAATTTCCCGGAAAAGTTG 1260
Query 1261 AGTGAAGAACAACGATCAATGGCCTATGAGGTGTTGAAAGATTGTTCTTGGGCATAA 1317
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 1261 AGTGAAGAACAACGATCAATGGCCTATGAGGTTTTGAAAGATTGTTCTTGGGCATAA 1317
> Ahg894468 jgi|Araly1|894468|Al_scaffold_0006_2464
Length=1044
Score = 56.5 bits (30), Expect = 5e-07
Identities = 30/30 (100%), Gaps = 0/30 (0%)
Strand=Plus/Plus
Query 908 AACCGGGATGGAAGAAAGGGACGAAGATCA 937
||||||||||||||||||||||||||||||
Sbjct 647 AACCGGGATGGAAGAAAGGGACGAAGATCA 676
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 49254808764
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5