BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G11050.1
Length=2282
Score E
Sequences producing significant alignments: (Bits) Value
Ahg471239 jgi|Araly1|471239|fgenesh2_kg.1__1193__AT1G11050.1 2972 0.0
> Ahg471239 jgi|Araly1|471239|fgenesh2_kg.1__1193__AT1G11050.1
Length=2011
Score = 2972 bits (1609), Expect = 0.0
Identities = 1800/1891 (95%), Gaps = 17/1891 (1%)
Strand=Plus/Plus
Query 5 ATGCC-TAACTCGATTCTCTTTCTTCTTCTTTCA-------T-TCC-TGTATCTCACAAA 54
||||| ||| ||||||||||||||||||||||| | ||| |||||||| |||
Sbjct 1 ATGCCGAAAC-CGATTCTCTTTCTTCTTCTTTCACTCCTCTTCTCCTTGTATCTCTCAAC 59
Query 55 CTGCGTTGCTCAATCTCCATCACAAACTTGTCCTTTAGATTTCTCTCATGTCCTAACAAT 114
||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 60 CTGCGTTGCTCAATCGCCATCACCAACTTGTCCTTTAGATTTCTCTCATGTCCTAACAAT 119
Query 115 CCCATGGAACACAACAGATTGTCAAAAG-TCCGACAAATCAGCCGATAGCAAGAACAGTT 173
|||||||||||||||||| |||| ||| | |||||||||||| || |||||||||||||
Sbjct 120 CCCATGGAACACAACAGACTGTC-GAAGCTACGACAAATCAGCAGACAGCAAGAACAGTT 178
Query 174 GTTGCCAATCTCTTTTAACTCTAATCGGAATCCCTCTAGCTCATCGTCTCAAACAAACTT 233
||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 179 GTTGCCAATCTGTCTTAACTCTAATCGGAATCCCTCTAGCTCATCGTCTCAAACAAACTT 238
Query 234 CCAATTTCCGTCTCCCAAATCTCGCTACTTCAATCTCTTGTCTCAACAATCTCCAAACGA 293
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 239 CCAATTTCCGTCTCCCAAATCTCGCTACTTCAATCTCTTGTCTCAACAACCTCCAAACGA 298
Query 294 AGCTTAGTTCACTCTCTCTATCTTCGAATCTCACCTCTCTCTGTTTCGATCCGAATCAGT 353
|||||| ||||||||||||||||||||||||||| || |||||||||||||||||||| |
Sbjct 299 AGCTTAATTCACTCTCTCTATCTTCGAATCTCACTTCCCTCTGTTTCGATCCGAATCAAT 358
Query 354 TCGTCATCAATAACGAAACCTGTGCTGGAATCCAAACGACTCAAGATTGGGTATCTCGTC 413
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 359 TCGTCATCAATAACGAAACCTGTGCTGGAATCCAAACGACTCAAGATTGGGTCTCTCGTC 418
Query 414 TCGGTCCATCTACGGCGCTTGACTCCGCCTGTAGCAGTGGTCTCACTGATCTAACGCGAT 473
| ||||| || ||||||||||| || || ||||||||||||||||| ||||| |||||||
Sbjct 419 TTGGTCCCTCGACGGCGCTTGATTCTGCTTGTAGCAGTGGTCTCACCGATCTCACGCGAT 478
Query 474 GCGACGCTTGCGTGGCGGCTGGGTTTAGGGTTCAAAAACAGCTCATCACTTTGGACGGTA 533
|||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||
Sbjct 479 GCGACGCTTGCGTGGCGGCTGGGTTTAGGGTTCAGAAACAGCTGATCACTTTGGACGGTA 538
Query 534 ATAGCTCTCACGGTGTTTATTGTTACCATTTTG-TGGTTAC-TTACGCTGCTGGTATTGT 591
|||||||||||||| |||||||||||||||| | | ||| | ||||||||||||||||||
Sbjct 539 ATAGCTCTCACGGTCTTTATTGTTACCATTTCGCT-GTT-CTTTACGCTGCTGGTATTGT 596
Query 592 TAACAAGAAAGGACCTGAGAGTGATGATGCTTTGTCTTGTCTCTTCTCTTTGAGTTTGAG 651
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 597 TAACAAGAAAGGACCTGAGAGTGATGATGCTTTGTCTTGTCTCTTCTCGTTGAGTTTGAG 656
Query 652 ATCTCCATTGAACTCAAAGAAGAAAAGACACACGGTGGCTCTTGCTTTAGGGATAACCGG 711
||||||||||| |||||| ||||||||||||||||||||||| | |||||||||||||||
Sbjct 657 ATCTCCATTGAGCTCAAAAAAGAAAAGACACACGGTGGCTCTGGTTTTAGGGATAACCGG 716
Query 712 AGCTATTTTCGGGGCTCTGGTTATTGCCGGTTTGATTTGTTTGTATTTCCGGTTTGGTAA 771
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 717 AGCTATTTTCGCGGCTCTGGTTATTGCCGGTTTGATTTGTTTGTATTTCCGGTTTGGTAA 776
Query 772 AGCTGTTAAAGGAGGAGAGGTTGGTTGGGAGGATCAAGGGTCTAGACCGAAATGGAGACC 831
|||||||||||||||||| ||||||||||||||||||| |||||||||||||||| ||||
Sbjct 777 AGCTGTTAAAGGAGGAGAAGTTGGTTGGGAGGATCAAGAGTCTAGACCGAAATGGCGACC 836
Query 832 AAACACTGGCTCTATCTGGTTCAAAATCGAGGAACTAGAGAAAGCTACGAATAACTTCTC 891
|||||||||||| ||||||||||||||||||||||||||||| ||||||||||| |||||
Sbjct 837 AAACACTGGCTCAATCTGGTTCAAAATCGAGGAACTAGAGAAGGCTACGAATAATTTCTC 896
Query 892 GCAGAAGAATTTCATCGGTCGAGGCGGGTTTGGTTTTGTTTACAAAGGGGTTTTACCAGA 951
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 897 GCAGAAGAATTTCATCGGTCGAGGCGGGTTTGGTTTTGTTTACAAAGGGGTTTTACCAGA 956
Query 952 TGGATCGGTTATCGCGGTTAAGAAGGTGATAGAGTCTGAGTTTCAAGGGGATGCAGAGTT 1011
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 957 TGGATCGGTTATCGCGGTTAAGAAGGTGATAGAGTCTGAGTTTCAAGGGGATGCAGAGTT 1016
Query 1012 TCGTAATGAGGTTGAGATCATTAGCAATTTGAAACATAGGAATCTTGTTCCGCTTAGAGG 1071
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1017 TCGTAATGAGGTTGAGATCATTAGCAATTTGAAACATAGGAATCTTGTTCCGCTTAGAGG 1076
Query 1072 TTGTAGTATGGTGGATGATGATAGTGAGAGTCAGAGATATCTTGTTTATGATTACATGTC 1131
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1077 TTGTAGTATGGTGGATGATGATAGTGAGAGTCAGAGATATCTTGTTTATGATTACATGTC 1136
Query 1132 TAATGGAAATCTCGATGATCACTTGTTTCCTCGAGGTGAGACTACGAAGATGCCATTGAG 1191
|||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||
Sbjct 1137 TAATGGAAATCTCGATGATCACCTGTTTCCTCGGGGTGAGACTACGAAGATGCCATTGAG 1196
Query 1192 CTGGCCTCAGAGAAAGAGCATCATTTTGGATGTGGCTAAAGGGTTGGCTTATTTGCATTA 1251
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 1197 CTGGCCTCAGAGAAAGAGCATCATTTTGGATGTGGCCAAAGGGTTGGCTTATTTGCATTA 1256
Query 1252 CGGTGTGAAACCCGCTATTTATCACCGGGATATTAAAGGTACGAACATATTGTTAGATGT 1311
||||| |||||| || ||||| ||||||||||| ||||||||||||||||||||||||||
Sbjct 1257 CGGTGAGAAACCTGCGATTTACCACCGGGATATCAAAGGTACGAACATATTGTTAGATGT 1316
Query 1312 CGATATGAGAGCGAGAGTTGCGGATTTCGGTTTAGCTAAACAGAGTAGAGAAGGAGAGTC 1371
||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1317 CGATATGAGAGCGAGGGTTGCGGATTTTGGTTTAGCTAAACAGAGTAGAGAAGGAGAGTC 1376
Query 1372 TCATCTCACTACCAGAGTTGCGGGAACACACGGTTACTTGGCTCCAGAGTATGCCCTCTA 1431
|||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||
Sbjct 1377 TCATCTCACTACCAGAGTTGCGGGAACACACGGTTATTTGGCTCCAGAGTATGCGCTCTA 1436
Query 1432 TGGTCAATTAACCGAGAAAAGCGATGTGTATAGCTTCGGGGTTGTTATATTGGAGATCAT 1491
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||
Sbjct 1437 TGGTCAATTAACCGAGAAAAGCGATGTTTATAGCTTCGGGGTTGTTATATTGGAGATAAT 1496
Query 1492 GTGTGGAAGGAAAGCTCTTGATCTGTCTACTTCTGGATCACCAAACACTTTTCTGATCAC 1551
|||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||
Sbjct 1497 GTGTGGAAGGAAAGCTCTTGATCTTTCTACTTCCGGATCACCAAACACTTTTCTGATCAC 1556
Query 1552 AGATTGGGCTTGGTCATTGGTAAAAGCAGGGAAAACAGAGGAAGCTCTTGAGCAGTCTTT 1611
||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1557 AGATTGGGCTTGGTCGTTGGTAAAAGCAGGGAAAACAGAGGAAGCTCTTGACCAGTCTTT 1616
Query 1612 GTTGAGAGAGGAAGGCTCAGGGCTCTCGAATCCGAAAGGGATAATGGAGAGATTCTTGCA 1671
|||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||
Sbjct 1617 GTTGAGAGAGGAAGGCTCAGGGATGTCGAATCCGAAAGGGATAATGGAGAGATTCTTGCA 1676
Query 1672 AGTTGGGATATTGTGTGCCCATGTATTGGTTGCTTTAAGGCCAACAATATTAGATGCATT 1731
||||||||| |||||||| ||||||||||||||| |||||||||||||||||||||||||
Sbjct 1677 AGTTGGGATTTTGTGTGCTCATGTATTGGTTGCTCTAAGGCCAACAATATTAGATGCATT 1736
Query 1732 GAAAATGCTTGAAGGAGACATCGAGGTTCCTCCTATTCCGGACCGACCAGTCCCGCTCGC 1791
||||||||||||||||||||| ||||| |||||||||||||| |||||||||||||| ||
Sbjct 1737 GAAAATGCTTGAAGGAGACATTGAGGTCCCTCCTATTCCGGATCGACCAGTCCCGCTTGC 1796
Query 1792 GCATCCTTCGTACCGTATGGACGGAAACGGATTCACAATATCGCCTGCGCTTAGCGGACT 1851
||||||||| ||||| |||||||||||||||||||||||||||||| |||| ||||||||
Sbjct 1797 GCATCCTTCATACCGCATGGACGGAAACGGATTCACAATATCGCCTACGCTCAGCGGACT 1856
Query 1852 ACAAATACATTCCGGAGATATGCTCAGATGA 1882
||||||||||||||||||||||||| |||||
Sbjct 1857 ACAAATACATTCCGGAGATATGCTCCGATGA 1887
Score = 161 bits (87), Expect = 2e-38
Identities = 113/125 (90%), Gaps = 3/125 (2%)
Strand=Plus/Plus
Query 2132 CAGTGGTTCACAGTCCTGCACCATCTTGACACTAATGGTCCTCTCGCCTCAGCCACCATG 2191
|||||||||||||| ||||| ||||||||||| |||||| || |||||||||||||||
Sbjct 1888 CAGTGGTTCACAGTGAGGCACCGTCTTGACACTATTGGTCCCCTAGCCTCAGCCACCATG 1947
Query 2192 TAAAATTCTGCAACCATTCA-AATTTGTGTTTATTT-TTGTCCGTTGCAAAATTTATATG 2249
||||||||||||||||| || ||||||||||| ||| || ||||||||||||||||||||
Sbjct 1948 TAAAATTCTGCAACCAT-CATAATTTGTGTTTTTTTCTTCTCCGTTGCAAAATTTATATG 2006
Query 2250 TATAT 2254
|||||
Sbjct 2007 TATAT 2011
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 85931592720
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5