BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT1G11050.1 Length=2282 Score E Sequences producing significant alignments: (Bits) Value Ahg471239 jgi|Araly1|471239|fgenesh2_kg.1__1193__AT1G11050.1 2972 0.0 > Ahg471239 jgi|Araly1|471239|fgenesh2_kg.1__1193__AT1G11050.1 Length=2011 Score = 2972 bits (1609), Expect = 0.0 Identities = 1800/1891 (95%), Gaps = 17/1891 (1%) Strand=Plus/Plus Query 5 ATGCC-TAACTCGATTCTCTTTCTTCTTCTTTCA-------T-TCC-TGTATCTCACAAA 54 ||||| ||| ||||||||||||||||||||||| | ||| |||||||| ||| Sbjct 1 ATGCCGAAAC-CGATTCTCTTTCTTCTTCTTTCACTCCTCTTCTCCTTGTATCTCTCAAC 59 Query 55 CTGCGTTGCTCAATCTCCATCACAAACTTGTCCTTTAGATTTCTCTCATGTCCTAACAAT 114 ||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||| Sbjct 60 CTGCGTTGCTCAATCGCCATCACCAACTTGTCCTTTAGATTTCTCTCATGTCCTAACAAT 119 Query 115 CCCATGGAACACAACAGATTGTCAAAAG-TCCGACAAATCAGCCGATAGCAAGAACAGTT 173 |||||||||||||||||| |||| ||| | |||||||||||| || ||||||||||||| Sbjct 120 CCCATGGAACACAACAGACTGTC-GAAGCTACGACAAATCAGCAGACAGCAAGAACAGTT 178 Query 174 GTTGCCAATCTCTTTTAACTCTAATCGGAATCCCTCTAGCTCATCGTCTCAAACAAACTT 233 ||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||| Sbjct 179 GTTGCCAATCTGTCTTAACTCTAATCGGAATCCCTCTAGCTCATCGTCTCAAACAAACTT 238 Query 234 CCAATTTCCGTCTCCCAAATCTCGCTACTTCAATCTCTTGTCTCAACAATCTCCAAACGA 293 ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| Sbjct 239 CCAATTTCCGTCTCCCAAATCTCGCTACTTCAATCTCTTGTCTCAACAACCTCCAAACGA 298 Query 294 AGCTTAGTTCACTCTCTCTATCTTCGAATCTCACCTCTCTCTGTTTCGATCCGAATCAGT 353 |||||| ||||||||||||||||||||||||||| || |||||||||||||||||||| | Sbjct 299 AGCTTAATTCACTCTCTCTATCTTCGAATCTCACTTCCCTCTGTTTCGATCCGAATCAAT 358 Query 354 TCGTCATCAATAACGAAACCTGTGCTGGAATCCAAACGACTCAAGATTGGGTATCTCGTC 413 |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| Sbjct 359 TCGTCATCAATAACGAAACCTGTGCTGGAATCCAAACGACTCAAGATTGGGTCTCTCGTC 418 Query 414 TCGGTCCATCTACGGCGCTTGACTCCGCCTGTAGCAGTGGTCTCACTGATCTAACGCGAT 473 | ||||| || ||||||||||| || || ||||||||||||||||| ||||| ||||||| Sbjct 419 TTGGTCCCTCGACGGCGCTTGATTCTGCTTGTAGCAGTGGTCTCACCGATCTCACGCGAT 478 Query 474 GCGACGCTTGCGTGGCGGCTGGGTTTAGGGTTCAAAAACAGCTCATCACTTTGGACGGTA 533 |||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||| Sbjct 479 GCGACGCTTGCGTGGCGGCTGGGTTTAGGGTTCAGAAACAGCTGATCACTTTGGACGGTA 538 Query 534 ATAGCTCTCACGGTGTTTATTGTTACCATTTTG-TGGTTAC-TTACGCTGCTGGTATTGT 591 |||||||||||||| |||||||||||||||| | | ||| | |||||||||||||||||| Sbjct 539 ATAGCTCTCACGGTCTTTATTGTTACCATTTCGCT-GTT-CTTTACGCTGCTGGTATTGT 596 Query 592 TAACAAGAAAGGACCTGAGAGTGATGATGCTTTGTCTTGTCTCTTCTCTTTGAGTTTGAG 651 |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| Sbjct 597 TAACAAGAAAGGACCTGAGAGTGATGATGCTTTGTCTTGTCTCTTCTCGTTGAGTTTGAG 656 Query 652 ATCTCCATTGAACTCAAAGAAGAAAAGACACACGGTGGCTCTTGCTTTAGGGATAACCGG 711 ||||||||||| |||||| ||||||||||||||||||||||| | ||||||||||||||| Sbjct 657 ATCTCCATTGAGCTCAAAAAAGAAAAGACACACGGTGGCTCTGGTTTTAGGGATAACCGG 716 Query 712 AGCTATTTTCGGGGCTCTGGTTATTGCCGGTTTGATTTGTTTGTATTTCCGGTTTGGTAA 771 ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 717 AGCTATTTTCGCGGCTCTGGTTATTGCCGGTTTGATTTGTTTGTATTTCCGGTTTGGTAA 776 Query 772 AGCTGTTAAAGGAGGAGAGGTTGGTTGGGAGGATCAAGGGTCTAGACCGAAATGGAGACC 831 |||||||||||||||||| ||||||||||||||||||| |||||||||||||||| |||| Sbjct 777 AGCTGTTAAAGGAGGAGAAGTTGGTTGGGAGGATCAAGAGTCTAGACCGAAATGGCGACC 836 Query 832 AAACACTGGCTCTATCTGGTTCAAAATCGAGGAACTAGAGAAAGCTACGAATAACTTCTC 891 |||||||||||| ||||||||||||||||||||||||||||| ||||||||||| ||||| Sbjct 837 AAACACTGGCTCAATCTGGTTCAAAATCGAGGAACTAGAGAAGGCTACGAATAATTTCTC 896 Query 892 GCAGAAGAATTTCATCGGTCGAGGCGGGTTTGGTTTTGTTTACAAAGGGGTTTTACCAGA 951 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 897 GCAGAAGAATTTCATCGGTCGAGGCGGGTTTGGTTTTGTTTACAAAGGGGTTTTACCAGA 956 Query 952 TGGATCGGTTATCGCGGTTAAGAAGGTGATAGAGTCTGAGTTTCAAGGGGATGCAGAGTT 1011 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 957 TGGATCGGTTATCGCGGTTAAGAAGGTGATAGAGTCTGAGTTTCAAGGGGATGCAGAGTT 1016 Query 1012 TCGTAATGAGGTTGAGATCATTAGCAATTTGAAACATAGGAATCTTGTTCCGCTTAGAGG 1071 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1017 TCGTAATGAGGTTGAGATCATTAGCAATTTGAAACATAGGAATCTTGTTCCGCTTAGAGG 1076 Query 1072 TTGTAGTATGGTGGATGATGATAGTGAGAGTCAGAGATATCTTGTTTATGATTACATGTC 1131 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1077 TTGTAGTATGGTGGATGATGATAGTGAGAGTCAGAGATATCTTGTTTATGATTACATGTC 1136 Query 1132 TAATGGAAATCTCGATGATCACTTGTTTCCTCGAGGTGAGACTACGAAGATGCCATTGAG 1191 |||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||| Sbjct 1137 TAATGGAAATCTCGATGATCACCTGTTTCCTCGGGGTGAGACTACGAAGATGCCATTGAG 1196 Query 1192 CTGGCCTCAGAGAAAGAGCATCATTTTGGATGTGGCTAAAGGGTTGGCTTATTTGCATTA 1251 |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| Sbjct 1197 CTGGCCTCAGAGAAAGAGCATCATTTTGGATGTGGCCAAAGGGTTGGCTTATTTGCATTA 1256 Query 1252 CGGTGTGAAACCCGCTATTTATCACCGGGATATTAAAGGTACGAACATATTGTTAGATGT 1311 ||||| |||||| || ||||| ||||||||||| |||||||||||||||||||||||||| Sbjct 1257 CGGTGAGAAACCTGCGATTTACCACCGGGATATCAAAGGTACGAACATATTGTTAGATGT 1316 Query 1312 CGATATGAGAGCGAGAGTTGCGGATTTCGGTTTAGCTAAACAGAGTAGAGAAGGAGAGTC 1371 ||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||| Sbjct 1317 CGATATGAGAGCGAGGGTTGCGGATTTTGGTTTAGCTAAACAGAGTAGAGAAGGAGAGTC 1376 Query 1372 TCATCTCACTACCAGAGTTGCGGGAACACACGGTTACTTGGCTCCAGAGTATGCCCTCTA 1431 |||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||| Sbjct 1377 TCATCTCACTACCAGAGTTGCGGGAACACACGGTTATTTGGCTCCAGAGTATGCGCTCTA 1436 Query 1432 TGGTCAATTAACCGAGAAAAGCGATGTGTATAGCTTCGGGGTTGTTATATTGGAGATCAT 1491 ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| || Sbjct 1437 TGGTCAATTAACCGAGAAAAGCGATGTTTATAGCTTCGGGGTTGTTATATTGGAGATAAT 1496 Query 1492 GTGTGGAAGGAAAGCTCTTGATCTGTCTACTTCTGGATCACCAAACACTTTTCTGATCAC 1551 |||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||| Sbjct 1497 GTGTGGAAGGAAAGCTCTTGATCTTTCTACTTCCGGATCACCAAACACTTTTCTGATCAC 1556 Query 1552 AGATTGGGCTTGGTCATTGGTAAAAGCAGGGAAAACAGAGGAAGCTCTTGAGCAGTCTTT 1611 ||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||| Sbjct 1557 AGATTGGGCTTGGTCGTTGGTAAAAGCAGGGAAAACAGAGGAAGCTCTTGACCAGTCTTT 1616 Query 1612 GTTGAGAGAGGAAGGCTCAGGGCTCTCGAATCCGAAAGGGATAATGGAGAGATTCTTGCA 1671 |||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||| Sbjct 1617 GTTGAGAGAGGAAGGCTCAGGGATGTCGAATCCGAAAGGGATAATGGAGAGATTCTTGCA 1676 Query 1672 AGTTGGGATATTGTGTGCCCATGTATTGGTTGCTTTAAGGCCAACAATATTAGATGCATT 1731 ||||||||| |||||||| ||||||||||||||| ||||||||||||||||||||||||| Sbjct 1677 AGTTGGGATTTTGTGTGCTCATGTATTGGTTGCTCTAAGGCCAACAATATTAGATGCATT 1736 Query 1732 GAAAATGCTTGAAGGAGACATCGAGGTTCCTCCTATTCCGGACCGACCAGTCCCGCTCGC 1791 ||||||||||||||||||||| ||||| |||||||||||||| |||||||||||||| || Sbjct 1737 GAAAATGCTTGAAGGAGACATTGAGGTCCCTCCTATTCCGGATCGACCAGTCCCGCTTGC 1796 Query 1792 GCATCCTTCGTACCGTATGGACGGAAACGGATTCACAATATCGCCTGCGCTTAGCGGACT 1851 ||||||||| ||||| |||||||||||||||||||||||||||||| |||| |||||||| Sbjct 1797 GCATCCTTCATACCGCATGGACGGAAACGGATTCACAATATCGCCTACGCTCAGCGGACT 1856 Query 1852 ACAAATACATTCCGGAGATATGCTCAGATGA 1882 ||||||||||||||||||||||||| ||||| Sbjct 1857 ACAAATACATTCCGGAGATATGCTCCGATGA 1887 Score = 161 bits (87), Expect = 2e-38 Identities = 113/125 (90%), Gaps = 3/125 (2%) Strand=Plus/Plus Query 2132 CAGTGGTTCACAGTCCTGCACCATCTTGACACTAATGGTCCTCTCGCCTCAGCCACCATG 2191 |||||||||||||| ||||| ||||||||||| |||||| || ||||||||||||||| Sbjct 1888 CAGTGGTTCACAGTGAGGCACCGTCTTGACACTATTGGTCCCCTAGCCTCAGCCACCATG 1947 Query 2192 TAAAATTCTGCAACCATTCA-AATTTGTGTTTATTT-TTGTCCGTTGCAAAATTTATATG 2249 ||||||||||||||||| || ||||||||||| ||| || |||||||||||||||||||| Sbjct 1948 TAAAATTCTGCAACCAT-CATAATTTGTGTTTTTTTCTTCTCCGTTGCAAAATTTATATG 2006 Query 2250 TATAT 2254 ||||| Sbjct 2007 TATAT 2011 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 85931592720 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5