BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G11060.1
Length=3103
Score E
Sequences producing significant alignments: (Bits) Value
Ahg910852 jgi|Araly1|910852|Al_scaffold_0001_1106 4370 0.0
Ahg924940 jgi|Araly1|924940|scaffold_200501.1 826 0.0
> Ahg910852 jgi|Araly1|910852|Al_scaffold_0001_1106
Length=2622
Score = 4370 bits (2366), Expect = 0.0
Identities = 2539/2624 (97%), Gaps = 6/2624 (0%)
Strand=Plus/Plus
Query 172 ATGATGGAACGAACCTACGGCCGCCGTAAGCCGGGGATTCCGAGGACCCTATCGGACTCT 231
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1 ATGATGGAACGAACCTACGGCCGCCGTAAGCCGGGGATTCCGAGGACCCTATCCGACTCT 60
Query 232 CTAAACGACTCTGTTTCTCAGACTGAGTATCTCTCTTCCTCTTCGTCGCCGGACATCGAG 291
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 CTAAACGACTCCGTTTCTCAGACTGAGTATCTCTCTTCCTCTTCGTCGCCGGACATCGAG 120
Query 292 CCCATTGATTACTCTCTCCTTCCTTTCTCCAGTCAAGAGTCTTCCTCTCTCTGGCATTCT 351
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 121 CCCATTGATTACTCTCTCCTTCCTTTCTCCAGTCAAGAGTCTTCCTCTCTCTGGCATTCT 180
Query 352 TCTTCCAGGTCAAATTTCAGAGAGGATTATCCACAGAACGGAGGTGTTGTACGGAGGGCG 411
||||| |||||| ||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 181 TCTTCTAGGTCAGATTTCAGAGAGGATTATCCACAGAACGGAGGCGTTGTACGGAGGGCG 240
Query 412 AAAAGAGTCAGGAACGGTGCTGAGGCTGCTGCTTTTACTTCCACTTTGCTTGAGGCTCAG 471
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 241 AAAAGAGTCAGGAACGGTGCTGAGGCTGCTGCTTTTACTTCCACTTTGCTTGAGGCTCAG 300
Query 472 GAGTTTGGTGAGCTGATGGAGCATGAGGATGAGGTTAACTTTGCGCTTGATGGGTTGAGG 531
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 301 GAGTTTGGTGAGCTGATGGAGCATGAGGATGAGGTTAACTTTGCGCTTGATGGCTTGAGG 360
Query 532 AAAGGACACCAGCTCAGGATCAGAAGAGCTAGCTTGTCCTCTCTATTGTCGATTTGTGCA 591
|||||||| ||||| |||||||||||||| |||||||||||||||||||||||||| |||
Sbjct 361 AAAGGACAACAGCTGAGGATCAGAAGAGCAAGCTTGTCCTCTCTATTGTCGATTTGCGCA 420
Query 592 TCTCAACACCAGCGTCGCTCCTTGAGGGCTCAAGGGATTTCCCAATCCATAATTGATGCG 651
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 421 TCTCAACACCAGCGTCGCTCCTTGAGGGCTCAAGGGATTTCCCAATCCATAATTGATGCG 480
Query 652 ATTTTGGTTCTTAGCCTTGATGATATACCAAGCAATCTTGCCGCAGCCACCCTTTTCTTT 711
||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 481 ATTTTGGCTCTTAGCCTTGATGACATACCAAGCAATCTTGCCGCAGCCACCCTTTTCTTT 540
Query 712 GCGCTAACTGCTGATGGTCAAGACGAGCACTTTATGGAGTCACCCAAGTGCATCAAGTTT 771
| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 541 GTGTTAACTGCTGATGGTCAAGACGAGCACTTTATGGAGTCACCCAAGTGCATCAAGTTT 600
Query 772 CTGATAAAGTTGTTGAAACCTGTGATTGTCACTAGCACCGAAGGGAAGCCACGCAATATA 831
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 601 CTGATAAAGCTGTTGAAACCTGTGATTGTCACTAGCACCGAAGGGAAGCCACGCAATATA 660
Query 832 GGATTTAAGCTCTTATCATTACTTAAGGATGTTGATGCAGCACGGGATCCAGTGAAAATG 891
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 661 GGATTTAAGCTCTTATCATTACTTAAGGATGTTGATGCAGCACGGGATCCAGTGAAAATG 720
Query 892 GATGATCCGAGCTCCAGTGATATCCTCTCAAGAGTTCAGGAACTTCTTGTTAATTGCAAA 951
||||||| |||||||||||||| || |||||||||||||||||||||||||||||||||
Sbjct 721 AATGATCCAAGCTCCAGTGATATACTTTCAAGAGTTCAGGAACTTCTTGTTAATTGCAAA 780
Query 952 GAAATGAGACTGAATGATAGCTATATAACTGAAACAACGAGGCCTGAGCTAAGTACAAAA 1011
||||||| | ||||||||||||||| |||||||||||||||||||||||||||||| |||
Sbjct 781 GAAATGAAATTGAATGATAGCTATAAAACTGAAACAACGAGGCCTGAGCTAAGTACGAAA 840
Query 1012 TGGGTAGCTTTGTTGGCCATGGAGAGAGCATGCGTATCCAAAATTTCTTTTGATGATACT 1071
|||||||||||||||||||||||||| || ||| ||||||||||||||||||||||||||
Sbjct 841 TGGGTAGCTTTGTTGGCCATGGAGAGGGCGTGCTTATCCAAAATTTCTTTTGATGATACT 900
Query 1072 TCTGGTTCTGTAAAGAAGACTGGAGGGAATTTCAAGGAGAAACTGCGAGAACTAGGAGGA 1131
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 901 TCTGGTTCTGTGAAGAAGACTGGAGGGAATTTCAAGGAGAAACTGCGAGAACTAGGAGGA 960
Query 1132 CTTGATGCAGTCCTTGAGGTTGTTATGGATTGTCACGCTGTTATGGAGCGTTGGGTGGAA 1191
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 961 CTTGATGCAGTCCTTGAGGTTGTTATGGATTGTCACGCTGTTATGGAGCGTTGGGTGGAA 1020
Query 1192 TACGACGCACTTTCCGTCCAGGAAAAGAAAGATAATCTGCATAAACAGAGTTTAATGTTG 1251
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1021 TACGATGCACTTTCCGTCCAGGAAAAGAAAGATAATCTGCATAAACAGAGTTTAATGTTG 1080
Query 1252 CTTCTGAAGTGTCTGAAAATCATGGAGAATGCTACATTCCTCAGCACAGACAACCAGAAT 1311
|||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||
Sbjct 1081 CTTCTGAAGTGTCTGAAACTCATGGAGAATGCTACATTCCTCAGCACAGAAAACCAGAAT 1140
Query 1312 CATTTGCTCGGATTTAAGAAATGTTTGGGTTCTCATGATTCCCGAATGTCTTTCACAGAG 1371
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1141 CATTTGCTCGGATTTAAGAAATGTTTGGGTTCTCATGATTCCCGAATGTCTTTCACAGAG 1200
Query 1372 CTCACAATAAGTGTCATCAAGATGCTTTCAGGTCTTCACCTACGTGGAGGTTTTTCAAGT 1431
||||| |||||||||||||||||||||||||||||| ||||||||||||||||| |||||
Sbjct 1201 CTCACGATAAGTGTCATCAAGATGCTTTCAGGTCTTTACCTACGTGGAGGTTTTCCAAGT 1260
Query 1432 CCTAACACGAACAATGTGAATTCTCACTATTCAAATGGTGGTAATCATGATTCTGTTTTG 1491
|||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||
Sbjct 1261 CCTAACACGAACAATGTGAATTCTCACTATTCAAATGGTGGTAATCGTGATTCTATTTTG 1320
Query 1492 GAAGCAAATAGGAAAGTTACCAATGAGGTTGTGACAATCAGTTCAGATACATACTCGACC 1551
|||||| || |||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 1321 GAAGCAGATCGGAAAGTTACCAATGAGGTTGTGACAATCAGTTCAGATACATGCTCGACC 1380
Query 1552 GTTGGCTCTATCTCCACGAGGAATGGGAGTGTATCCCAAAGAAGTCAATCCATAATCCAT 1611
||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 1381 TTTGGCTCTATCTCCACGAGGAATGGGAGTGTATCCCAAAGAAGTCAATCAATAATCCAT 1440
Query 1612 TTAGATTTCTCGCCAACATCAATGTCGGGTTCTCAATCAAGTGTGTCGGGGAATGAGCCT 1671
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1441 TTAGATTTCTCGCCAACATCAATGTCGGGTTCTCAATCAAGTGTGTCGGGGAATGAGCCT 1500
Query 1672 ACTACGTCAAAAACAAGAGTCGGTTCCACCATCTCTGGCTCATTTGCAGGGAGATTAGCG 1731
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 1501 ACTACGTCAAAAACAAGAGTCGGTTCCACCATCTCTGGTTCATTTGCAGGGAGATTAGCG 1560
Query 1732 TCATTGGGTAGTGACATTGCCAGAACTACTTTAAGGACTACTCAAGCTGGAGAACCAATC 1791
|||||||||| || ||||||||||| ||||| |||||||| |||||||||||||||||||
Sbjct 1561 TCATTGGGTAATGGCATTGCCAGAAGTACTTCAAGGACTAGTCAAGCTGGAGAACCAATC 1620
Query 1792 TGTAAAA-AATTTGGAGAGTTTGCACCCCCCGAGGAAAGCGAAGATCCTTTTGCGTTTGA 1850
||||||| || |||||||||||||| ||||||| ||||||||||||||||||||||||||
Sbjct 1621 TGTAAAAGAA-TTGGAGAGTTTGCATCCCCCGATGAAAGCGAAGATCCTTTTGCGTTTGA 1679
Query 1851 TTTAGAAGATTATAAACCTTCCAAGTGGGCAGTAGTGTCCGTAAACCAAAAGAAGTCTAG 1910
||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1680 TTTGGAAGATGCTAAACCTTCCAAGTGGGCAGTAGTGTCCGTAAACCAAAAGAAGTCTAG 1739
Query 1911 AGCTCAAAAGAAGAAAGGATGCTACAAACAAAGTAAAGATGAAAGTTTGTATCAGCTGTT 1970
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1740 AGCTCAAAAGAAGAAAGGATGCTACAAACAAAGTAAAGATGAAAGTTTGTATCAGCTGTT 1799
Query 1971 CTCAAGCCAAGAAGAGTCATCAAACCATAGGTTGAATTCCCAAGAAGAATCAAGTAACAG 2030
||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||
Sbjct 1800 CTCAAGCCAAGAAGAATCGTCAAACCATAGGTTGAATTCCCAAGAAGAATCAAGTAACAG 1859
Query 2031 AGACTGCAGTACATCGCTGCAACCATC-TCATTGTACAAATGACATTGATGAAGAATGTC 2089
||||||||||||||||||||||||||| || ||||||||||||||| |||||||||||||
Sbjct 1860 AGACTGCAGTACATCGCTGCAACCATCTTC-TTGTACAAATGACATAGATGAAGAATGTC 1918
Query 2090 TCTGTCTTTTATTTGATTGCCTTCTGACAGCCGTAAAGGTTTTGATGAACTTAACAAATG 2149
|||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 1919 TCTGTCTTTTATCTGATTGCCTTCTAACAGCCGTAAAGGTTTTGATGAACTTAACAAATG 1978
Query 2150 ATAACGTTGTCGGATGTCGACAAGTTGGTGGGTGTAGAGGGCTGGAAAGCATGGCTGAAT 2209
| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1979 ACAACGCTGTCGGATGTCGACAAGTTGGTGGGTGTAGAGGGCTGGAAAGCATGGCTGAGT 2038
Query 2210 TAATTGCCAGACACTTTCCGTCTTTCACCAGATCTCAGCTTTTCAGTGAGATGGAAAAGA 2269
||||||||||||||||||| |||||||||| ||||| |||||||||||||||||||||||
Sbjct 2039 TAATTGCCAGACACTTTCCATCTTTCACCAAATCTCCGCTTTTCAGTGAGATGGAAAAGA 2098
Query 2270 CGGGATCGTCCCATCAGAAGAAAGACAAATACCTTACCGATCAGGAGTTAGATTTTCTTG 2329
| ||||||||||||||||||||||||||| | ||||| ||||||||||||||||||||||
Sbjct 2099 CAGGATCGTCCCATCAGAAGAAAGACAAACATCTTACAGATCAGGAGTTAGATTTTCTTG 2158
Query 2330 TTGCCATCTTGGGTTTGCTGGTAAATTTGGTTGA-AAGAGACGGAGTGAACAGATCACGG 2388
||||||||||||| |||||||||||||||||||| || ||||||||||||||||||||||
Sbjct 2159 TTGCCATCTTGGGCTTGCTGGTAAATTTGGTTGAGAA-AGACGGAGTGAACAGATCACGG 2217
Query 2389 CTTGCTTCAGCGAGTGTTCCTATTACAAAACCAGAAGAGTTGCAAGAAAGTGAACAGGAA 2448
||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||
Sbjct 2218 CTTGCTTCAGCGAGTGTTCCTATTACAAAACCAGAAGGGTTGCAAGAGAGTGAACAGGAA 2277
Query 2449 ATGATTCCTTTACTATGTTCAATCTTTCTCACCAATCAAGGATCAGCAGAGACCAAAGAA 2508
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2278 ATGATTCCTTTACTATGTTCAATCTTTCTCACCAATCAAGGATCAGCAGAGACCAAAGAA 2337
Query 2509 GAGACAACTACCTTCACCTTAGATGATGAAGAAGCTGTTTTAGAAGGCGAAAAGGAAGCG 2568
||||||||||| ||||||||||||||||| ||||||||||||||||||||||| || |||
Sbjct 2338 GAGACAACTACTTTCACCTTAGATGATGAGGAAGCTGTTTTAGAAGGCGAAAAAGAGGCG 2397
Query 2569 GAAAAGATGATTGTAGAAGCATACTCTGCTCTACTACTCGCCTTTCTTTCAACTGAAAGT 2628
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2398 GAAAAGATGATTGTGGAAGCATACTCTGCTCTACTACTCGCCTTTCTTTCAACTGAAAGT 2457
Query 2629 AGAAGTATACGCAACTCCATCAAGGACTATCTCCCGAAACGCAATCTGGCAATTCTTGTA 2688
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2458 ATAAGTATACGCAACTCCATCAAGGACTATCTCCCGAAACGCAATCTGGCAATTCTTGTA 2517
Query 2689 CCGGTTTTGGAAAGATTTGTGGCATTTCACATGACTCTGAACATGATCCCTCCGGAGACA 2748
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2518 CCGGTTTTGGAAAGATTTGTGGCATTTCACATGACTCTGAACATGATCCCTCCGGAGACA 2577
Query 2749 CATAAAGCAGTGATGGGAGTGATTGAATCCTGCAAATCACCGTA 2792
|||||||||||||||| ||||||| |||| ||||||| ||||||
Sbjct 2578 CATAAAGCAGTGATGGAAGTGATTAAATCATGCAAATTACCGTA 2621
> Ahg924940 jgi|Araly1|924940|scaffold_200501.1
Length=2576
Score = 826 bits (447), Expect = 0.0
Identities = 834/1018 (82%), Gaps = 37/1018 (4%)
Strand=Plus/Plus
Query 420 CAGGAACGGTGCT-GAGGCTGCTGCTTTTACTTCCACTTTGCTTGAGGCTCAGGAGTTTG 478
||| ||||||| | |||| | || ||| | ||| |||||| | ||| | || || || |
Sbjct 227 CAGAAACGGTGGTGGAGGGT-TTGGTTTGAATTCGACTTTGATGGAGACGCAAGAATTCG 285
Query 479 GTGAGCTGATGGAGCATGAGGATGAGGTTAACTTTGCGCTTGATGGGTTGAGGAAAGGAC 538
| ||| | |||||| ||||||| ||||||||||| || ||||||||||| | |||||| |
Sbjct 286 GCGAGTTAATGGAGAATGAGGACGAGGTTAACTTCGCTCTTGATGGGTTAAAGAAAGGTC 345
Query 539 A-CCAGCTCAGGATCAGAAGAGCTAGCT-TGTCCTCTCTATTGTCGATTTGTGCATCTCA 596
| | || | ||||||||||||||| ||| |||| |||||| | |||||||| | ||||||
Sbjct 346 ATCAAG-TTAGGATCAGAAGAGCT-GCTCTGTCTTCTCTACTCTCGATTTGCGAATCTCA 403
Query 597 ACACCAGCGTCGCTCCTTGAGGGCTCAAGGGATTTCCCAATCCATAATTGATGCGATTTT 656
| | ||||| ||||| ||||| ||| |||||| || ||||||||||| ||||| |||||
Sbjct 404 ATATCAGCGACGCTCTTTGAGAGCTTTAGGGATCTCACAATCCATAATCGATGCAATTTT 463
Query 657 GGTTCTTAGCCTTGATGATATACCAAGCAATCTTGCCGCAGCCACCCTTTTCTTTGCGCT 716
|| |||||| |||||||| ||||||||||||||||| ||||| ||||||||||||| |||
Sbjct 464 GGGTCTTAGTCTTGATGACATACCAAGCAATCTTGCTGCAGCTACCCTTTTCTTTGTGCT 523
Query 717 AACTGCTGATGGTCAAGACGAGCACTTTATGGAGTCACCCAAGTGC-ATCAAGTTTCTGA 775
|||| ||||||||||||| || |||||||||||||||||||| | | ||||||||| |||
Sbjct 524 AACTACTGATGGTCAAGATGATCACTTTATGGAGTCACCCAACT-CTATCAAGTTTTTGA 582
Query 776 TAAAGTTGTTGAAACCTGTGATTGT-CACTAGCACCGAAGGGAAGCCAC-GC--AATATA 831
| ||| |||||| ||||||| || | | | || || |||||||||| | || ||||||
Sbjct 583 TCAAGCTGTTGAGACCTGTGGTT-TCCGCCAGTACTAAAGGGAAGCCGCGGCGGAATATA 641
Query 832 GGATTTAAGCTCTTATCAT-TACTTAAGGATGTTGATGCAGCACGGGATCCAGTG-AAAA 889
|||| || ||||||||| | || | |||||||||||||||||||| ||| ||| | | |
Sbjct 642 GGATCTAGGCTCTTATC-TGTAATCAAGGATGTTGATGCAGCACGTGATTCAG-GCAGTA 699
Query 890 TGGATGATCCGAGCTCCAGTGATATCCTCTCA-AGAGTTCAGGA-ACTTCTTGTTAATTG 947
|| ||||| | |||||| ||||||| || | |||| ||||| | |||||||||||||
Sbjct 700 TGCATGATTCAAGCTCCTGTGATATACT-GGACAGAGCCCAGGAGA-TTCTTGTTAATTG 757
Query 948 CAAAGAAATGAGACTGAATGATAGCTATATAACTGAAACAACGAGGCCTGAGCTAAGTAC 1007
||| || ||||| || |||| |||||| || ||| | | ||||||||||||||||||
Sbjct 758 CAAGGAGTTGAGATTGGTTGATGGCTATAAAATTGAGAGGATGAGGCCTGAGCTAAGTAC 817
Query 1008 AAAATGGGTAGCTTTGTTGGCCATGGAG-AGAGCATGCGTATCCAAAATTTCTTTTGATG 1066
|||| ||||||||||||| |||||| || || ||| | |||||||| ||||||||||
Sbjct 818 GAAATTTGTAGCTTTGTTGGTGATGGAGAAG-GCGTGCTTGTCCAAAATCTCTTTTGATG 876
Query 1067 ATACTTCTGGTTCTGT-AAAGAAGA-CTGGAGGGAAT-TTCAAGGAGAAACTGCGAGAAC 1123
|||| |||||| |||| ||| || | |||| ||||| ||||||||||||||||||||||
Sbjct 877 ATACCTCTGGTACTGTGAAA-AA-ATTTGGA-GGAATGTTCAAGGAGAAACTGCGAGAAC 933
Query 1124 TAGGAGGACTTGATGCAGTCCTTGAGGTTGTTATGGATTGTCACGCTGTTATGGAGCGTT 1183
| |||||||||||||||||| |||| |||||||||||||||||| |||| |||||| | |
Sbjct 934 TTGGAGGACTTGATGCAGTCTTTGATGTTGTTATGGATTGTCACTCTGTAATGGAGAGCT 993
Query 1184 GGGTGG-AATACGACGCACTTTCCGTCC-AGGA-AAAGAAAGATAATCTGCATAAACAGA 1240
|||||| | | ||| || | || | || |||| | | |||||| || || |||| ||||
Sbjct 994 GGGTGGCACT-TGACACAATCTCTG-CCGAGGATATA-AAAGATGATTTGAATAAGCAGA 1050
Query 1241 GTTTAATGTTGCTTCTGAAGTGTCTGAAAATCATGGAGAATGCTACATTCCTCAGCACAG 1300
| | || ||||||||||| ||||| ||||||||||||||||||||||||||||||||||
Sbjct 1051 ATCTGATTTTGCTTCTGAAATGTCTAAAAATCATGGAGAATGCTACATTCCTCAGCACAG 1110
Query 1301 ACAACCAGAATCATTTGCTCGGATTTAAGAAATGTTTGGGTTCTCATG-ATTCCCGAATG 1359
| ||||||| |||||||||| ||||||| ||| | |||||||||||| || ||||| |
Sbjct 1111 AAAACCAGATTCATTTGCTCAGATTTAATAAAAGCATGGGTTCTCATGGAT-CCCGACTA 1169
Query 1360 TCTTTCACAGAGCTCACAATAAGTGTCATCAAGATGCTTTCAGGTCTTCACCTACGTG 1417
|||||| ||||||||| ||||| |||||||| || |||||||||||||| ||||||
Sbjct 1170 TCTTTCCCAGAGCTCATGATAAGCGTCATCAAAATACTTTCAGGTCTTCAGTTACGTG 1227
Score = 822 bits (445), Expect = 0.0
Identities = 896/1109 (81%), Gaps = 50/1109 (5%)
Strand=Plus/Plus
Query 1706 CTGGCTCATTTGCAGGGAGATTAGCGTCATTGGGTAGTGACATTGCCAGAACTACTTTAA 1765
|||| || || ||||| || ||||| ||||||||||||| |||| |||||| || | ||
Sbjct 1477 CTGGGTCGTTCGCAGGCAGGTTAGCCTCATTGGGTAGTGGCATTTCCAGAAGTAATGCAA 1536
Query 1766 GGACTA-CTCAAGCTGGAGAA-CCAATCTGTAAAAAATTTGGAGAGTTTGCACCCCCCGA 1823
|||||| | ||| || ||||| ||| | ||||||||| ||| | | ||| || || |||
Sbjct 1537 GGACTAGC-CAAACTAGAGAATCCAGT-TGTAAAAAAGTTGAAAACTTTTCATCCTTCGA 1594
Query 1824 GGAAAG-CGAAGATCCTTTTGCGTTTGATTTAGAAGATTATA-AACCTTCCAAGTGGGCA 1881
||| || | ||||||||||| | |||||||| ||||||| | ||||||||| ||||||
Sbjct 1595 GGATAGTC-AAGATCCTTTTTCATTTGATTTGGAAGATT-CAGGACCTTCCAAATGGGCA 1652
Query 1882 GTAGTGTCCGTAAACCAAAAGAAGTCTAGAGCTCAAAAGAAGAAAGGATGCTACA-A-AC 1939
||||| | | ||| |||||||| |||| || |||||||| ||| ||| |||||| | |
Sbjct 1653 GTAGTATTAGGAAAGCAAAAGAAATCTAAAGGTCAAAAGAGGAAGGGAAGCTACAGAGAT 1712
Query 1940 AAAGTAAAGATGAAAGTTTG-TATCAGCTGTTCTCAAGCCAAGAAGAGTCATCAAACCAT 1998
||| ||||||||| | | | | |||||| ||||| |||| || ||| ||||||||||
Sbjct 1713 AAA--AAAGATGAACGCTCGCT-TCAGCTCTTCTCGAGCC-AG--GAGGAATCAAACCAT 1766
Query 1999 AGGTTGAATTCCCAAGAAGAATCAAGTAACAGAGACT-G-CA-GT-ACATCGCTGCAACC 2054
|||| |||||||| |||||||||||| | ||||| | | || || ||| | ||||||
Sbjct 1767 GGGTTAAATTCCCAGGAAGAATCAAGTGATAGAGA-TCGCCATGTAACA--G-AGCAACC 1822
Query 2055 ATCTCATTGTACAAATGACATTGATGAAGAATGTCTCTGTCTTTTATTTGATTGCCTTCT 2114
| || || ||| ||||||||||| ||| ||||||||||||||||| |||||| ||| |
Sbjct 1823 -T-TC-TTCAACATATGACATTGATAAAGGATGTCTCTGTCTTTTATCTGATTGTCTTTT 1879
Query 2115 GACAGCCGTAAAGGTTTTGATGAACTTAACAAATGATAACGT-TGTCGGATGTCGACAAG 2173
|||||||| ||||| || |||||||||||||||||||| | ||| || ||||| |||
Sbjct 1880 AACAGCCGTGAAGGTATTAATGAACTTAACAAATGATAA-TTCTGTTGGTTGTCGGGAAG 1938
Query 2174 TTGGTGGGTGTAGAGGGCTGGAAAGCATGGCTGAATTAATTGCCAGACACTTTCCGTCTT 2233
||| || || ||||| ||||| ||||||||||||||||||| |||||||||| || |
Sbjct 1939 TTGCTGCCTGCAGAGGACTGGAGAGCATGGCTGAATTAATTGTTGGACACTTTCCTTCCT 1998
Query 2234 TCACCAGATCTCAGCTTTTCAGTGAGATGGAAAAG-ACGGGATCGTCCCATCAGAAGAAA 2292
|||||||||||| |||||||||| ||||| || ||||| | | ||| | |||||
Sbjct 1999 TCACCAGATCTCCGCTTTTCAGTCTGATGG---AGTCCGGGA-CATGCCA-C--CAGAAA 2051
Query 2293 GACAAATACCTTACCGATCAGGAGTTAGATTTTCTTGTTGCCATCTTGGGTTTGCTGGTA 2352
|| ||| | || || || ||||| |||||||||||||||||||||||||| || ||||||
Sbjct 2052 GATAAACATCTCACAGACCAGGAATTAGATTTTCTTGTTGCCATCTTGGGGTTACTGGTA 2111
Query 2353 AATTTGGTTGA-AAGAGACGGAGTGAACAGATCACGGCTTGCTTCAGCGAGTGTTCCTAT 2411
|| ||||| || || | ||||| | ||||| ||| |||| || |||| |||||||| ||
Sbjct 2112 AACTTGGTGGAGAA-AAACGGAATAAACAGGTCAAGGCTCGCGGCAGCTAGTGTTCCGAT 2170
Query 2412 TACAAAACCAGAAGAGTTGCAAGAAAGTGAACAGGAAATGATTCCT-TTACTATGTTCAA 2470
|| || ||||||||||||||||| |||||||| || ||||||||| || |||||||||
Sbjct 2171 CACTAATCCAGAAGAGTTGCAAGATAGTGAACAAGACATGATTCCTCTT-TTATGTTCAA 2229
Query 2471 TCTTTCTCACCAATCAAGGATCAGCAGA-GACCAAAGAAGAGACAACTACCTTCACCTTA 2529
|||||||||||||||||||||| ||||| | ||||||| || |||| ||| ||||| ||
Sbjct 2230 TCTTTCTCACCAATCAAGGATCCGCAGACG-CCAAAGATGATACAAGTACTTTCACTTTG 2288
Query 2530 GATGATGAAGAAGCTGTTTTAGAAGGCGAAAAGGAAGCGGAAAAGATGATTGTAGAAGCA 2589
|| ||||||||||||||||||||| |||||||||||||||||||||||||||| || |||
Sbjct 2289 GACGATGAAGAAGCTGTTTTAGAAAGCGAAAAGGAAGCGGAAAAGATGATTGTGGAGGCA 2348
Query 2590 TACTCTGCTCTACTACTCGCCTTTCTTTCAACTGAAAGTAGAAGTATACGCAACT-CCAT 2648
|| ||||| || || ||||| ||||| || || ||||||||||||||||| || | ||||
Sbjct 2349 TATTCTGCCCTCCTGCTCGCATTTCTATCCACAGAAAGTAGAAGTATACGAAA-TGCCAT 2407
Query 2649 CA-AGGACTATCTCCCGAAACGCAATC-TGGCAATTCTTGTACCGGTTTTGGAAAGATTT 2706
|| || | ||||| || |||||||| | |||||||||| |||||||| ||||| ||||||
Sbjct 2408 CAGAG-ATTATCTACCAAAACGCAA-CATGGCAATTCTGGTACCGGTGTTGGATAGATTT 2465
Query 2707 GTGGCATTTCACATGACTCTGAACATGATCCCTCCGGAGACACATAAAGCAGTGATGGGA 2766
|||| ||||| | || ||| ||||||| |||||||| || ||||||||||| |||| |
Sbjct 2466 TTGGCGTTTCATACAACACTGGACATGATTCCTCCGGAAACTCATAAAGCAGTTATGGAA 2525
Query 2767 GTGATTGAATCCTGCAAATCACCGTAGAA 2795
|| ||||| | ||||||| || |||||
Sbjct 2526 GTTATTGAGTTGTGCAAATTGCCATAGAA 2554
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 117203683865
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5