BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G11070.1
Length=2486
Score E
Sequences producing significant alignments: (Bits) Value
Ahg471241 jgi|Araly1|471241|fgenesh2_kg.1__1195__AT1G11070.1 2451 0.0
Ahg475218 jgi|Araly1|475218|fgenesh2_kg.2__348__AT1G61080.1 233 4e-60
> Ahg471241 jgi|Araly1|471241|fgenesh2_kg.1__1195__AT1G11070.1
Length=2028
Score = 2451 bits (1327), Expect = 0.0
Identities = 1766/1966 (90%), Gaps = 78/1966 (4%)
Strand=Plus/Plus
Query 568 AAGGTGTTAGCTGCATTAGATGGACTGATTAAGGGGATGAACGAGAGGCTTAATACGACA 627
|||||||||||||| ||||||||| ||||||||| ||||||||||||||| |||||||||
Sbjct 94 AAGGTGTTAGCTGCTTTAGATGGAATGATTAAGGTGATGAACGAGAGGCTCAATACGACA 153
Query 628 GAGAACGGCAATGTGGAAATGAAGAAAAAGGTTAGTCCGCGGAGTACTAAAACATCAAAT 687
|||| | ||||||| ||||||||||||||||||||||||||||||||||||||||| | |
Sbjct 154 GAGATCAGCAATGTTGAAATGAAGAAAAAGGTTAGTCCGCGGAGTACTAAAACATCTAGT 213
Query 688 GACCGATCAGAATCATTGGCGAAGCAACCGATCAGGCCAA-AAACGGTGCTGAGTCCACC 746
| |||||||||||||||||||||||||||||||| |||| ||| |||||||||||||||
Sbjct 214 GGCCGATCAGAATCATTGGCGAAGCAACCGATCACACCAAGAAA-GGTGCTGAGTCCACC 272
Query 747 GAGTAAAGTCCATGGAGACTTTTCAATCTCTGTGTCAAATCTTCCTAGAAATGTGAGAAT 806
||||||||| |||||||||| ||||||||||||||||||||||||| |||||||||||
Sbjct 273 GAGTAAAGT---TGGAGACTTTGCAATCTCTGTGTCAAATCTTCCTAGGAATGTGAGAAT 329
Query 807 GCAAGCGCTTGTAAAGCTGAGTCCTATCGATGTAAAGCGACTCGCTATCCAAAATTTTAG 866
||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 330 GCAAGCGCTCGTAAAGCTGAGTCCTATCGATGTAAAGCGGCTCGCTATCCAAAATTTTAG 389
Query 867 TCAGAAAGAAGCTCTGAGCAATAATGGTGATGGTGATGATGAGAGTCTCAAAGTGAAGAA 926
|||||||||||||| ||||||||| ||||||||| ||||||||||| | ||||||||| |
Sbjct 390 TCAGAAAGAAGCTCAGAGCAATAACGGTGATGGTAATGATGAGAGTGTTAAAGTGAAGCA 449
Query 927 GAGTGAAAC--AGA-G---GAGAA-A--G-C--A--AA-AGAAGCTATTCTTGAGAAACA 971
||||||||| ||| | ||||| | | | | || |||||||||||||||| ||||
Sbjct 450 GAGTGAAACAGAGAGGATTGAGAAGATGGACAAAGCAAGAGAAGCTATTCTTGAGGAACA 509
Query 972 AGATAGTGTGAAGAGTCAGATTGATGATAAAGATTGCTCAAAAGTTTCAGTGAAATCTGA 1031
|||||||||||||| ||||||||||||||| ||| |||||||||||||||||||||||
Sbjct 510 AGATAGTGTGAAGAACCAGATTGATGATAAAAATTTCTCAAAAGTTTCAGTGAAATCTG- 568
Query 1032 AATGGTTT-CAAAATCTTTTGCTCCGCCTCCTCCACCACCTCCAGGGAATGCAGCAATCC 1090
||| ||| ||||||||||| ||||||||||| |||||||||||||||||||||||||
Sbjct 569 AATATTTTCCAAAATCTTTTACTCCGCCTCCT---CCACCTCCAGGGAATGCAGCAATCC 625
Query 1091 -CGGTGGAACCACCACTTACAATGTCTG-CTGAAAAAGAGTCGTATGCTCCGCTTCCTCC 1148
| || ||||||||||||||||||||| | ||||| || | | |||||| ||||||||
Sbjct 626 TC-CTGCAACCACCACTTACAATGTCTGCCGGAAAAGGACT-GGCTGCTCCACTTCCTCC 683
Query 1149 ACCTCCCGGAAGAGCAGCACTACCACCGCCACCGCCACTTCCAATGGCTGTGAGAAAAGG 1208
||||||| |||| ||||||||||||||||||||||||||||||||||| | || | |
Sbjct 684 ACCTCCCAGAAGTGCAGCACTACCACCGCCACCGCCACTTCCAATGGC--T-AG-ACTGC 739
Query 1209 AGTGGCT-GCTCCGCCTCTTCCACCTCC-A-GG--GACTG-CAGCACTACCT-CCACCAC 1261
|| || |||| || | | || ||| | || | | | | || || || |||||||
Sbjct 740 AG-CACTACCTCCACCACCGCAACTTCCAATGGTTGCCGGAAAACAGTA-CTACCACCAC 797
Query 1262 CGCCACTTCCAATGGCTGCCGGAAAAGGAGTGGCTGCTCC-AC-C-ACCTCCTCCA---C 1315
| ||||||||||||||||| |||||||||||||||||||| | | || ||||||
Sbjct 798 CACCACTTCCAATGGCTGCGGGAAAAGGAGTGGCTGCTCCGCCGCTTCCACCTCCAGGGG 857
Query 1316 CTG--G-----C-GCAA-----GA-GGAGGCTTGGGAGCGAAGAAAGTAACTAGTAAACT 1361
||| | | |||| | |||||||||||||| ||||||| ||||||||||||
Sbjct 858 CTGCAGCACTACTGCAACCTCCAATGGAGGCTTGGGAGCCAAGAAAGCAACTAGTAAACT 917
Query 1362 GAAGAGATCAACCCATTTAGGGGCCCTATTTAGATTCCTCAAGGGGAAACTAGAAGGGAA 1421
||||||||||||||||||||||||||| |||||||||||||||| ||| ||||||||||
Sbjct 918 GAAGAGATCAACCCATTTAGGGGCCCTCTTTAGATTCCTCAAGGCAAAATTAGAAGGGAA 977
Query 1422 GAATCCAGAAGTAAGATCTCGTGGCGCTGGAGGAGGAAGTAAAGGCGCGACT-GGAAGCG 1480
||||||||||||| |||||||||| ||||||| |||||||||||||| || | |||||||
Sbjct 978 GAATCCAGAAGTACGATCTCGTGGTGCTGGAGTAGGAAGTAAAGGCGGGA-TGGGAAGCG 1036
Query 1481 CTCCAGCCAGCGGAAAGCAAGGAATGGCTGATGCTCTTGCTGAGATAACAAAGAAGTCTC 1540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1037 CTCCAGCCAGCGGAAAGCAAGGAATGGCTGATGCTCTTGCTGAGATAACAAAGAAGTCTC 1096
Query 1541 CTTATTTTCAGAAGATAGAAGAGGATGTTCGAATGTATATGACTTCAATCAATGAGCTTA 1600
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 1097 CTTATTTTCAGAAGATAGAAGAGGATGTTCGAATGTATATGAGTTCAATCAATGAGCTTA 1156
Query 1601 AGACAGATATTACAAAGTTCAAGAACAAGGACATTACCGAGCTTCAAAAATTTCACCATC 1660
||||||||||||| |||||||||||||||||||| ||||||||||| |||||||||||||
Sbjct 1157 AGACAGATATTACCAAGTTCAAGAACAAGGACATCACCGAGCTTCAGAAATTTCACCATC 1216
Query 1661 GTATTGAATCAGTTCTTGAGAAACTAGAAGATGAAACACAGGTTCTAGCAAGATGTGAAG 1720
|| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 1217 GTGTTGAATCAGTTCTTGAGAAACTAGAAGATGAAACACAGGTTCTAGCAAGGTGTGAAG 1276
Query 1721 GATTCCCGCATAAGAAACTCGAAGCAATAAGAATGGCTGCTGCATTATACTCGAAGCTGG 1780
|||| || |||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1277 GATTTCCTCATAAGAAACTCGAAGCAATAAGAATGGCTGCTGCATTATACTCAAAGCTGC 1336
Query 1781 AGGGTATGATCAAAGAGCTAAAGAACTGGAAGATAGAGTCTCCGGCGAACCAACTTTACG 1840
||||||||||||||||||||| ||||||||||||||||||||| || ||||| |||| ||
Sbjct 1337 AGGGTATGATCAAAGAGCTAACGAACTGGAAGATAGAGTCTCCCGCCAACCAGCTTTTCG 1396
Query 1841 ATAAGACTGAGCGTTACTTTGCAAAGGCAAGTCATAGAAATACTGATTTTCGCTTGTTTC 1900
| |||||||| |||||||||||||||||||||||||| |||||||||||| || |||||
Sbjct 1397 ACAAGACTGAACGTTACTTTGCAAAGGCAAGTCATAGGAATACTGATTTTT-CTAGTTTC 1455
Query 1901 TTCGCCTTTCtttttttCTGATCAGAAAAGAGATTGAAACTCTAGACCAGATCAAAGCAG 1960
|||||||||| |||||| ||| || |||||||||||||||||||||||||||
Sbjct 1456 TTCGCCTTTCCTTTTTT-TGA---GA-------TTGAAACTCTAGACCAGATCAAAGCAG 1504
Query 1961 AAGAGGAAAAGAAGTTCAAGAGCAATAACATCCATTTCGACTTCAACATCCTTGTTCAGA 2020
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 1505 AAGAGGAAAAGAAGTTCAAGAGCAATAACATCCATTTCGACTTCAATATCCTTGTTCAGA 1564
Query 2021 TCAAGGAATTAATGGTTGATATCTCTTCAGGCTGTATGGAACTGGCATTGAAGGAAAAGA 2080
| |||||||||||||||||||||||||| ||||| ||||||||||| |||||||||||||
Sbjct 1565 TTAAGGAATTAATGGTTGATATCTCTTCGGGCTGCATGGAACTGGCGTTGAAGGAAAAGA 1624
Query 2081 GAGAAGCAAAGATTGCATCGCAAACTACTGCAGAATCACTCGAGGCAAAGCCAAGCACGA 2140
||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
Sbjct 1625 GAGAAGCAAAGATTGCATCGCAAACTACTGCAGAATCACGCGAGGCAAAGCCAAGCACAA 1684
Query 2141 AGAATAAGACTCCAGGATGGGCTAAAACGTTGTGGAGGGCATTTCATTTTGCATACAGAG 2200
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1685 AGAATAAGACTCCAGGATGGGCTAAAACGCTGTGGAGGGCATTTCATTTTGCATACAGAG 1744
Query 2201 TTTACACATTTGCTGGTGGGCACGACGATCGTGCTGATAAGCTTACAAGAGAGTTGGCTG 2260
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1745 TTTACACATTTGCTGGCGGGCACGACGATCGTGCTGATAAGCTTACAAGAGAGTTGGGTG 1804
Query 2261 AGGAGATCGAGCAGATTCTTGGAAACCAATGACTTGTGACTTATGTCTCGGCTGAAAATG 2320
|||||||||| | ||||||||| ||||| ||||| ||||||||||| |||||||||||||
Sbjct 1805 AGGAGATCGAACTGATTCTTGGTAACCAGTGACTCGTGACTTATGTATCGGCTGAAAATG 1864
Query 2321 TCACAAAGGTATTGGAGTCTTTATAGAAGACAGTTATTAAAGAGAATAAGTGATTTAGGT 2380
||||||| || ||| ||||||| ||||||||| ||||||||||||||||||||||||| |
Sbjct 1865 TCACAAAAGTGTTG-AGTCTTTTTAGAAGACATTTATTAAAGAGAATAAGTGATTTAGAT 1923
Query 2381 TAACATGTTGTAATGTAGTTAGTTACCAAAAAGCTGTTGTACTCTGATAAGTCTTCTCAC 2440
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 1924 -AACATGTTGTAATGTAGTTAGTTACCAAAAAGCTTTTGTACTCTGATAAGTCTTCTCAC 1982
Query 2441 TGTATGACTGCACCTATAAAAAAGAAAATAGCATATCAAGGTTACC 2486
|| ||||||| ||||||| ||||||||||||||||| || ||||||
Sbjct 1983 TGAATGACTGAACCTATAGAAAAGAAAATAGCATATTAAAGTTACC 2028
Score = 150 bits (81), Expect = 4e-35
Identities = 92/97 (95%), Gaps = 2/97 (2%)
Strand=Plus/Plus
Query 343 ATGGTGATGCGTACGATGAAAGATCTCCATAAGCTCTGTCCTGAGATCATTGACAGCTCC 402
||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 1 ATGGTGATGCGTACGATGAAAGATCTCCATAAGCTTTGTCCTGAGATCATTGACAGCTCG 60
Query 403 CAAATCCTCGAA-ATGAGACGTGAAGAAGTTGACAAG 438
||||||||| || |||||||||| |||||||||||||
Sbjct 61 CAAATCCTC-AATATGAGACGTGCAGAAGTTGACAAG 96
> Ahg475218 jgi|Araly1|475218|fgenesh2_kg.2__348__AT1G61080.1
Length=2640
Score = 233 bits (126), Expect = 4e-60
Identities = 225/272 (83%), Gaps = 9/272 (3%)
Strand=Plus/Plus
Query 333 TATATCCAATATGGTGATGCGTACGATGAAAGATCTCCATAAGCTCTGTCCTGAGATCAT 392
||||||| ||||||||||| ||| |||||||||||||| || | ||||||||||||||
Sbjct 400 TATATCC-TTATGGTGATGCATACAATGAAAGATCTCCAGAAAATTTGTCCTGAGATCAT 458
Query 393 TGACAGCTCCCAAATCCTCGAAATGAGACGTG-AAGAAGTTGACAA-GTTGCTTGACAAT 450
| | |||||||| || | ||||| ||||||| || | || || || ||| |||||| ||
Sbjct 459 TCATAGCTCCCATATAATGGAAATTAGACGTGCAA-ATGTCGATAAGGTT-CTTGACCAT 516
Query 451 TTCTACAACGCTTTGAAATCAATTGGAGATTCATGGATCGATGACCACGAATGGATCATC 510
|||| | ||||||||||| ||||||||||| ||||| ||| ||| ||||||||| | |
Sbjct 517 TTCTTTAGTGCTTTGAAATCCATTGGAGATTCGTGGATTGATAACCCCGAATGGAT-AAC 575
Query 511 -AAATCCAAGTA-TAGAAGCAGTAACATAAGGAAGAATCTGTCTGATCGACTTGTGGAAA 568
||||||||||| | | || || | | | ||||||||| ||| |||||||| |||||||
Sbjct 576 TAAATCCAAGTACT-GGAGTAGCAGCGTCGGGAAGAATCAGTCCGATCGACTAGTGGAAA 634
Query 569 AGGTGTTAGCTGCATTAGATGGACTGATTAAG 600
||||||||||||||||||||||||||||||||
Sbjct 635 AGGTGTTAGCTGCATTAGATGGACTGATTAAG 666
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 93702002700
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5