BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G11080.2
Length=1674
Score E
Sequences producing significant alignments: (Bits) Value
Ahg471242 jgi|Araly1|471242|fgenesh2_kg.1__1196__AT1G11080.1 2457 0.0
> Ahg471242 jgi|Araly1|471242|fgenesh2_kg.1__1196__AT1G11080.1
Length=1875
Score = 2457 bits (1330), Expect = 0.0
Identities = 1462/1526 (96%), Gaps = 7/1526 (0%)
Strand=Plus/Plus
Query 1 ATCATCTCACTACAATTCTTGATCTTCTTC-TTAACTTATACCTCAAATAATGGATAATT 59
||||||||||||||||||||||||||| || | ||||||||| || | ||||||| |||
Sbjct 206 ATCATCTCACTACAATTCTTGATCTTC-TCATCAACTTATACTTC--A-AATGGATCATT 261
Query 60 ATCAGACCAAGAATATATCTAATCTATTAACTTC-TTTGTGTTTTACCACTCTCTTAATA 118
|||| ||||| || |||| ||||||||| | ||| ||| |||||||||||||| ||||||
Sbjct 262 ATCACACCAATAACATATATAATCTATTTA-TTCTTTTTTGTTTTACCACTCTTTTAATA 320
Query 119 TTAGCTCCGGTGGTTATATGCACTAGACAACACCGGTTCGATAGCCCGAAAAGAAGCTTG 178
||||| ||||||||| |||||||||||||||||||||| |||||||||||||||||||||
Sbjct 321 TTAGCCCCGGTGGTTTTATGCACTAGACAACACCGGTTTGATAGCCCGAAAAGAAGCTTG 380
Query 179 TTGGCCAACGAGCAAGATTTAGTGACAGGTTTGCCTGGACAGCCTGATGTGAGTTTCAGA 238
||||||||||| ||||||||||| |||| ||| ||||||||||||||||||| ||||||
Sbjct 381 TTGGCCAACGAACAAGATTTAGTAACAGATTTACCTGGACAGCCTGATGTGAATTTCAGG 440
Query 239 CATTATGCCGGATATGTCCCTGTCGATGAATCCAACGGAAGAGCTATGTTTTACTGGTTC 298
||||||||||| ||||| ||||| ||||||||||||||||||||||||||||| ||||||
Sbjct 441 CATTATGCCGGTTATGTTCCTGTGGATGAATCCAACGGAAGAGCTATGTTTTATTGGTTC 500
Query 299 TTTGAGGCCATGGATCTCCCGAAAGAGAAACCTCTAGTCCTCTGGCTTAATGGAGGTCCA 358
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 501 TTTGAGGCCATGGATCTCCCTAAAGAGAAACCTCTAGTCCTCTGGCTTAATGGAGGTCCA 560
Query 359 GGTTGTTCTTCTGTGGGATATGGGGCAACACAAGAAATTGGTCCTTTTCTCGTGGACACC 418
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 561 GGTTGTTCTTCTGTGGGATATGGAGCAACACAAGAAATTGGTCCTTTTCTCGTGGACACC 620
Query 419 AACGGAAACGGACTTAACTTTAATCCATACGCATGGAATAAAGAGGCCAACATGCTGTTT 478
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 621 AACGGAAACGGACTTAACTTTAATCCATACGCATGGAATAAAGAGGCCAACATGCTGTTT 680
Query 479 TTAGAATCTCCCGTCGGTGTTGGCTTTTCGTATTCAAACACAAGTAGCGATTATCAAAAA 538
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 681 TTAGAATCTCCCGTCGGTGTTGGCTTTTCGTATTCAAACACAAGTAGCGATTATCAAAAA 740
Query 539 CTTGGAGATGACTTTACAGCAAGAGACGCATACACTTTTCTTTGCAACTGGTTCGAGAAA 598
|||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||
Sbjct 741 CTTGGAGATGACTTTACAGCAAGAGACGCATACATTTTTCTTTGCAACTGGTTTGAGAAA 800
Query 599 TTCCCAGAGCACAAAGAAAATACGTTCTATATCGCGGGTGAAAGTTATGCAGGAAAATAC 658
|||||||| |||||||||| |||||||| |||||||||||||||||||||||||||||||
Sbjct 801 TTCCCAGAACACAAAGAAAGTACGTTCTTTATCGCGGGTGAAAGTTATGCAGGAAAATAC 860
Query 659 GTACCTGAGCTAGCAGAGGTTGTATACGATAACAATAACAATAACAAGAAGAATGGTTCA 718
||||| ||| ||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 861 GTACCCGAGTTAGCAGAGGTTGTGTACGATAACAATAACAATAACAAGAAGAATGGTTCA 920
Query 719 TCGTTTCACATCAATCTTAAGGGTATTTTGTTGGGGAATCCTGAGACATCAGATGCAGAA 778
||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||
Sbjct 921 TCGTTTCACATCAATCTTAAGGGTATTCTGTTGGGGAATCCTGAGACATCAGACGCAGAA 980
Query 779 GATTGGAGAGGTTGGGTGGATTATGCATGGAGCCATGCAGTAATATCAGATGAGACTCAT 838
||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||
Sbjct 981 GATTGGAGAGGTTGGGTGGATTATGCATGGAGCCATGCAGTGATATCAGATGAGACGCAT 1040
Query 839 AGGATCATAACCAGGACGTGCAATTTCAGCAGCGATAATACTTGGAGCAACGATGAGTGC 898
||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||
Sbjct 1041 AGGATCATAACCAGGACATGCAATTTCAGCAGCGACAATACTTGGAGCAACGATGAGTGC 1100
Query 899 AATGAGGCCGTAGCAGAAGTTCTCAAGCAGTATCACGAGATAGATATCTATAGCATCTAT 958
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1101 AACGAGGCCGTAGCAGAAGTTCTCAAGCAGTATCACGAGATAGATATCTATAGCATCTAT 1160
Query 959 ACCTCAGTTTGCATAGGAGATTCTGCGCGATCGTCTTACTTTGATTCAGCGCAATTCAAA 1018
|| || |||||||||||||||||||||||||||||||||||| |||| | ||||||||||
Sbjct 1161 ACTTCGGTTTGCATAGGAGATTCTGCGCGATCGTCTTACTTTAATTCTGTGCAATTCAAA 1220
Query 1019 ACAAATTCTCGCATTAGCTCCAAGAGGATGCCACCGAGGCTCATGGGTGGATATGATCCA 1078
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1221 ACAAATTCTCGCATTAGCTCCAAGAGGATGCCACCGAGGCTCATGGGTGGATATGATCCG 1280
Query 1079 TGCTTAGATGATTACGCGAGAGTATTTTACAACAGAGCAGATGTTCAGAAGTCTCTTCAT 1138
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1281 TGCTTAGATGATTACGCGAGAGTATTTTACAACAGAGCAGATGTTCAGAAGTCTCTTCAT 1340
Query 1139 GCGAGTGATGGAGTTAATCTCAAGAACTGGAGCATTTGCAACATGGAGATCTTTAATAAT 1198
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1341 GCCAGTGATGGAGTTAATCTCAAGAACTGGAGCATTTGCAACATGGAGATCTTTAATAAT 1400
Query 1199 TGGACTGGTTCAAACCCGTCGGTTTTGCCTATTTACGAGAAACTCATCGCCGGAGGATTA 1258
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1401 TGGACTGGTTCAAACCCGTCGGTTTTGCCTATTTACGAGAAACTCATCGCCGGAGGATTA 1460
Query 1259 AGAATATGGGTTTACAGTGGTGACACAGACGGAAGAGTTCCAGTACTTGCGACTCGTTAT 1318
|||||||||||||||||||||||||||||||||||||| || |||||||||||||| |||
Sbjct 1461 AGAATATGGGTTTACAGTGGTGACACAGACGGAAGAGTACCCGTACTTGCGACTCGGTAT 1520
Query 1319 AGCTTAAACGCACTCGAATTACCCATCAAGACAGCTTGGAGGCCATGGTACCATGAAAAA 1378
||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1521 AGCTTAAGCGCACTCGAATTACCCATCAAGACAGCTTGGAGGCCATGGTACCATGAGAAA 1580
Query 1379 CAGGTAAGTGGGTGGCTTCAAGAATACGAAGGTTTAACGTTTGCTACGTTCAGAGGAGCT 1438
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 1581 CAGGTAAGTGGGTGGCTTCAAGAATACGAAGGTCTAACGTTTGCTACGTTCAGAGGAGCT 1640
Query 1439 GGACATGCGGTGCCTTGCTTCAAACCAAGCAGCTCTCTCGCCTTTTTCTCGGCGTTTCTC 1498
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1641 GGACATGCGGTGCCTTGCTTTAAACCAAGCAGCTCTCTCGCCTTTTTCTCGGCGTTTCTT 1700
Query 1499 AGCGGAGTTCCTCCTCCGCCATCGCG 1524
||||||||||||||||| || |||||
Sbjct 1701 AGCGGAGTTCCTCCTCCACCGTCGCG 1726
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 62772723760
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5