BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G11090.1
Length=1172
Score E
Sequences producing significant alignments: (Bits) Value
Ahg919915 jgi|Araly1|919915|scaffold_101196.1 1602 0.0
Ahg471244 jgi|Araly1|471244|fgenesh2_kg.1__1198__AT1G11100.1 132 7e-30
> Ahg919915 jgi|Araly1|919915|scaffold_101196.1
Length=1014
Score = 1602 bits (867), Expect = 0.0
Identities = 957/1001 (96%), Gaps = 3/1001 (0%)
Strand=Plus/Plus
Query 39 CACTCCTCGATGTCTGATCAACAGCTTGAAACAGAGATCAACTTCTGGGGAGAGACTTCA 98
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||
Sbjct 14 CACTCCTCGATGTCTGATCACCAGCTTGAAACAGAGATCAACTTCTGGGGAGAGACGTCA 73
Query 99 GAAGAAGATTACTTTAATCTCAAAGGCATCATCGGCTCCAAATCTTTCTTCACTTCCCCT 158
|||||||| ||||| |||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 74 GAAGAAGACTACTTCAATCTCAAAGGCATCATCGGTTCCAAATCTTTCTTCACTTCCCCT 133
Query 159 CGAGGTCTCAACCTCTTCACTCGTTCATGGCTTCCCTCTTCCTCTTCTCCGCCACGTGGT 218
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 134 CGAGGTCTCAACCTCTTCACTCGTTCATGGCTTCCCTCTTCCTCTTCCCCGCCACGTGGT 193
Query 219 CTCATCTTCATGGTCCATGGCTACGGCAATGACGTCAGCTGGACTTTCCAGTCCACTCCC 278
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 194 CTCATCTTCATGGTCCATGGCTATGGCAATGACGTCAGCTGGACTTTCCAGTCCACTCCC 253
Query 279 ATTTTTCTTGCTCAGATGGGTTTCGCTTGCTTTGCTCTCGACATCGAAGGTCATGGCCGA 338
|| ||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 254 ATCTTTCTCGCTCAGATGGGTTTCGCTTGCTTTGCTCTCGACATTGAAGGTCATGGCCGA 313
Query 339 TCTGACGGTGTCCGCGCCTATGTTCCCTCCGTAGATCTAGTCGTCGATGACATCATCTCT 398
|||||||| ||||||||||||||||| ||||||||||| |||||||||||||||||||||
Sbjct 314 TCTGACGGCGTCCGCGCCTATGTTCCTTCCGTAGATCTCGTCGTCGATGACATCATCTCT 373
Query 399 TTCTTTAATTCGATTAAGCAAAACCCTAAATTTCAAGGCTTACCTCGGTTTCTCTTCGGA 458
||||| ||||||||||||||||||||||| |||||||||||||| |||||||||||||||
Sbjct 374 TTCTTCAATTCGATTAAGCAAAACCCTAAGTTTCAAGGCTTACCCCGGTTTCTCTTCGGA 433
Query 459 GAATCAATGGGCGGTGCGATTTGTCTTTTGATCCAATTCGCTGATCCGTTAGGGTTTGAT 518
||||||||||||||||||||||||||||||||||| |||||||||||| ||||||| |||
Sbjct 434 GAATCAATGGGCGGTGCGATTTGTCTTTTGATCCATTTCGCTGATCCGGTAGGGTTCGAT 493
Query 519 GGAGCGGTTTTGGTTGCTCCCATGTGTAAAATCTCGGACAAGGTGAGACCTAAATGGCCG 578
||||||||||||||||||||||||||||||||||| || ||||| |||||||||||||||
Sbjct 494 GGAGCGGTTTTGGTTGCTCCCATGTGTAAAATCTCCGATAAGGTAAGACCTAAATGGCCG 553
Query 579 GTTGATCAGTTTCTGATTATGATCTCAAGATTCTTGCCGACTTGGGCGATTGTTCCGACG 638
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 554 ATTGATCAGTTTCTGATTATGATCTCAAGATTCTTGCCGACTTGGGCGATTGTTCCCACA 613
Query 639 GAAGATCTGTTGGAGAAGTCGATCAAAGTTGAAGAGAAGAAACCGATTGCCAAGAGGAAT 698
|| |||||| ||||||| |||||||||||||||||||||||||||||||| ||||||||
Sbjct 614 GAGGATCTGGTGGAGAAATCGATCAAAGTTGAAGAGAAGAAACCGATTGCGAAGAGGAAC 673
Query 699 CCGATGAGGTACAATGAGAAACCGCGGTTAGGTACAGTGATGGAGCTACTTAGGGTTACT 758
|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 674 CCGATGAGGTACAATGAGAAACCGAGGTTAGGTACAGTGATGGAGCTACTTAGGGTTACG 733
Query 759 GATTACTTAGGGAAGAAGCTAAAAGATGTTAGCATTCCCTTCATTATTGTGCACGGAAGT 818
|||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||
Sbjct 734 GATTACTTAGGGAAGAAGCTAAAAGATGTTAGCATTCCTTTCATTGTTGTGCACGGAAGT 793
Query 819 GCAGATGCTGTGACTGATCCTGAAGTGAGCAGAGAGTTGTACGAACATGCTAAGAGCAAA 878
|||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 794 GCAGATGCTGTGACCGATCCTGATGTGAGCAGAGAGTTGTACGAACATGCTAAGAGCAAA 853
Query 879 GATAAGACATTGAAGATCTATGACGGGATGATGCATTCGATGTTGTTCGGTGAACCCGAC 938
|| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 854 GACAAGACATTGAAGATCTATGAAGGGATGATGCATTCGATGTTGTTCGGTGAACCCGAC 913
Query 939 GACAACATTGAGATTGTTCGTAAAGATATTGTTAGCTGGTTGAATGATAGATGTGGTGG- 997
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 914 AACAACATTGAGATTGTTCGTAAAGATATTGTTAGTTGGTTGAATGATAGATGTGGTGGT 973
Query 998 --AGACAAAACCAAAACCCAGGTTTGAATTCATTGTTTGTC 1036
|||||||||||||||| ||||||||||||||||||||||
Sbjct 974 GGAGACAAAACCAAAACCTAGGTTTGAATTCATTGTTTGTC 1014
> Ahg471244 jgi|Araly1|471244|fgenesh2_kg.1__1198__AT1G11100.1
Length=3926
Score = 132 bits (71), Expect = 7e-30
Identities = 83/89 (93%), Gaps = 0/89 (0%)
Strand=Plus/Minus
Query 1084 CATGGAAAAATGTTTGGATTAAGTGACTAGAAATTGATGTACACATTGTTCTTGCAGGTT 1143
||||||| | | ||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 3926 CATGGAACAGTATTTGGATTAAGTGACTAGAAATTGATGTACACATTGTTCTTGCAGATT 3867
Query 1144 TTTCTTGATAATATTCAGTTTCATTCTAT 1172
|||||||||||| |||| |||||||||||
Sbjct 3866 TTTCTTGATAATGTTCAATTTCATTCTAT 3838
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 43726985799
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5