BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G11100.2
Length=4072
Score E
Sequences producing significant alignments: (Bits) Value
Ahg471244 jgi|Araly1|471244|fgenesh2_kg.1__1198__AT1G11100.1 3038 0.0
Ahg475211 jgi|Araly1|475211|fgenesh2_kg.2__341__AT1G61140.1 804 0.0
> Ahg471244 jgi|Araly1|471244|fgenesh2_kg.1__1198__AT1G11100.1
Length=3926
Score = 3038 bits (1645), Expect = 0.0
Identities = 1940/2083 (93%), Gaps = 17/2083 (1%)
Strand=Plus/Plus
Query 1 ATGAGTAAGAAGGATTCAGTATTTCAGTCGCAAGCGGATGATTTCTCTGGTGGCTTTGAA 60
|||||| |||||||||||||||||||||||||||||||||||| |||||||||||||| |
Sbjct 1 ATGAGTGAGAAGGATTCAGTATTTCAGTCGCAAGCGGATGATTACTCTGGTGGCTTTGGA 60
Query 61 TTTGGAGCCGACGACGAGGATTTTATGATTGACATAGAGGCGATTTATCGGATTCTGGAT 120
||||||||||| ||||||||||||||||||||||| || ||||||||| ||||||| |||
Sbjct 61 TTTGGAGCCGAAGACGAGGATTTTATGATTGACATTGACGCGATTTATAGGATTCTTGAT 120
Query 121 GA-AAGCCCTGTTTCTATGGAGGTTAGTCAAG-AAATAATGTCTCCGGTTGGTTCATCTG 178
|| ||| |||| |||||||||||||||| ||| |||| ||| ||| |||||||||| ||
Sbjct 121 GAGAAG-CCTGATTCTATGGAGGTTAGTGAAGAAAAT-ATGACTCAAGTTGGTTCATATG 178
Query 179 -TGGTAGAGTCTGGCGAGTTTAGGAACACACTGATGCAAA---GATCTCAGGCCACTGGT 234
| |||||||||| |||| ||| ||||||||||| ||||| |||||||||||||||||
Sbjct 179 CT-GTAGAGTCTGACGAGCTTACGAACACACTGACGCAAAGTGGATCTCAGGCCACTGGT 237
Query 235 TGGTTTCCTTACCGGGATTTGTATGGTCTTGGAGCCTCACAAAGTGAAATAGCAGAGCCA 294
||||||||||||| |||||||||||||| || ||||||||||||||||| ||||| || |
Sbjct 238 TGGTTTCCTTACCCGGATTTGTATGGTCCTGAAGCCTCACAAAGTGAAACAGCAGTGCAA 297
Query 295 AGTTCATTTTCTGACCCTGAGAATGGACGATTGGGACTAAGTGCGACTTGTTAT-TCTGA 353
||||||||| ||||||| ||||||||| ||||||||| |||||||||||||| | |||||
Sbjct 298 AGTTCATTTGCTGACCCAGAGAATGGAGGATTGGGACCAAGTGCGACTTGTT-TCTCTGA 356
Query 354 CTACGGTGGCAATGTGGTCTCCTTTCCTGTAAATTGTGAAGATGGCACTGTATCCATCCT 413
||| ||||||||||||||||||| |||||| |||||||||||||||| |||||||| |||
Sbjct 357 CTATGGTGGCAATGTGGTCTCCTATCCTGTGAATTGTGAAGATGGCAATGTATCCAACCT 416
Query 414 GGATGACATGAGAATTGAATCCAAATTTACACCTTGCAGTCCCACTACGATGACTACCTA 473
| |||||||||||||||| ||||||||||||||||||||| |||||| ||||||| ||||
Sbjct 417 GTATGACATGAGAATTGATTCCAAATTTACACCTTGCAGTTCCACTATGATGACTCCCTA 476
Query 474 TCTCAATAACATGCCTGGAAATGACTCAGGAATTGGAGCCACGCAAAATTCTTCCCTGAT 533
| |||||| |||||||||||||||||||||||||||||| ||||||||||| |||||| |
Sbjct 477 TTTCAATACCATGCCTGGAAATGACTCAGGAATTGGAGCTACGCAAAATTCCTCCCTGGT 536
Query 534 GTCTCATTTCTC-CCCTAATTCCAGTTCTATTGTGGACTGTGCCTCCTCTGAACCATATG 592
|||||||||| | ||||| |||||||||| | || |||||||| |||||||||||||
Sbjct 537 GTCTCATTTC-CATTATAATTACAGTTCTATTATTGATTGTGCCTCTTCTGAACCATATG 595
Query 593 GCCACCATACAATGGATGCACCCTTATCAGAAGTTTCTCCCAATTTGGTTCCTGGTTACG 652
||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||
Sbjct 596 GCCACCATACAATGGATGCACCCTTATCAGAAGTTTCCCCCAATTTGGTTCCAGGTTACG 655
Query 653 CATTTCAGTTCTTTCCCAAGAAAGAAGAACTGCTAAATGACTTGAAGAATGAGTTTATCC 712
||||||||||||||||||| || |||||||| ||||||| ||||||| || ||||||||
Sbjct 656 CATTTCAGTTCTTTCCCAATAAGGAAGAACTTATAAATGATTTGAAGAGTGCGTTTATCC 715
Query 713 ACTGTCAGTCGGATGGTGCAAGCCGAATGGTTTTTGATAGACATGTAGGATTCGATAACG 772
|||||||||| |||||||||||||| ||||||||||| | |||||||||||| ||||| |
Sbjct 716 ACTGTCAGTCAGATGGTGCAAGCCGGATGGTTTTTGACAAACATGTAGGATTTGATAATG 775
Query 773 GAACTTCAGAGAGGAATTCTGGGCCTGATGTAAGCAGTGAAAGAGAACTCAGCCTCAAAT 832
||||||| ||||||||||||||||||||||| ||||||||||||||||||||| ||||||
Sbjct 776 GAACTTCGGAGAGGAATTCTGGGCCTGATGTGAGCAGTGAAAGAGAACTCAGCATCAAAT 835
Query 833 GTGAAATCATTCCTTCAGTTTCCCCTGTCTGTGTCAAACCATACAACAGTTCTGATGGTC 892
|||||||||||||||||||||||||| ||||||||| |||||||| |||| |||||| |
Sbjct 836 ATGAAATCATTCCTTCAGTTTCCCCTGCCTGTGTCAATCCATACAATAGTTTTGATGGGC 895
Query 893 ATCAAGTTGAAAAGGAGCTTGAGCAGCCTGATAATTGTTCAAGCAGTTTTCAGGAGAATA 952
|||||||||| |||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 896 ATCAAGTTGATAAGGAGCTTGAGCAGCCTTCCAATTGTTCAAGCAGTTTTCAGGAGAAT- 954
Query 953 G-AGCAGTCCATATGAAGGTTAAACCAGAGCTTG-CGTTGGAGAACACGGTTTACAGTTC 1010
| |||||||| | ||||||||||||||||||||| | ||||||||||||||| |||| |
Sbjct 955 GAAGCAGTCCCTGTGAAGGTTAAACCAGAGCTTGAC-CTGGAGAACACGGTTTTCAGTAC 1013
Query 1011 AATTCCTGGGAACTATAGTAGATGTAGTGATGTTCATACAGTTGGAGGAACGACACTGCC 1070
| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1014 AGTTCCTGGGAACTATAGTATATGTAGTGATGTTCATACAGTTGGAGGAACGACACTGCA 1073
Query 1071 ATGGTCTGGTGTCTCTAATTGCGCAATCTCCTATCAGACAGATGTCGGGAAAGAATACCC 1130
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 1074 ATGGTCTGGTGTCTCTAATTGCGCAATCTCCTATCAGGCAGATGTCGGGAAAGAATACCC 1133
Query 1131 TTTTATCCCACCTCAGACTGCTTTCCCTGGTCAAGATATTGACGGCAGGAGCTTCTATAG 1190
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1134 ATCTATCCCACCTCAGACTGCTTTCCCTGGTCAAGATATTGACGGCAGGAGCTTCTATAA 1193
Query 1191 TTGTTTTGATTCAGATGACTGTTTTCAAAACGTAACAGATCCTGACCCAGAAACATCACG 1250
|||||||| ||||||||||||||| ||||||||||||||||||||||||| |||||||||
Sbjct 1194 TTGTTTTGTTTCAGATGACTGTTTGCAAAACGTAACAGATCCTGACCCAGCAACATCACG 1253
Query 1251 CACTGAGTCTTTGGATTATCTGGTAGGAGACGAGGACCATGAATATATTAAGAGGACATG 1310
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
Sbjct 1254 CACTGAGTCTTTGGATTATCTGGTAGGAGACGAGGACCATGAATATATTGGGAGGACAGG 1313
Query 1311 CTTTAATCTTTCTAGTTTCAGCTCTGGAACAGTTGAAAGTCTTTCATCAAAACGAATACC 1370
|||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1314 CTTTAATCTTTCTAGTCTCAGCTCTGGAACAGTTGAAAGTCTTTCATCAAAACGTATACC 1373
Query 1371 CGAACGAGAAGATGATTCTGAAATCCATAAAATAGAATCCTATGGTGAATTTGTTAATCC 1430
|||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1374 CGAAGGAGATGATGATTCTGAAATCCATAAAATAGAATCCTATGGTGAATTTGTTAATCC 1433
Query 1431 ACACCAATATCTACCTGTGCAGAGACCAGTGTTTTCTTCAGAACATTCTACAGGTAGTCA 1490
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1434 ACACCAATATCTAGCTGTGCAGAGACCAGTGTTTTCTTCAGAACATTCTACAGGTAGTCA 1493
Query 1491 AACTCTTAATAATTGTGGAGGCTTGAAGTTTGAGTCAAACAAGGGAAACATGAATTTTCA 1550
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1494 AACTCTTAATAACTGTGGAGGCTTGAAGTTTGAGTCAAACAAGGGAAACATGAATTTTCA 1553
Query 1551 TGCAGACTTGCAGGATCTTTCTCAGCATAGTTCTGAAGCAAGTCCTCCTGACGGTGTCTT 1610
|||||||||||||| ||||||||||| | |||||||||||||||||||||| ||||||||
Sbjct 1554 TGCAGACTTGCAGGTTCTTTCTCAGCCTCGTTCTGAAGCAAGTCCTCCTGAAGGTGTCTT 1613
Query 1611 GGCAGTGTCGCTTCTTAGACATCAGCGTATTGCATTGTCGTGGATGTCCCAAAAGGAGAC 1670
|||||| |||||||||||||||||||| ||||||||| ||||||||||| ||||||||||
Sbjct 1614 GGCAGTCTCGCTTCTTAGACATCAGCGGATTGCATTGGCGTGGATGTCCGAAAAGGAGAC 1673
Query 1671 AAGCGGGAACCCCTGTTTTGGGGGCATTCTTGCTGATGATCAGGGACTTGGAAAAACAGT 1730
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 1674 AAGCGGGAACCCCTGTTTTGGGGGGATTCTTGCTGATGATCAGGGACTTGGAAAAACAGT 1733
Query 1731 TTCCACAATAGCGCTTATACTGACAGAACGGTCTACACCTTATCTACCATGTGAAGAAGA 1790
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1734 TTCCACAATAGCGCTTATACTGACAGAACGGTCTACACCTTATCTACCATGTGAAGAAGA 1793
Query 1791 TTCAAAGAATGGAGGATGCAATCAATCTGATCACTCTCAAGTGGTTTTCAATGAAAACAA 1850
|||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||
Sbjct 1794 TTCAAAGAATGGAGGAAGCAATCAATTTGATCACTCTCAAGTGGTTTTCAATGAAAACAA 1853
Query 1851 AGTTGTCGAAGATAGTTTATGCAAGATGAGGGGAAGGCCAGCTGCCGGAACTCTTATTGT 1910
||| | ||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 1854 AGTCGGCGAAGATAGTTTATGCAAGATGAGGGGAAGGCCAGCTGCTGGAACTCTTATTGT 1913
Query 1911 CTGTCCCACTAGTTTGATGAGACAATGGGCTGATGAATTACGCAAGAAGGTTACTCTTGA 1970
||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 1914 CTGTCCCACTAGTCTGATGAGACAATGGGCTGATGAATTATGCAAGAAGGTTACTCTTGA 1973
Query 1971 AGCACATCTCTCTGTGCTGGTATACCACGGTTGCAGCAGAACAAAGGATCCTCACGAGCT 2030
|||| |||| ||||| ||||| |||||||| |||| ||||||||||||||||||||||||
Sbjct 1974 AGCAAATCTATCTGTTCTGGTGTACCACGGCTGCAACAGAACAAAGGATCCTCACGAGCT 2033
Query 2031 AGCTAAATATGATGTCGTCATTACCACATATTCCCTTGTGAGC 2073
||||||||||||||| |||||||||||||||||||||||||||
Sbjct 2034 AGCTAAATATGATGTTGTCATTACCACATATTCCCTTGTGAGC 2076
Score = 2828 bits (1531), Expect = 0.0
Identities = 1751/1857 (94%), Gaps = 16/1857 (1%)
Strand=Plus/Plus
Query 2206 AAGAGGAAACATATGGATTGTGAACCTGTTGAGTTTCTGTCTGGCCCTCTCGCGCAAGTT 2265
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2077 AAGAGGAAACATATGGATTGTGAACCTGTTGAGTTTCTGTCTGGCCCTCTCGCGCAAGTT 2136
Query 2266 TCATGGTTTAGAGTTGTTCTAGATGAAGCTCAGAGCATTAAGAATTACAAAACCCAAGCT 2325
||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 2137 TCATGGTATAGAGTTGTTCTTGATGAAGCTCAGAGCATTAAGAATTACAAAACCCAAGCT 2196
Query 2326 TCAATAGCATGTTCAGGCCTTCATGCTAAGCGTAGGTGGTGTTTGTCTGGCACTCCTATC 2385
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2197 TCAACGGCATGTTCAGGCCTTCATGCTAAGCGTAGGTGGTGTTTGTCTGGCACTCCTATC 2256
Query 2386 CAGAATTCAATTGCTGACCTCTACAGCTACTTCAGATTTCTTAAGTATGATCCTTATTCT 2445
||||||||||||| |||||||||||||||||||||||| |||||||||||| ||||||||
Sbjct 2257 CAGAATTCAATTGATGACCTCTACAGCTACTTCAGATTCCTTAAGTATGATTCTTATTCT 2316
Query 2446 AGCTACCAAACGTTTTGTGAAACGATTAAGAACCCCATCAGTAGCTACCCGGGGGAAGGA 2505
|||||||||| ||||||||||||||||||||||| |||||||||||||||| | |||||
Sbjct 2317 TGCTACCAAACATTTTGTGAAACGATTAAGAACCCAATCAGTAGCTACCCGGTGAAAGGA 2376
Query 2506 TATAAAACGTTGCAGGCTATCCTGAAAAAAGTAATGCTTAGACGAACTAAAGATACACTT 2565
||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 2377 TATCAAACGTTGCAGGCTATCCTGAAAAAAATAATGCTTAGACGAACTAAAGATACACTT 2436
Query 2566 CTCGATGGAAAACCCGTGATCTCTTTACCTCCGAAGTCCATCGAGTTGAGGAGAGTGGAC 2625
|| ||||||||||| || ||||||||||||||||||||||| ||| ||||||||||||||
Sbjct 2437 CTTGATGGAAAACCGGTAATCTCTTTACCTCCGAAGTCCATTGAGCTGAGGAGAGTGGAC 2496
Query 2626 TTTACCAAGGAAGAACGTGATTTCTACTCAAAACTAGAGTGCGACTCTCGTGACCAATTC 2685
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2497 TTTACCAAGGAAGAACGTGATTTCTACTCAAAACTAGAGTGCGACTCTCGTGACCAATTC 2556
Query 2686 AAGGAATATGCAGAAGCTGGAACGGTGAAGCAAAATTATGTAAATATTTTGTTGATGCTG 2745
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 2557 AAGGAATATGCAGAAGCTGGAACGGTGAAGCAAAATTATGTAAATATTTTGTTGATGTTG 2616
Query 2746 CTGCGTCTTCGTCAAGCTTGTGGCCACCCTCTTCTAGTATCCAGTTTGTCATGGTCATCC 2805
||||||||||||||||| ||||| ||||||||||| |||||||||||| |||||||||||
Sbjct 2617 CTGCGTCTTCGTCAAGCGTGTGGTCACCCTCTTCTGGTATCCAGTTTGGCATGGTCATCC 2676
Query 2806 TCAGCTGAAATGGTTAAGAAGCTTCCATATGAGAAGCTAACCTTTCTTCTGCATCGCTTA 2865
||||||||||||| ||| |||||||||||||||||||||||||||||||||||| |||||
Sbjct 2677 TCAGCTGAAATGGCTAAAAAGCTTCCATATGAGAAGCTAACCTTTCTTCTGCATAGCTTA 2736
Query 2866 GAAGCTTCACTGGCAATTTGTGGTATCTGCAATGTTGCACCTAAAGATGCTGTTGTTTCA 2925
||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||
Sbjct 2737 GAAGCTTCACTGGCATTTTGTGGTATCTGCAATGGTGCACCTAAAGATGCTGTTGTTTCA 2796
Query 2926 CTCTGTGGTCACGTTTTCTGTAATCAGTGCATTTGCGAATGTCTTACTCGCGATAATAAT 2985
|||||||||||||||||||||| |||||||||| ||||| ||||||| ||| ||||||
Sbjct 2797 GTCTGTGGTCACGTTTTCTGTAAACAGTGCATTTATGAATGCCTTACTCACGACAATAAT 2856
Query 2986 CAATGCCCACTGTCA-TACTGCAAAGTCGGACTTGAAATTTCATCATTATTTTCCAGAGA 3044
||||||||||||||| | ||||||||||||| ||||||||||||||||||||||||||||
Sbjct 2857 CAATGCCCACTGTCACT-CTGCAAAGTCGGAGTTGAAATTTCATCATTATTTTCCAGAGA 2915
Query 3045 AACACTGGAAAATGCTATGCTTGACTTGCATAAACTTGATGCCCCATGTGATCGTACCAC 3104
||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||
Sbjct 2916 AACACTGGAAAATGCTATGCTTGGCTTGCATAAACTTGATGCTCCATGTGATCGTACCAC 2975
Query 3105 TTCAGATCCTGTTGGGAGTGGTGAGCCTTGT---GAAAATTTACCATGTGGTTCATCCAA 3161
||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||
Sbjct 2976 TTCAGATCCTGTTGGGAGTGGTGAGCCTTGTATTGAAAATTTACCATGTCGTTCATCCAA 3035
Query 3162 AATCAAGGCTGCTCTAGATATCTTGCAATCACTGAGCAGACCACAGAGTCCCG-CGACAG 3220
||||||||||||||||||||||||||||||||||||||||||||||||||| | |||| |
Sbjct 3036 AATCAAGGCTGCTCTAGATATCTTGCAATCACTGAGCAGACCACAGAGTCC-GACGACTG 3094
Query 3221 TAATGAATGATGTGAATCAGAGCTCCGAAAATGGAGAGAATAATCAGCAGCTTGACAAGT 3280
|||||||||||||| ||||||||||||||||||||||||| |||||||||||||| | ||
Sbjct 3095 TAATGAATGATGTGGATCAGAGCTCCGAAAATGGAGAGAAGAATCAGCAGCTTGAGAGGT 3154
Query 3281 CATTCAGTTTACCTGCAACTCCAGCGAAGAGTAGTGTGGGTGGTGTGGTTAATGTAGCTG 3340
|||||||||||||||||||||||||||||||||| |||| |||| ||||||| |||| ||
Sbjct 3155 CATTCAGTTTACCTGCAACTCCAGCGAAGAGTAGCGTGGATGGTCTGGTTAAGGTAGTTG 3214
Query 3341 GAGAAAAAGCCATTGTGTTTACCCAATGGACAAAGATGCTGGACCTCCTTGAAGCTGGTC 3400
||||||| ||||||||||||||||||||||||||||||||||| || |||||||||||||
Sbjct 3215 GAGAAAAGGCCATTGTGTTTACCCAATGGACAAAGATGCTGGATCTGCTTGAAGCTGGTC 3274
Query 3401 TTAAGAGTTCAGGTATTCAGTATAGAAGGTTTGATGGAAAAATGACAGTACCAGCTCGAG 3460
|||||||||| |||||||||||||||||||||||||| |||||||| ||||||||| |||
Sbjct 3275 TTAAGAGTTCGGGTATTCAGTATAGAAGGTTTGATGGGAAAATGACGGTACCAGCTAGAG 3334
Query 3461 ATGCAGCAGTACA-AGATTTTAATACTCTCCCTGATGTTTCTGTAATGATAATGTCTCTC 3519
||||||||||| | ||||||||||||||||||||| || |||||||||||||||||||||
Sbjct 3335 ATGCAGCAGTA-AGAGATTTTAATACTCTCCCTGAGGTGTCTGTAATGATAATGTCTCTC 3393
Query 3520 AAAGCTGCTAGTCTTGGGCTAAATATGGTGGCAGCTTGTCATGTTATCATGCTGGACTTA 3579
||||||||||||||||||||||||||||| || |||||||||||||| ||| ||||||||
Sbjct 3394 AAAGCTGCTAGTCTTGGGCTAAATATGGTTGCTGCTTGTCATGTTATAATGTTGGACTTA 3453
Query 3580 TGGTGGAACCCGACTACAGAAGATCAGGCAATTGACAGAGCACACCGTATTGGACAGACA 3639
||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||
Sbjct 3454 TGGTGGAACCCGACTACAGAAGACCAGGCAATTGACAGAGCCCACCGTATTGGACAGACA 3513
Query 3640 CGACCAGTAAAGGTGGTGCGCTTCACAGTAAAAGATACAGTTGAAGATCGCATATTGGCC 3699
||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 3514 CGACCAGTAAAAGTGGTGCGGTTCACAGTAAAAGATACAGTTGAAGATCGCATATTGGCC 3573
Query 3700 CTCCAGCAAAAGAAGAGAAAGATGGTGGCTTCTGCATTCGGAGAACATGAAAACGGTAGT 3759
|||||||||| | |||||| ||||||||||||||||||||||||||||||||| ||||||
Sbjct 3574 CTCCAGCAAAGGGAGAGAATGATGGTGGCTTCTGCATTCGGAGAACATGAAAAGGGTAGT 3633
Query 3760 CGAGAATCGCATCTCTCTGTGGAGGATTTGAATTATCTGTTCATGGCATGAGAGCTCGAT 3819
|||||||| ||||||||||||||||||||||| ||||||||||||||||||||| |||||
Sbjct 3634 CGAGAATCACATCTCTCTGTGGAGGATTTGAACTATCTGTTCATGGCATGAGAGGTCGAT 3693
Query 3820 CCAATTGAA-GCTCTTCTGACAAACTCAGGTACATATATATAGGATTTTCCGGGTTTGTG 3878
||||| ||| ||| |||||||||||||||||||||||||| |||||| |||||||||||
Sbjct 3694 CCAATCGAAAGCTTTTCTGACAAACTCAGGTACATATATA--GGATTT-CCGGGTTTGTG 3750
Query 3879 CAGTTTATTAGCAGAAGAAATCTTTTGAACCAAT-ACAAGTT-TATGCAAAGAAGGAACT 3936
||||| | |||||||||||||||| |||| ||| ||| ||| | ||||||||||||| |
Sbjct 3751 CAGTTCAACAGCAGAAGAAATCTTTGGAACTAATTACA-GTTATGTGCAAAGAAGGAAGT 3809
Query 3937 AGAAAAAGATTAGCTTTGCTCTGTGTATATAGAATGAAACTGAATATTATCAAGAAAAAC 3996
||||||||||||||||||| ||||||||||||||||||| |||| ||||||||||||||
Sbjct 3810 AGAAAAAGATTAGCTTTGCCCTGTGTATATAGAATGAAATTGAACATTATCAAGAAAAAT 3869
Query 3997 CTGCAAGAACAATGTGTACATCAATTTCTAGTCACTTAATCCAAACATTTTTCCATG 4053
||||||||||||||||||||||||||||||||||||||||||||| | | |||||||
Sbjct 3870 CTGCAAGAACAATGTGTACATCAATTTCTAGTCACTTAATCCAAATACTGTTCCATG 3926
> Ahg475211 jgi|Araly1|475211|fgenesh2_kg.2__341__AT1G61140.1
Length=4353
Score = 804 bits (435), Expect = 0.0
Identities = 812/987 (82%), Gaps = 54/987 (5%)
Strand=Plus/Plus
Query 1818 TGATCACTCTCAAGTGGTTTTCAATGAAAACAAAGTT-GTCGAAGATAGTTTATG-CAAG 1875
||| ||||||||| || ||| |||||||||||||||| |||| ||||||| | | |||
Sbjct 2123 TGAACACTCTCAATTGCTTTCCAATGAAAACAAAGTTGGTCG-AGATAGTGTGGGTAAAG 2181
Query 1876 ATGAGGGGAAGGCCAGCTGCCGGAACTCTTATTGTCTGTCCCACTAGT-TTGATGAGACA 1934
||||||||||||||||||| ||||| ||| ||||||||||||||||| || ||| | ||
Sbjct 2182 -TGAGGGGAAGGCCAGCTGCTGGAACGCTTGTTGTCTGTCCCACTAGTGTT-ATGCGGCA 2239
Query 1935 ATGGGCTGATGAATTACGCAAGAAGGTTACTCTTGAAGC-ACATCTCTCTGTGCTGGTAT 1993
|||||||||||||||| |||||||| ||| |||||| | |||||||||| |||||||
Sbjct 2240 GTGGGCTGATGAATTACATAAGAAGGTGACTAGTGAAGCGA-ATCTCTCTGTTCTGGTAT 2298
Query 1994 ACCACGGTTGC-AGCAGAACAAAGGATCCTCACGAGCTAGCTAAATATGATGTCGTCATT 2052
|||| || | | || ||||||||||||||| | ||| | |||||||||||||| || ||
Sbjct 2299 ACCATGGGT-CTAGTAGAACAAAGGATCCTTATGAGTTGGCTAAATATGATGTTGTTGTT 2357
Query 2053 ACCACATATTCCCTTGTGAGCGTGGAAGTTCCAAAACAGCCTC--G-TGATAGA-GCTGA 2108
||||||| ||| |||| || ||||||||||||| ||||||| | |||| || | ||
Sbjct 2358 ACCACATTTTCTATTGTAAGTATGGAAGTTCCAAAGCAGCCTCTTGTTGAT-GATGAGGA 2416
Query 2109 TGAGGAGAAGGGTGGCATACATGATGGTGGAGTTGAATCTGTTGG-TTTTGGCTCAAACA 2167
|| ||||||| ||| |||| ||||||||| || | || ||| |||| |||||||||
Sbjct 2417 CGAAGAGAAGGATGGTGTACAGGATGGTGGAACTGCAGCTACTGGCTTTT-GCTCAAACA 2475
Query 2168 A-AAAA-G--ATCT-C-CCAAATTCTCAAAAGAAGGGCACAAAGAAGAGGAAACATATGG 2221
| |||| | || | | || ||||| |||||| |||| ||||||||| |||||
Sbjct 2476 AGAAAAGGAAATATCCTCCGGATTCTAAAAAGAGGGGCTCAAAGAAGAAGAAAC------ 2529
Query 2222 ATTGTGAACCTGTTGAGTTTCTGTCTGGCCCTCTCGCGCAAGTTTCATGGTTTAGAGTTG 2281
|| ||||||||||||||||||||||| ||| |||||||||||||||||||||
Sbjct 2530 ------AA---GTTGAGTTTCTGTCTGGCCCTCTTGCGAAAGTTTCATGGTTTAGAGTTG 2580
Query 2282 TTCTAGATGAAGCTCAGAGCATTAAGAATTACAAAACCCAAGCTT-CAATAGCATGTTCA 2340
|||||||||| || |||||||||||||||||||||||||||| || ||| |||||| |
Sbjct 2581 TTCTAGATGAGGCACAGAGCATTAAGAATTACAAAACCCAAG-TTGCAAGAGCATGCTGG 2639
Query 2341 GGCCTTCATGCTAAGCGTAGGTGGTGTTTGTCTGGCACTCCTATCCAGAATTCAATTGCT 2400
||||||| |||||| || ||||||||||||||||||||||| |||||||||||||| | |
Sbjct 2640 GGCCTTCGTGCTAAACGGAGGTGGTGTTTGTCTGGCACTCCAATCCAGAATTCAATCGAT 2699
Query 2401 GACCTCTACAGCTACTT-CAGATTTCTTAAGTATGATCCTTATTCTAGCTACCAAACGTT 2459
||||||||||||||||| | |||| || || ||||||||||||||| |||| | |||
Sbjct 2700 GACCTCTACAGCTACTTTC-GATTCCTCAAATATGATCCTTATTCTTCCTACGTATTGTT 2758
Query 2460 TTGT-GAAACGATTAAGAACCCCATCAGTAGCTACCCGGGGGAAGGATATAA-AACGTTG 2517
||| | | ||||||||||||| || | ||| |||||| | |||||||| | || ||||
Sbjct 2759 CTGTAGCA-CGATTAAGAACCCTATAACTAGGAACCCGGTGAAAGGATATCAGAA-GTTG 2816
Query 2518 CAGGCTATCCTGAAAAAAGTAATGCTTAGACGAACTAAAGATACACTTCTCGATGGAAAA 2577
||||||||||| |||| ||| |||||| | |||||||||| | || |||| ||||| |||
Sbjct 2817 CAGGCTATCCTTAAAACAGTGATGCTTCGCCGAACTAAAGGTTCATTTCTTGATGGGAAA 2876
Query 2578 CCCGTGATCTCTTTACCTCCGAAGTCCATCGAGTTGAGGAGAGTGGACTTT-ACCAAGGA 2636
||| | ||||||||||||||||||||||| ||| |||| | |||||| ||| || |||
Sbjct 2877 CCCATAATCTCTTTACCTCCGAAGTCCATTGAGCTGAGAAAAGTGGA-TTTCACTGTGGA 2935
Query 2637 AGAACGTGATTTCTACTCAAAACTAGAGTGC-GACTCTCGTGAC-CAATTCAAGGAATAT 2694
||||||||||||||||| ||||||||| || || |||||| || ||||||| |||||||
Sbjct 2936 GGAACGTGATTTCTACTCCAAACTAGAG-GCTGAATCTCGT-ACTCAATTCAGGGAATAT 2993
Query 2695 GCAGAAGCTGGAACGGTGAAGCAAAATTATGTAAATATTTTGTTGATGCTGCT-GCGTCT 2753
|||||||| ||||| ||||||||||||||||||||||| ||||||||||| || ||| ||
Sbjct 2994 GCAGAAGCCGGAACAGTGAAGCAAAATTATGTAAATATCTTGTTGATGCT-CTTGCGCCT 3052
Query 2754 TCGTCAAGCTTGTGGCCACCCTCTTCT 2780
||| |||||||||| |||||||||||
Sbjct 3053 TCGCCAAGCTTGTGATCACCCTCTTCT 3079
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 153942882785
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5