BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT1G11110.1 Length=1297 Score E Sequences producing significant alignments: (Bits) Value Ahg910857 jgi|Araly1|910857|Al_scaffold_0001_1111 1122 0.0 > Ahg910857 jgi|Araly1|910857|Al_scaffold_0001_1111 Length=837 Score = 1122 bits (607), Expect = 0.0 Identities = 769/845 (91%), Gaps = 19/845 (2%) Strand=Plus/Plus Query 69 ATGGCAGATAACG-AAGGGAATCTGAATGAAGTGAACCAAGTAGACGAAGAAAATCAGTA 127 ||||||||| ||| || | || |||||| |||| | |||||||||| ||||||||| Sbjct 1 ATGGCAGATTACGAAATAG-ATGTGAATGTAGTGGAGGAAGTAGACGACTTAAATCAGTA 59 Query 128 TATAGTGGAGGAA-GCGGACGAAGAAAATCAGGTGGAAGCAGAGAACGAAGAAGCTCAGA 186 ||||||||| ||| | || |||||||||||||||||||||||||||||||||| |||||| Sbjct 60 TATAGTGGACGAAGGTGG-CGAAGAAAATCAGGTGGAAGCAGAGAACGAAGAAACTCAGA 118 Query 187 TATCAGAGAACGAAGAATTTGTGATTCAGGAA-CAACCGAAGAAACTGATCATGAGTGAT 245 | ||||||||||||||| ||||||||| |||| ||| |||||||| |||||||||||||| Sbjct 119 TTTCAGAGAACGAAGAAATTGTGATTCTGGAACCAA-CGAAGAAATTGATCATGAGTGAT 177 Query 246 GTTTGGGAGCAGTATCTGACAACTGCGGAAATTCGGAAAGAAGACATGAACAGGCTCGTG 305 ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| Sbjct 178 GTTTGGGAGCAGTATCTGAGAACTGCGGAAATTCGGAAAGAAGACATGAACAGGCTCGTG 237 Query 306 ATGAACTTTCTTGTGGTTGAAGGATATCTAGAAGCTGTGGAGAAATTTCAAAAGGAATCT 365 ||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||| Sbjct 238 ATGAATTTTCTTGTGGTTGAAGGATATCTAGAAGCTGTGGAGAAATTCCAAAAGGAATCT 297 Query 366 GGAACTAAG-C--AAGTAGGTGTTGCGAGCATCAGTGACAGATTGGCTGTTAAAAG-GGA 421 ||||||||| | |||||||| ||||||||||||||||| |||| |||||| | || || Sbjct 298 GGAACTAAGCCAGAAGTAGGTTTTGCGAGCATCAGTGACCGATTAGCTGTT-ATAGAGGC 356 Query 422 TATCGAAAGCGGAGATCTTGAGGATGCTGTTGAGAAGTTGAATGCTATAAATCCTGAGAT 481 ||||||||||||| ||||||| ||||||||||||||||||||||||| ||| |||||||| Sbjct 357 TATCGAAAGCGGAAATCTTGACGATGCTGTTGAGAAGTTGAATGCTACAAACCCTGAGAT 416 Query 482 ACTGAAGACGAATTTTTCTCTTAATCAGCAGAGGTTCATAGAACGAATCCGCATAGGGG- 540 ||||||||||||||||| |||||||||||| ||||| |||||| |||||||||| |||| Sbjct 417 ACTGAAGACGAATTTTTTTCTTAATCAGCAAAGGTTTATAGAAAGAATCCGCAT-GGGGA 475 Query 541 TGACA-ATTAAGGAGACCTTTA-ATTTTGCTGAGAAAGAGCTTAAACCATTGGTAGAACA 598 ||||| | | ||||| || ||| | |||||| |||||||||||||||||||||||||||| Sbjct 476 TGACAGA-TGAGGAGGCC-TTAGAGTTTGCTCAGAAAGAGCTTAAACCATTGGTAGAACA 533 Query 599 GAACCTGGCGTTTCTGGAAGAATTGGAAAAAACTATGGCTATACTCCGTTTTAGAGATCT 658 ||||||||||||||| |||||| ||| ||| ||||||| ||||||||||| || |||||| Sbjct 534 GAACCTGGCGTTTCTAGAAGAAATGGCAAAGACTATGGATATACTCCGTTGTAAAGATCT 593 Query 659 CCCTGACATCCCGGAGGCAG-AGAGAGAGCTTCTTGACAACTCACGGTGGTTTAAGACAG 717 |||| |||||||||||| | || |||||||||||| ||||||||||||||||||||||| Sbjct 594 CCCTAACATCCCGGAGGTGGTAG-GAGAGCTTCTTGCCAACTCACGGTGGTTTAAGACAG 652 Query 718 CTGCCGAAGTAAATGCAGCGATTCTTACTAGCCAGACTGGTCTAAAATGTCCCAAACTTC 777 ||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||| Sbjct 653 CTGCCGAAGTAAATGCAGCCATTCTTACTAGCCAGACTGGTTTAAAATGTCCCAAACTTC 712 Query 778 TAGACTTGTTGAAGATGTTGACTTGGACTCAGAACCAACTGGATGAAAAAGTAGAGTACC 837 || |||||||||||||| ||| |||||||||||| ||||||||||||||||||||||| | Sbjct 713 TACACTTGTTGAAGATGCTGATTTGGACTCAGAATCAACTGGATGAAAAAGTAGAGTATC 772 Query 838 CACGCATGAGTGTTTTGCCCACTGGCCAGCTCACAGTCATAAACCCGCCATGGCCATCAG 897 |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| Sbjct 773 CACGCATGAGTGTTTTGCCCACTGGCCAGCTCACAGTCATAAACCCACCATGGCCATCAG 832 Query 898 AATGA 902 ||||| Sbjct 833 AATGA 837 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 48492350424 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5