BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G11110.1
Length=1297
Score E
Sequences producing significant alignments: (Bits) Value
Ahg910857 jgi|Araly1|910857|Al_scaffold_0001_1111 1122 0.0
> Ahg910857 jgi|Araly1|910857|Al_scaffold_0001_1111
Length=837
Score = 1122 bits (607), Expect = 0.0
Identities = 769/845 (91%), Gaps = 19/845 (2%)
Strand=Plus/Plus
Query 69 ATGGCAGATAACG-AAGGGAATCTGAATGAAGTGAACCAAGTAGACGAAGAAAATCAGTA 127
||||||||| ||| || | || |||||| |||| | |||||||||| |||||||||
Sbjct 1 ATGGCAGATTACGAAATAG-ATGTGAATGTAGTGGAGGAAGTAGACGACTTAAATCAGTA 59
Query 128 TATAGTGGAGGAA-GCGGACGAAGAAAATCAGGTGGAAGCAGAGAACGAAGAAGCTCAGA 186
||||||||| ||| | || |||||||||||||||||||||||||||||||||| ||||||
Sbjct 60 TATAGTGGACGAAGGTGG-CGAAGAAAATCAGGTGGAAGCAGAGAACGAAGAAACTCAGA 118
Query 187 TATCAGAGAACGAAGAATTTGTGATTCAGGAA-CAACCGAAGAAACTGATCATGAGTGAT 245
| ||||||||||||||| ||||||||| |||| ||| |||||||| ||||||||||||||
Sbjct 119 TTTCAGAGAACGAAGAAATTGTGATTCTGGAACCAA-CGAAGAAATTGATCATGAGTGAT 177
Query 246 GTTTGGGAGCAGTATCTGACAACTGCGGAAATTCGGAAAGAAGACATGAACAGGCTCGTG 305
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 178 GTTTGGGAGCAGTATCTGAGAACTGCGGAAATTCGGAAAGAAGACATGAACAGGCTCGTG 237
Query 306 ATGAACTTTCTTGTGGTTGAAGGATATCTAGAAGCTGTGGAGAAATTTCAAAAGGAATCT 365
||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 238 ATGAATTTTCTTGTGGTTGAAGGATATCTAGAAGCTGTGGAGAAATTCCAAAAGGAATCT 297
Query 366 GGAACTAAG-C--AAGTAGGTGTTGCGAGCATCAGTGACAGATTGGCTGTTAAAAG-GGA 421
||||||||| | |||||||| ||||||||||||||||| |||| |||||| | || ||
Sbjct 298 GGAACTAAGCCAGAAGTAGGTTTTGCGAGCATCAGTGACCGATTAGCTGTT-ATAGAGGC 356
Query 422 TATCGAAAGCGGAGATCTTGAGGATGCTGTTGAGAAGTTGAATGCTATAAATCCTGAGAT 481
||||||||||||| ||||||| ||||||||||||||||||||||||| ||| ||||||||
Sbjct 357 TATCGAAAGCGGAAATCTTGACGATGCTGTTGAGAAGTTGAATGCTACAAACCCTGAGAT 416
Query 482 ACTGAAGACGAATTTTTCTCTTAATCAGCAGAGGTTCATAGAACGAATCCGCATAGGGG- 540
||||||||||||||||| |||||||||||| ||||| |||||| |||||||||| ||||
Sbjct 417 ACTGAAGACGAATTTTTTTCTTAATCAGCAAAGGTTTATAGAAAGAATCCGCAT-GGGGA 475
Query 541 TGACA-ATTAAGGAGACCTTTA-ATTTTGCTGAGAAAGAGCTTAAACCATTGGTAGAACA 598
||||| | | ||||| || ||| | |||||| ||||||||||||||||||||||||||||
Sbjct 476 TGACAGA-TGAGGAGGCC-TTAGAGTTTGCTCAGAAAGAGCTTAAACCATTGGTAGAACA 533
Query 599 GAACCTGGCGTTTCTGGAAGAATTGGAAAAAACTATGGCTATACTCCGTTTTAGAGATCT 658
||||||||||||||| |||||| ||| ||| ||||||| ||||||||||| || ||||||
Sbjct 534 GAACCTGGCGTTTCTAGAAGAAATGGCAAAGACTATGGATATACTCCGTTGTAAAGATCT 593
Query 659 CCCTGACATCCCGGAGGCAG-AGAGAGAGCTTCTTGACAACTCACGGTGGTTTAAGACAG 717
|||| |||||||||||| | || |||||||||||| |||||||||||||||||||||||
Sbjct 594 CCCTAACATCCCGGAGGTGGTAG-GAGAGCTTCTTGCCAACTCACGGTGGTTTAAGACAG 652
Query 718 CTGCCGAAGTAAATGCAGCGATTCTTACTAGCCAGACTGGTCTAAAATGTCCCAAACTTC 777
||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||
Sbjct 653 CTGCCGAAGTAAATGCAGCCATTCTTACTAGCCAGACTGGTTTAAAATGTCCCAAACTTC 712
Query 778 TAGACTTGTTGAAGATGTTGACTTGGACTCAGAACCAACTGGATGAAAAAGTAGAGTACC 837
|| |||||||||||||| ||| |||||||||||| ||||||||||||||||||||||| |
Sbjct 713 TACACTTGTTGAAGATGCTGATTTGGACTCAGAATCAACTGGATGAAAAAGTAGAGTATC 772
Query 838 CACGCATGAGTGTTTTGCCCACTGGCCAGCTCACAGTCATAAACCCGCCATGGCCATCAG 897
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 773 CACGCATGAGTGTTTTGCCCACTGGCCAGCTCACAGTCATAAACCCACCATGGCCATCAG 832
Query 898 AATGA 902
|||||
Sbjct 833 AATGA 837
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 48492350424
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5