BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G11112.1
Length=737
Score E
Sequences producing significant alignments: (Bits) Value
Ahg471246 jgi|Araly1|471246|fgenesh2_kg.1__1200__AT1G11112.1 1042 0.0
> Ahg471246 jgi|Araly1|471246|fgenesh2_kg.1__1200__AT1G11112.1
Length=715
Score = 1042 bits (564), Expect = 0.0
Identities = 674/722 (93%), Gaps = 28/722 (4%)
Strand=Plus/Plus
Query 15 aaaaaGAAACAGAGTATCCGAAAATGATGTTTTAGGCACTCTGCCCAAAGTTTCTTCTTC 74
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 AAAAAGAAACAGAGTATCCGAAAATGATGTTTTAGGCACTCTGCCCAAAGTTTCTTCTTC 60
Query 75 TTCCTCTTCCTCTGTTATATCTCTTTCTCGTGACCCCCTATGTAAATTCCTCACACGAAT 134
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 61 TTCCTCTTCCTCTGTTATATCTCTTTCTCGTGACCCCCAATGTAAATTCCTCACACGAAT 120
Query 135 TCAACTCCCATTTTTAAAAAAGCTGCTAACTTTTTCCTTCATTCCTCCTCCTCTCTTTCT 194
|||||||||||||| | ||| ||||||||||||||| |||||||||||||||||||| ||
Sbjct 121 TCAACTCCCATTTT-ATAAA-GCTGCTAACTTTTTC-TTCATTCCTCCTCCTCTCTT-CT 176
Query 195 TCTGCTCCAAAAAGATCAAAACTTTCATCCATTTTCAAAAGACCCTTTTACGCTTAATTC 254
|||||||||||||||||||||||||| ||||||||||||||||||||| |||||||| ||
Sbjct 177 TCTGCTCCAAAAAGATCAAAACTTTCTTCCATTTTCAAAAGACCCTTTGACGCTTAAATC 236
Query 255 CAGAAACTGAATTTTCTGAGTAAAAATGAGATTAGAGGATAGATTCGAGGCGGTGAATCA 314
||||| ||| |||||||||||||| || |||||||||||||||||||||||||||||||
Sbjct 237 AAGAAATTGAGTTTTCTGAGTAAAA-TGGGATTAGAGGATAGATTCGAGGCGGTGAATCA 295
Query 315 GTACCGGAAAAAGATGTTCCGGA-GGATGAAGGCTGCGGTgaagaagacgaagaagaaga 373
||||||||||||||||||| ||| || |||||||||||||||||||||||||||||||||
Sbjct 296 GTACCGGAAAAAGATGTTCAGGAAGG-TGAAGGCTGCGGTGAAGAAGACGAAGAAGAAGA 354
Query 374 agCAAACTATGTTTCAGTATGATCCTTGGAGTTATGCTTTAAACTTCGACGACGGAG--T 431
|||||||||||||||||||||||||||||||||| ||| |||| ||||||||||||| |
Sbjct 355 AGCAAACTATGTTTCAGTATGATCCTTGGAGTTACGCTCTAAATTTCGACGACGGAGGAT 414
Query 432 -AGAGAATCCTCAGAGATTCTCCGGCGACTGTAACTGTAAACTCCACAGAATCACTTTGA 490
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 415 TAGAGAATCCTCAGAGATTCTCCGGCGACTGTAACTGTAAACTCCACAAAATCACTTTGA 474
Query 491 TTTATGTTGTTTCTGTCAAATTTTGACCATGTCAAAtctctttctttctcttatttcttt 550
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 475 TTTATGTTGTTTCTGTCAAATTTTGACCATGTCAAATCTCTTTCTTTCTCTTATTTGTTT 534
Query 551 acagtcacacttgtttcagtttctctc--tctctct---tctt-tGTGT-T-ATTTACCA 602
||||||||||||||||||||||||||| ||||||| |||| | ||| | |||| |||
Sbjct 535 ACAGTCACACTTGTTTCAGTTTCTCTCCCTCTCTCTCCCTCTTCTTTGTGTCATTTTCCA 594
Query 603 TCAAATTTGTTGTTTCTTTTAGAGATTTATTCGTCAAAACTTGAATCTTTTGTTTCAATG 662
|||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||
Sbjct 595 TCAAATTTGTTGTTTCTTTTAGAGATTTTTTCGTCAAAACTTGAATCTTCTGTTTCAATG 654
Query 663 TACTTCAAATGGTTG------T-AA-GCAATTATCTCGACAAGTCA-TCGATCATTCTAA 713
||||||||||||||| | || |||||||||| ||||||||| | |||||||||||
Sbjct 655 TACTTCAAATGGTTGAAAGAATGAAAGCAATTATCTTGACAAGTCAAT-GATCATTCTAA 713
Query 714 TT 715
||
Sbjct 714 TT 715
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 27143516904
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5