BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G11125.1
Length=929
Score E
Sequences producing significant alignments: (Bits) Value
Ahg471247 jgi|Araly1|471247|fgenesh2_kg.1__1201__AT1G11120.1 1206 0.0
Ahg475202 jgi|Araly1|475202|fgenesh2_kg.2__332__AT1G61170.1 178 7e-44
> Ahg471247 jgi|Araly1|471247|fgenesh2_kg.1__1201__AT1G11120.1
Length=1141
Score = 1206 bits (653), Expect = 0.0
Identities = 766/821 (93%), Gaps = 6/821 (1%)
Strand=Plus/Plus
Query 81 CTCCGCCACCGCCGACAAGAAAGATGATCCTGTCTCCGGCAAGAACACCGCACGGCCTCC 140
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 324 CTCCGCCACCGCCGACAAGAAAGATGATCCTGTCTCCGGCAAGAACACCGCACCACCTCC 383
Query 141 ATCTGTTATCGATGAAGAGACAGTAGTCAAAGAAGTCTTGTCCGAAACCACATTGCTCAC 200
||| ||| |||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 384 ATCAGTTGTCGATGAAGAGACAGTAGTCAAAGAAGTCTTGTCCGAAACTACATTGCTCAC 443
Query 201 TTCCTCTAACGACAATTCGACGGTGGAGAAGACT-ACGTTGACAAAGATTCAAGAAGAAG 259
||||||||||||||||||||||||||| |||| | ||| |||||||||||||||||| |
Sbjct 444 TTCCTCTAACGACAATTCGACGGTGGATAAGA-TGACGACGACAAAGATTCAAGAAGATG 502
Query 260 AGGAGAAGAAACCCGGGATTGTTGTCGACGTTGCTCAAGAACCGGTTTTGACCAAGCCCA 319
|||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||
Sbjct 503 AGGAGAAGAAACCCGGAATTGTTGTCGACGTAGCTCAAGAACCGGTTTTGACCAAGCCCG 562
Query 320 GTTTGGTTGAACCGGAAAAAGGATCGGAGGTTTCGGAGAATTGTAGTTTAAGCGAGAGTT 379
|| | ||||||| ||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 563 GTACGATTGAACCCGAAAAAGGATCGGAGGTTTCGGAGATTTGTAGTTTAAGCGAGAGTT 622
Query 380 TGCTTTCGATCGTGAATAAG-TACGACGAGGAAGAAGTG-AAGCAGATGAAATCTCATGT 437
||||||||||||||||| | |||||||||| ||||||| || |||||||||||||| ||
Sbjct 623 TGCTTTCGATCGTGAAT-GGATACGACGAGGGAGAAGTGCAA-CAGATGAAATCTCAGGT 680
Query 438 AGTGAGACAGAGATCTCCGGCGAAATCTCGGAACCGGGTCATGGTTAGTTATCCAAACCG 497
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 681 AGTGAGACAGAGATCTCCGGCGAAATCTCGGAACCGGGTCATGGTTAGTTATCCAAACCG 740
Query 498 GAGAACCGATATGTCTCCACGTAAGAGAAACAACGAAGAAGAAGCTGGCTCGGTGAGGCT 557
|||||||||||||||||| ||||||||| || ||||||||||||||||||||| |||||
Sbjct 741 GAGAACCGATATGTCTCCTCGTAAGAGACACTCCGAAGAAGAAGCTGGCTCGGTAAGGCT 800
Query 558 GGTTCCGTCGGCTACGGGTACGAGAGACTCGACTGAAAGATCCGAGAGAAGGTCTAGATC 617
||||||| ||| |||||||| ||||||| ||||||||||||||||||||||||| || ||
Sbjct 801 GGTTCCGCCGGGTACGGGTAAGAGAGACCCGACTGAAAGATCCGAGAGAAGGTCAAGGTC 860
Query 618 GCCGGCGATGAACAGGTCCGTCATGATGGGCCCAACTCGGAGTCAACAGAGTACAGACAG 677
|||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||
Sbjct 861 GCCGGCGATGAACAGGTCCGTCATGATGGGCCCAACTCGGAGTCAACAAAGTACGGACAG 920
Query 678 TTGTGGAGCAATGAGGAGACAAAGCCAGTCTCCGGGTCGGGTCAGACTCAATCCGAATAT 737
||||||||||||||||||||||| ||||||||||||||||||||||| ||||||| |
Sbjct 921 TTGTGGAGCAATGAGGAGACAAAATCAGTCTCCGGGTCGGGTCAGACTTGATCCGAAGAA 980
Query 738 GAACGGGTCGGATCAAGAGTGTAATCATCACAAGTGGCCGGGTTCTATTGGAAATTACAA 797
|||||||||||| ||||| |||||||||||| |||||||||||||| | || ||||||||
Sbjct 981 GAACGGGTCGGAACAAGATTGTAATCATCACCAGTGGCCGGGTTCTGTCGGGAATTACAA 1040
Query 798 TTCTGCCCCTAACGACTCGTTTGAGAACCCTCTTGTTTCATTAGAGTGTTTCATCTTCCT 857
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1041 TTCTACCCCTAACGACTCGTTTGAGAACCCTCTTGTTTCATTAGAGTGTTTCATCTTTCT 1100
Query 858 ATGAGATAATGTATCTTATTACCGAATTATCGCCGGAATTT 898
||||||||||||||||||||| |||||| ||||||||||||
Sbjct 1101 ATGAGATAATGTATCTTATTATCGAATTGTCGCCGGAATTT 1141
> Ahg475202 jgi|Araly1|475202|fgenesh2_kg.2__332__AT1G61170.1
Length=1000
Score = 178 bits (96), Expect = 7e-44
Identities = 317/415 (76%), Gaps = 50/415 (12%)
Strand=Plus/Plus
Query 149 TCGATGAAGAGACAGTAGTCAAAGAAGTCTTGTCCGAAACCACATTGCTCACT--T-CCT 205
|||| ||||||||||||||||||||||||||||| || || || ||| ||||| | |||
Sbjct 165 TCGAAGAAGAGACAGTAGTCAAAGAAGTCTTGTCTGAGACAACCTTGTTCACTCCTTCCT 224
Query 206 CTAA---CGACAATTCGACGGTGGAGAAGACTACGTTGAC-AA-A-GATTCAAGAAGAAG 259
||| | ||| ||||||| | | |||| | || ||| || | ||| | ||||||||
Sbjct 225 CTAGTTTCCACACTTCGACGATC-A-AAGA-TCCGGTGAAGAAGAAGATCCGAGAAGAAG 281
Query 260 AGGAGAAGAAACCCGGGATTGTTGTCGACGTTGCT-CAAGAACCGGTTTTGAC-CAAGCC 317
|||||||||||||||| || ||| | | ||| || || |||||| ||| | | ||
Sbjct 282 AGGAGAAGAAACCCGGT-TTCTTGAAAATG--GCTTCA-GACCCGGTTATGATTCGA-CC 336
Query 318 CAGTTTGGTTGAACCGGAAAAAGGATCGGAGGTTTCGGAGAATTGTAGTTT-A-----AG 371
| ||| |||||| || ||| ||||||||||||||||||||| |||||| || | ||
Sbjct 337 CGGTTCGGTTGATCCTGAAGAAGGATCGGAGGTTTCGGAGATTTGTAGCTTGAGTTTGAG 396
Query 372 CGAGAGTTTG-CTTT--CGATCGTGAAT-AA-G-T-ACGACGAGGAAGAAGTGAAGCAGA 424
||||||| || ||| || | |||| | || | | |||| |||||||| |||| | |
Sbjct 397 CGAGAGTGTGTCTTCAACGGTTGTGA-TGAATGGTTACGATGAGGAAGATGTGATG-A-- 452
Query 425 TGAAATCTCATGTAGTGAGA-C--AGAGATCTCCGGCGAAATCTCGGAACCGGGTCA-TG 480
||||| | | | || || | | ||||||||||||||||| |||||| |||||||| ||
Sbjct 453 TGAAA-C--A-G-AG-GAAATCTCAGAGATCTCCGGCGAAAGCTCGGACCCGGGTCACTG 506
Query 481 GT--TAGTTATCCAAACCGGAGAACCGAT-ATGTCTCCACGTAAGAGAAACAACG 532
|| || |||||| | ||||||||| ||| | ||||||||||||||||||||||
Sbjct 507 GTAATAATTATCCGACCCGGAGAACTGATCAA-TCTCCACGTAAGAGAAACAACG 560
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 34463116968
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5