BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT1G11125.1 Length=929 Score E Sequences producing significant alignments: (Bits) Value Ahg471247 jgi|Araly1|471247|fgenesh2_kg.1__1201__AT1G11120.1 1206 0.0 Ahg475202 jgi|Araly1|475202|fgenesh2_kg.2__332__AT1G61170.1 178 7e-44 > Ahg471247 jgi|Araly1|471247|fgenesh2_kg.1__1201__AT1G11120.1 Length=1141 Score = 1206 bits (653), Expect = 0.0 Identities = 766/821 (93%), Gaps = 6/821 (1%) Strand=Plus/Plus Query 81 CTCCGCCACCGCCGACAAGAAAGATGATCCTGTCTCCGGCAAGAACACCGCACGGCCTCC 140 ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| Sbjct 324 CTCCGCCACCGCCGACAAGAAAGATGATCCTGTCTCCGGCAAGAACACCGCACCACCTCC 383 Query 141 ATCTGTTATCGATGAAGAGACAGTAGTCAAAGAAGTCTTGTCCGAAACCACATTGCTCAC 200 ||| ||| |||||||||||||||||||||||||||||||||||||||| ||||||||||| Sbjct 384 ATCAGTTGTCGATGAAGAGACAGTAGTCAAAGAAGTCTTGTCCGAAACTACATTGCTCAC 443 Query 201 TTCCTCTAACGACAATTCGACGGTGGAGAAGACT-ACGTTGACAAAGATTCAAGAAGAAG 259 ||||||||||||||||||||||||||| |||| | ||| |||||||||||||||||| | Sbjct 444 TTCCTCTAACGACAATTCGACGGTGGATAAGA-TGACGACGACAAAGATTCAAGAAGATG 502 Query 260 AGGAGAAGAAACCCGGGATTGTTGTCGACGTTGCTCAAGAACCGGTTTTGACCAAGCCCA 319 |||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||| Sbjct 503 AGGAGAAGAAACCCGGAATTGTTGTCGACGTAGCTCAAGAACCGGTTTTGACCAAGCCCG 562 Query 320 GTTTGGTTGAACCGGAAAAAGGATCGGAGGTTTCGGAGAATTGTAGTTTAAGCGAGAGTT 379 || | ||||||| ||||||||||||||||||||||||| |||||||||||||||||||| Sbjct 563 GTACGATTGAACCCGAAAAAGGATCGGAGGTTTCGGAGATTTGTAGTTTAAGCGAGAGTT 622 Query 380 TGCTTTCGATCGTGAATAAG-TACGACGAGGAAGAAGTG-AAGCAGATGAAATCTCATGT 437 ||||||||||||||||| | |||||||||| ||||||| || |||||||||||||| || Sbjct 623 TGCTTTCGATCGTGAAT-GGATACGACGAGGGAGAAGTGCAA-CAGATGAAATCTCAGGT 680 Query 438 AGTGAGACAGAGATCTCCGGCGAAATCTCGGAACCGGGTCATGGTTAGTTATCCAAACCG 497 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 681 AGTGAGACAGAGATCTCCGGCGAAATCTCGGAACCGGGTCATGGTTAGTTATCCAAACCG 740 Query 498 GAGAACCGATATGTCTCCACGTAAGAGAAACAACGAAGAAGAAGCTGGCTCGGTGAGGCT 557 |||||||||||||||||| ||||||||| || ||||||||||||||||||||| ||||| Sbjct 741 GAGAACCGATATGTCTCCTCGTAAGAGACACTCCGAAGAAGAAGCTGGCTCGGTAAGGCT 800 Query 558 GGTTCCGTCGGCTACGGGTACGAGAGACTCGACTGAAAGATCCGAGAGAAGGTCTAGATC 617 ||||||| ||| |||||||| ||||||| ||||||||||||||||||||||||| || || Sbjct 801 GGTTCCGCCGGGTACGGGTAAGAGAGACCCGACTGAAAGATCCGAGAGAAGGTCAAGGTC 860 Query 618 GCCGGCGATGAACAGGTCCGTCATGATGGGCCCAACTCGGAGTCAACAGAGTACAGACAG 677 |||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||| Sbjct 861 GCCGGCGATGAACAGGTCCGTCATGATGGGCCCAACTCGGAGTCAACAAAGTACGGACAG 920 Query 678 TTGTGGAGCAATGAGGAGACAAAGCCAGTCTCCGGGTCGGGTCAGACTCAATCCGAATAT 737 ||||||||||||||||||||||| ||||||||||||||||||||||| ||||||| | Sbjct 921 TTGTGGAGCAATGAGGAGACAAAATCAGTCTCCGGGTCGGGTCAGACTTGATCCGAAGAA 980 Query 738 GAACGGGTCGGATCAAGAGTGTAATCATCACAAGTGGCCGGGTTCTATTGGAAATTACAA 797 |||||||||||| ||||| |||||||||||| |||||||||||||| | || |||||||| Sbjct 981 GAACGGGTCGGAACAAGATTGTAATCATCACCAGTGGCCGGGTTCTGTCGGGAATTACAA 1040 Query 798 TTCTGCCCCTAACGACTCGTTTGAGAACCCTCTTGTTTCATTAGAGTGTTTCATCTTCCT 857 |||| |||||||||||||||||||||||||||||||||||||||||||||||||||| || Sbjct 1041 TTCTACCCCTAACGACTCGTTTGAGAACCCTCTTGTTTCATTAGAGTGTTTCATCTTTCT 1100 Query 858 ATGAGATAATGTATCTTATTACCGAATTATCGCCGGAATTT 898 ||||||||||||||||||||| |||||| |||||||||||| Sbjct 1101 ATGAGATAATGTATCTTATTATCGAATTGTCGCCGGAATTT 1141 > Ahg475202 jgi|Araly1|475202|fgenesh2_kg.2__332__AT1G61170.1 Length=1000 Score = 178 bits (96), Expect = 7e-44 Identities = 317/415 (76%), Gaps = 50/415 (12%) Strand=Plus/Plus Query 149 TCGATGAAGAGACAGTAGTCAAAGAAGTCTTGTCCGAAACCACATTGCTCACT--T-CCT 205 |||| ||||||||||||||||||||||||||||| || || || ||| ||||| | ||| Sbjct 165 TCGAAGAAGAGACAGTAGTCAAAGAAGTCTTGTCTGAGACAACCTTGTTCACTCCTTCCT 224 Query 206 CTAA---CGACAATTCGACGGTGGAGAAGACTACGTTGAC-AA-A-GATTCAAGAAGAAG 259 ||| | ||| ||||||| | | |||| | || ||| || | ||| | |||||||| Sbjct 225 CTAGTTTCCACACTTCGACGATC-A-AAGA-TCCGGTGAAGAAGAAGATCCGAGAAGAAG 281 Query 260 AGGAGAAGAAACCCGGGATTGTTGTCGACGTTGCT-CAAGAACCGGTTTTGAC-CAAGCC 317 |||||||||||||||| || ||| | | ||| || || |||||| ||| | | || Sbjct 282 AGGAGAAGAAACCCGGT-TTCTTGAAAATG--GCTTCA-GACCCGGTTATGATTCGA-CC 336 Query 318 CAGTTTGGTTGAACCGGAAAAAGGATCGGAGGTTTCGGAGAATTGTAGTTT-A-----AG 371 | ||| |||||| || ||| ||||||||||||||||||||| |||||| || | || Sbjct 337 CGGTTCGGTTGATCCTGAAGAAGGATCGGAGGTTTCGGAGATTTGTAGCTTGAGTTTGAG 396 Query 372 CGAGAGTTTG-CTTT--CGATCGTGAAT-AA-G-T-ACGACGAGGAAGAAGTGAAGCAGA 424 ||||||| || ||| || | |||| | || | | |||| |||||||| |||| | | Sbjct 397 CGAGAGTGTGTCTTCAACGGTTGTGA-TGAATGGTTACGATGAGGAAGATGTGATG-A-- 452 Query 425 TGAAATCTCATGTAGTGAGA-C--AGAGATCTCCGGCGAAATCTCGGAACCGGGTCA-TG 480 ||||| | | | || || | | ||||||||||||||||| |||||| |||||||| || Sbjct 453 TGAAA-C--A-G-AG-GAAATCTCAGAGATCTCCGGCGAAAGCTCGGACCCGGGTCACTG 506 Query 481 GT--TAGTTATCCAAACCGGAGAACCGAT-ATGTCTCCACGTAAGAGAAACAACG 532 || || |||||| | ||||||||| ||| | |||||||||||||||||||||| Sbjct 507 GTAATAATTATCCGACCCGGAGAACTGATCAA-TCTCCACGTAAGAGAAACAACG 560 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 34463116968 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5