BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT1G11145.1

Length=489
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg910861 jgi|Araly1|910861|Al_scaffold_0001_1115                    457    4e-128


> Ahg910861 jgi|Araly1|910861|Al_scaffold_0001_1115
Length=1161

 Score =  457 bits (247),  Expect = 4e-128
 Identities = 310/341 (91%), Gaps = 2/341 (1%)
 Strand=Plus/Plus

Query  48    GAAGTCTGTATGGGAAATCACTGGAAGCAATATCGACCTAGTATGCATTGGCAACTTTTG  107
             ||| |||||||||||||| ||||||||||||||||| |||| |||||| |||||||||||
Sbjct  727   GAA-TCTGTATGGGAAATAACTGGAAGCAATATCGAGCTAGGATGCATCGGCAACTTTTG  785

Query  108   TAGAAGCTTGAAGGACTTGAGCTCTAGGGGAGGCACAGATGCATCTACTAACACATGTAT  167
             ||||||||||||| ||||||||||||| ||| |||| |||||||||| ||||||||||||
Sbjct  786   TAGAAGCTTGAAGAACTTGAGCTCTAGCGGAAGCACGGATGCATCTAGTAACACATGTAT  845

Query  168   GCTTCCTTGGCAATATAGTTTGCAGAAACCGTTGCTTGGGGTCAGTTATTTAAACAGTGA  227
             ||||||||||||||||||  |||||||| |||||||||||||||||||| ||||||||||
Sbjct  846   GCTTCCTTGGCAATATAGGCTGCAGAAATCGTTGCTTGGGGTCAGTTATCTAAACAGTGA  905

Query  228   CGGTAGTTCTCAGTCGACACCTCATGGTAGCAATGGGTTAGTTAAGAGAGGGGCAACATA  287
             |||||||||||| | |||||||||| |||||| |||||| || ||||| |||| ||||||
Sbjct  906   CGGTAGTTCTCAATTGACACCTCATTGTAGCAGTGGGTTTGTGAAGAGCGGGGTAACATA  965

Query  288   CATTGTCTCAGATGATCTTACTATTTGCGTAAAGAAGAAGTTTGATGTGAACTTGGACGA  347
             ||| |||||||||||||||||||||||| |||||||||||||||| ||||||||||| ||
Sbjct  966   CATGGTCTCAGATGATCTTACTATTTGCATAAAGAAGAAGTTTGAAGTGAACTTGGATGA  1025

Query  348   TATTTTTGAGCATGAAATCAACATTGGCAAAACACATAGCC  388
             ||||   |||||||||||||||||| ||||||||||| |||
Sbjct  1026  TATTGAGGAGCATGAAATCAACATTAGCAAAACACAT-GCC  1065



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 17742348885


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5