BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT1G11150.1 Length=2654 Score E Sequences producing significant alignments: (Bits) Value Ahg910864 jgi|Araly1|910864|Al_scaffold_0001_1118 1646 0.0 Ahg471475 jgi|Araly1|471475|fgenesh2_kg.1__1429__AT1G13200.1 883 0.0 > Ahg910864 jgi|Araly1|910864|Al_scaffold_0001_1118 Length=1224 Score = 1646 bits (891), Expect = 0.0 Identities = 1117/1224 (91%), Gaps = 24/1224 (2%) Strand=Plus/Plus Query 1429 aaaaaaaaaaaga-aaaaaaaagaaagaagaagaagaaacgagaagCCAGTGATTGCTCC 1487 |||| || ||||| | || ||| |||||||||||||||||||||||||||||||||||| Sbjct 11 AAAATAAGAAAGATACGAAGAAG-AAGAAGAAGAAGAAACGAGAAGCCAGTGATTGCTCC 69 Query 1488 ATCATCTCTGCCAAATGACGTCGTAGAGGAAATCTTCTTACGATTTCCAGTGAAAGCACT 1547 ||||||||||||||| |||||||| |||||||||||||| |||||||||||||||||||| Sbjct 70 ATCATCTCTGCCAAACGACGTCGTGGAGGAAATCTTCTTGCGATTTCCAGTGAAAGCACT 129 Query 1548 ATTTCGACTCAAAACTCTCTCGAAACAATGGAGATCGACGATCGAGTCTCAATCCTTCGA 1607 | || | | ||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 130 A-TT---C-C--GACTCTCTCGAAACAATGGAGATCGACGATCGAGTCTCAATCCTTCGA 182 Query 1608 AGAGAGACACTTAAAGATCGCCGAGCGATTCCATGCACATCATCCTAGGGTTATGGTGAT 1667 |||||||||||| | ||||||||||| ||||| || ||||||||| ||||||||||| Sbjct 183 AGAGAGACACTTGAGGATCGCCGAGCAATTCCGTGTGGGTCATCCTAGAGTTATGGTGAT 242 Query 1668 CACTGAAAAAGATCCCCTAAAACTATTGCCTCGACCTCGTCCAGACGCAGACATTGGTTT 1727 ||||||||||||||||||||||||| |||||| | ||||||||||| ||||||||||||| Sbjct 243 CACTGAAAAAGATCCCCTAAAACTAATGCCTCTAGCTCGTCCAGACACAGACATTGGTTT 302 Query 1728 TAGGTTATTCTGCTTGGAATCGGGTTCTCTTCTATCCTTTATTCTTCTCAATTTCCCTCA 1787 ||||| ||||||||||||||||||||||||||||||||||| |||||||||||| ||||| Sbjct 303 TAGGTCATTCTGCTTGGAATCGGGTTCTCTTCTATCCTTTACTCTTCTCAATTTTCCTCA 362 Query 1788 AAGTTTCGCCAACTATATCTACGTTTCTGGATGCTGCGATGGCCTTTTCTGCGTCCATTC 1847 |||||||||| |||||||||| ||||||||||| |||||||||||||||||| ||||||| Sbjct 363 AAGTTTCGCCCACTATATCTATGTTTCTGGATGTTGCGATGGCCTTTTCTGCATCCATTC 422 Query 1848 ACCGAGATCGCAAGCCATGTATGTAGTAAATCCGGCTACACGGTGGTTACGACAACTTCC 1907 |||| |||| ||||| | ||||| || |||||||| |||| ||||||||| |||||||| Sbjct 423 CCCGAAATCGGAAGCCGTATATGTTGTTAATCCGGCCACACAGTGGTTACGGCAACTTCC 482 Query 1908 TCCAGCTAGGTTTCAGATTTTGATGCA-AA----AGGCC-ACTTATAGAGATTGGTTAGA 1961 ||||||||||||||| ||||||||||| || | || |||| |||||||||| |||| Sbjct 483 TCCAGCTAGGTTTCAAATTTTGATGCACAAGTTTAACCCTACTTTTAGAGATTGGATAGA 542 Query 1962 CATGAAGTCAGTCTTTCATCTAGCATTCGTGAAGGCCAATGATTATAAATTAGTGTGGTT 2021 |||| ||||||||||||||||||| ||||||||||||| | |||| |||||||||||||| Sbjct 543 CATGGAGTCAGTCTTTCATCTAGCCTTCGTGAAGGCCACTAATTACAAATTAGTGTGGTT 602 Query 2022 GTATAATTCTGACAAGTACAATGCTGATGCCTTGAGTCCAAACGAGGGAGTTACAAAGTG 2081 |||||||||||| ||||||||||||||||||| ||||||||||||||||||||| ||||| Sbjct 603 GTATAATTCTGATAAGTACAATGCTGATGCCTCGAGTCCAAACGAGGGAGTTACCAAGTG 662 Query 2082 CGAGGTTTTTGACTTTAGGGCAAACTCTTGGAGAG-ACTTGACTTGCACTCCAAGTTATC 2140 ||||||||||||||| ||||||||| ||||||| | ||||| |||||||||||||||||| Sbjct 663 CGAGGTTTTTGACTTCAGGGCAAACGCTTGGAG-GTACTTGGCTTGCACTCCAAGTTATC 721 Query 2141 GGATATTTCATGGCCAAATACCAGCATGTGCAAACGGGTCAGTATATTGGTTGACGGAGC 2200 |||||| ||||| |||||||||||||||||||||||||||||||||||||| ||||||| Sbjct 722 GGATATATCATGATCAAATACCAGCATGTGCAAACGGGTCAGTATATTGGTTCACGGAGC 781 Query 2201 CATATAATGATAAAATCGAAGTAGTGGCTTTTGATATTCATGCCGAATCATTCCGGTTGC 2260 ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| Sbjct 782 CATATAATGATAAAATCGAAGTAGTGGCTTTTGATATTCATACCGAATCATTCCGGTTGC 841 Query 2261 TGCCTAAGATCAAACCGGCTATTGCTGGTTCAGATCCGATGCATATTGACATGTGCACTC 2320 |||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||| Sbjct 842 TGCCTAAGATTAAACCGGCTATTGCTGGTTCAGATCCGAGGCATATTGACATGTGCACTC 901 Query 2321 TGGATAATGGTTTGTGCATGTCGAAAAGAGAACCGAATACGTTGGTCCAAGAGATTTGGA 2380 ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| Sbjct 902 TGGATAATGGTTTGTGCATGTCGAAAAGAGAACCGGATACGTTGGTCCAAGAGATTTGGA 961 Query 2381 GGTTGAAATCATCAGAAGACTCATGGGAGAAGATTTGTACTATAGATTTGCTTTCATGTT 2440 ||||||||||||||||||||| |||||||||||||| ||| || ||||||||||| |||| Sbjct 962 GGTTGAAATCATCAGAAGACTTATGGGAGAAGATTTATACCATTGATTTGCTTTCTTGTT 1021 Query 2441 CTTCTTCCCGGACTCAGTTTCGTGATGAATTTTACTGG-GACGAGCA-GGATTTGGTTAA 2498 |||||||||||| ||||||||| ||||||||| ||||| | | || | |||||||||| | Sbjct 1022 CTTCTTCCCGGAATCAGTTTCGCGATGAATTTGACTGGAG-C-AGGAAGGATTTGGTTGA 1079 Query 2499 TCCATCCACACCTGTGGCGTTATGCAAGAACAAGACA-ATTTTGCTCTCACATCGCTATT 2557 |||||||||||| |||||| ||||||||||||||| | || ||||||||||||||||||| Sbjct 1080 TCCATCCACACCGGTGGCGGTATGCAAGAACAAGA-AGATCTTGCTCTCACATCGCTATT 1138 Query 2558 CCCGCGGTCTGCTAAAATATGATCCCCTAACAAAGTCTCTAGCTTCATTTTACCAACGTC 2617 ||||||||||| ||||||||||||||||||||| ||||||| |||| |||||||||| || Sbjct 1139 CCCGCGGTCTGGTAAAATATGATCCCCTAACAAGGTCTCTAACTTCGTTTTACCAACATC 1198 Query 2618 CTTTGTCTCGGAGAAAAGTTTCTT 2641 |||||||| |||||||||| ||| Sbjct 1199 CTTTGTCTAAGAGAAAAGTT-CTT 1221 > Ahg471475 jgi|Araly1|471475|fgenesh2_kg.1__1429__AT1G13200.1 Length=1266 Score = 883 bits (478), Expect = 0.0 Identities = 863/1043 (83%), Gaps = 49/1043 (5%) Strand=Plus/Plus Query 1438 aagaaaaaaaaaga-aagaagaagaagaaacgagaagCCAGTGATTGCTCCATCATCTCT 1496 ||||| || || || ||||||||||||||||||||||| ||| | ||||||||||| || Sbjct 75 AAGAATAATAAGGAGAAGAAGAAGAAGAAACGAGAAGCGAGTAAAGGCTCCATCATCACT 134 Query 1497 GCCAAATGACGTCGTAGAGGAAATCTTCTTACGATTTCCAGTGAAAGCACTATTTCGACT 1556 ||||| ||| ||||||| ||||| |||||| ||||||| |||||||| ||| | ||||| Sbjct 135 ACCAAACGACATCGTAGAAGAAATTTTCTTAAGATTTCCGGTGAAAGCCCTAATCCGACT 194 Query 1557 CAAAACTCTCTCGAAACAATGGAGATCGACGATCGAGTCT--CAATCCTTCGAAGAGAGA 1614 ||| ||||||| ||| | |||| ||| |||||||||||| || | || ||||||||| Sbjct 195 CAAGTCTCTCTCAAAATATTGGAAATCAACGATCGAGTCTCGCAGT--TTTGAAGAGAGA 252 Query 1615 CACTTAAAGATCGCCGAGCGATTCCATGCA--CATCATCCTAGGGTTATGGTGATCACTG 1672 |||| ||| |||| ||| | || |||| ||||||| | ||| ||||| ||||| | Sbjct 253 TACTTGAAGCTCGCTAAGC-AAGCC-TGCATGGATCATCCCAAGGTCATGGTCATCACAG 310 Query 1673 AAAAAGATCCCCTAA-A-ACTATTGCCTCGACCTCGTCCAG-ACGCAGACATTGGTTTTA 1729 || |||||||| ||| | | || | | | |||||| | | ||||||||||||||| Sbjct 311 AAGAAGATCCCATAAGAGA-AATCGGGT--A--TCGTCC-GTTCACAGACATTGGTTTTA 364 Query 1730 GG-TTATTCTGCTTGGAATCGGGTTCTCTTCTATCCTTTATTCTTCTCAATTTCCCTCAA 1788 || | ||||||||||||||| |||||||||||||| || || |||||||||||||||| Sbjct 365 GGACGA-TCTGCTTGGAATCGGCTTCTCTTCTATCCTATACTCGTCTCAATTTCCCTCAA 423 Query 1789 AGTTTC-GCCAACTATATCTACGTTTCTGGATGCTGCGATGGCCTTTTCTGCGTCCATTC 1847 | ||| || ||| ||| | | |||| | |||| |||||||||||||| ||||||| Sbjct 424 GGGTTCTTCC-ACTGGATCAAAATCTCTGAAAGCTGTGATGGCCTTTTCTGTATCCATTC 482 Query 1848 ACCGAGATCGCAAGCCATGTATGTAGTAAATCCGGCTACACGGTGGTTACGACAACTTCC 1907 ||| | ||| || | | |||||||| |||||||||||||||||| | || | |||||| Sbjct 483 ACCAAAATCACATTCTGTATATGTAGTTAATCCGGCTACACGGTGGCTCCGCCTACTTCC 542 Query 1908 TCCAGCTAGGTTTCAGATTTTGAT--GCAA----AAGGCCACTTATAGAGATTGG--T-T 1958 ||| ||| |||||||||||||||| ||| || |||| | | || ||| | | Sbjct 543 TCCGGCTGGGTTTCAGATTTTGATCCACAAGTTTAACCCCACGGAGCGTGAGTGGAATAT 602 Query 1959 AGACATGAAGTCAGTCTTTCATCTAGCATTCGTGAAGGCCAATGATTATAAATTAGTGTG 2018 ||| ||||| ||| ||||||||||||||||||||||||||| ||||| ||||||||||| Sbjct 603 AGAAATGAAATCAATCTTTCATCTAGCATTCGTGAAGGCCACCGATTACAAATTAGTGTG 662 Query 2019 GTTGTATAATTCTGACAAGTACAATGCTGATGCCTTGAGTCCAAACGAGGGAGTTACAAA 2078 ||||||||||| ||| ||||||| ||||||||| | ||||||||||| |||||| ||||| Sbjct 663 GTTGTATAATTGTGATAAGTACATTGCTGATGCGTCGAGTCCAAACGTGGGAGTCACAAA 722 Query 2079 GTGCGAGGTTTTTGACTTTAGGGCAAACT-CTTGGAGAG-ACTTGACTTGCACTCCAAGT 2136 ||||||||||||||||||||||| ||| | ||||||| | ||||| |||||||||||||| Sbjct 723 GTGCGAGGTTTTTGACTTTAGGGTAAA-TGCTTGGAG-GTACTTGGCTTGCACTCCAAGT 780 Query 2137 TATCGGATATTTCATGGCCAAATA-CCAGCATGTGCAAACGGGTCAGTATATTGGTTGAC 2195 ||||||||||| ||| ||||| | ||||||| |||||||||||| || |||||||| || Sbjct 781 CATCGGATATTTTATGACCAAA-AGCCAGCATCTGCAAACGGGTCGGTTTATTGGTTTAC 839 Query 2196 GGAGCCATATAATGATAA-AATCGAAGTAGTGGCTTTTGATATTCATGCCGAATCATTCC 2254 ||| ||||||||||| || |||||||||||||||||||||||||||| ||||| |||||| Sbjct 840 GGAACCATATAATGA-AAGAATCGAAGTAGTGGCTTTTGATATTCATACCGAAACATTCC 898 Query 2255 GGTTGCTGCCTAAGATCAAA-CCGGCTATTGCTGGTTCAGATCCG-ATGCATATTGACAT 2312 |||||||||||||||| ||| ||||||||||||||||||||||| | ||||||||||| Sbjct 899 GGTTGCTGCCTAAGAT-AAATCCGGCTATTGCTGGTTCAGATCCTCAC-CATATTGACAT 956 Query 2313 GTGCACTCTGGATAATGGTTTGTGCATGTCGAAAAGAGAAC-CGAATACGT-TGGTCCAA 2370 |||||||||||||||| ||||||| ||||||||||||||| ||| ||| | || ||||| Sbjct 957 GTGCACTCTGGATAATAGTTTGTGTATGTCGAAAAGAGAAAACGA-TAC-TATGATCCAA 1014 Query 2371 GAGATTTGGAGGTTGAAATCATCAGAAGACTCATGGGAGAAGATTTGT-ACTATAGATTT 2429 || ||||||||| | ||| ||||||||||| ||||||||||||||| | || |||||||| Sbjct 1015 GATATTTGGAGGCTAAAACCATCAGAAGACACATGGGAGAAGATTT-TCACCATAGATTT 1073 Query 2430 GCTTTCATGTTCTTCTTCCCGGA 2452 |||||| ||||||||||| |||| Sbjct 1074 GCTTTCTTGTTCTTCTTCTCGGA 1096 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 100101163860 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5