BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G11150.1
Length=2654
Score E
Sequences producing significant alignments: (Bits) Value
Ahg910864 jgi|Araly1|910864|Al_scaffold_0001_1118 1646 0.0
Ahg471475 jgi|Araly1|471475|fgenesh2_kg.1__1429__AT1G13200.1 883 0.0
> Ahg910864 jgi|Araly1|910864|Al_scaffold_0001_1118
Length=1224
Score = 1646 bits (891), Expect = 0.0
Identities = 1117/1224 (91%), Gaps = 24/1224 (2%)
Strand=Plus/Plus
Query 1429 aaaaaaaaaaaga-aaaaaaaagaaagaagaagaagaaacgagaagCCAGTGATTGCTCC 1487
|||| || ||||| | || ||| ||||||||||||||||||||||||||||||||||||
Sbjct 11 AAAATAAGAAAGATACGAAGAAG-AAGAAGAAGAAGAAACGAGAAGCCAGTGATTGCTCC 69
Query 1488 ATCATCTCTGCCAAATGACGTCGTAGAGGAAATCTTCTTACGATTTCCAGTGAAAGCACT 1547
||||||||||||||| |||||||| |||||||||||||| ||||||||||||||||||||
Sbjct 70 ATCATCTCTGCCAAACGACGTCGTGGAGGAAATCTTCTTGCGATTTCCAGTGAAAGCACT 129
Query 1548 ATTTCGACTCAAAACTCTCTCGAAACAATGGAGATCGACGATCGAGTCTCAATCCTTCGA 1607
| || | | |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 130 A-TT---C-C--GACTCTCTCGAAACAATGGAGATCGACGATCGAGTCTCAATCCTTCGA 182
Query 1608 AGAGAGACACTTAAAGATCGCCGAGCGATTCCATGCACATCATCCTAGGGTTATGGTGAT 1667
|||||||||||| | ||||||||||| ||||| || ||||||||| |||||||||||
Sbjct 183 AGAGAGACACTTGAGGATCGCCGAGCAATTCCGTGTGGGTCATCCTAGAGTTATGGTGAT 242
Query 1668 CACTGAAAAAGATCCCCTAAAACTATTGCCTCGACCTCGTCCAGACGCAGACATTGGTTT 1727
||||||||||||||||||||||||| |||||| | ||||||||||| |||||||||||||
Sbjct 243 CACTGAAAAAGATCCCCTAAAACTAATGCCTCTAGCTCGTCCAGACACAGACATTGGTTT 302
Query 1728 TAGGTTATTCTGCTTGGAATCGGGTTCTCTTCTATCCTTTATTCTTCTCAATTTCCCTCA 1787
||||| ||||||||||||||||||||||||||||||||||| |||||||||||| |||||
Sbjct 303 TAGGTCATTCTGCTTGGAATCGGGTTCTCTTCTATCCTTTACTCTTCTCAATTTTCCTCA 362
Query 1788 AAGTTTCGCCAACTATATCTACGTTTCTGGATGCTGCGATGGCCTTTTCTGCGTCCATTC 1847
|||||||||| |||||||||| ||||||||||| |||||||||||||||||| |||||||
Sbjct 363 AAGTTTCGCCCACTATATCTATGTTTCTGGATGTTGCGATGGCCTTTTCTGCATCCATTC 422
Query 1848 ACCGAGATCGCAAGCCATGTATGTAGTAAATCCGGCTACACGGTGGTTACGACAACTTCC 1907
|||| |||| ||||| | ||||| || |||||||| |||| ||||||||| ||||||||
Sbjct 423 CCCGAAATCGGAAGCCGTATATGTTGTTAATCCGGCCACACAGTGGTTACGGCAACTTCC 482
Query 1908 TCCAGCTAGGTTTCAGATTTTGATGCA-AA----AGGCC-ACTTATAGAGATTGGTTAGA 1961
||||||||||||||| ||||||||||| || | || |||| |||||||||| ||||
Sbjct 483 TCCAGCTAGGTTTCAAATTTTGATGCACAAGTTTAACCCTACTTTTAGAGATTGGATAGA 542
Query 1962 CATGAAGTCAGTCTTTCATCTAGCATTCGTGAAGGCCAATGATTATAAATTAGTGTGGTT 2021
|||| ||||||||||||||||||| ||||||||||||| | |||| ||||||||||||||
Sbjct 543 CATGGAGTCAGTCTTTCATCTAGCCTTCGTGAAGGCCACTAATTACAAATTAGTGTGGTT 602
Query 2022 GTATAATTCTGACAAGTACAATGCTGATGCCTTGAGTCCAAACGAGGGAGTTACAAAGTG 2081
|||||||||||| ||||||||||||||||||| ||||||||||||||||||||| |||||
Sbjct 603 GTATAATTCTGATAAGTACAATGCTGATGCCTCGAGTCCAAACGAGGGAGTTACCAAGTG 662
Query 2082 CGAGGTTTTTGACTTTAGGGCAAACTCTTGGAGAG-ACTTGACTTGCACTCCAAGTTATC 2140
||||||||||||||| ||||||||| ||||||| | ||||| ||||||||||||||||||
Sbjct 663 CGAGGTTTTTGACTTCAGGGCAAACGCTTGGAG-GTACTTGGCTTGCACTCCAAGTTATC 721
Query 2141 GGATATTTCATGGCCAAATACCAGCATGTGCAAACGGGTCAGTATATTGGTTGACGGAGC 2200
|||||| ||||| |||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 722 GGATATATCATGATCAAATACCAGCATGTGCAAACGGGTCAGTATATTGGTTCACGGAGC 781
Query 2201 CATATAATGATAAAATCGAAGTAGTGGCTTTTGATATTCATGCCGAATCATTCCGGTTGC 2260
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 782 CATATAATGATAAAATCGAAGTAGTGGCTTTTGATATTCATACCGAATCATTCCGGTTGC 841
Query 2261 TGCCTAAGATCAAACCGGCTATTGCTGGTTCAGATCCGATGCATATTGACATGTGCACTC 2320
|||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 842 TGCCTAAGATTAAACCGGCTATTGCTGGTTCAGATCCGAGGCATATTGACATGTGCACTC 901
Query 2321 TGGATAATGGTTTGTGCATGTCGAAAAGAGAACCGAATACGTTGGTCCAAGAGATTTGGA 2380
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 902 TGGATAATGGTTTGTGCATGTCGAAAAGAGAACCGGATACGTTGGTCCAAGAGATTTGGA 961
Query 2381 GGTTGAAATCATCAGAAGACTCATGGGAGAAGATTTGTACTATAGATTTGCTTTCATGTT 2440
||||||||||||||||||||| |||||||||||||| ||| || ||||||||||| ||||
Sbjct 962 GGTTGAAATCATCAGAAGACTTATGGGAGAAGATTTATACCATTGATTTGCTTTCTTGTT 1021
Query 2441 CTTCTTCCCGGACTCAGTTTCGTGATGAATTTTACTGG-GACGAGCA-GGATTTGGTTAA 2498
|||||||||||| ||||||||| ||||||||| ||||| | | || | |||||||||| |
Sbjct 1022 CTTCTTCCCGGAATCAGTTTCGCGATGAATTTGACTGGAG-C-AGGAAGGATTTGGTTGA 1079
Query 2499 TCCATCCACACCTGTGGCGTTATGCAAGAACAAGACA-ATTTTGCTCTCACATCGCTATT 2557
|||||||||||| |||||| ||||||||||||||| | || |||||||||||||||||||
Sbjct 1080 TCCATCCACACCGGTGGCGGTATGCAAGAACAAGA-AGATCTTGCTCTCACATCGCTATT 1138
Query 2558 CCCGCGGTCTGCTAAAATATGATCCCCTAACAAAGTCTCTAGCTTCATTTTACCAACGTC 2617
||||||||||| ||||||||||||||||||||| ||||||| |||| |||||||||| ||
Sbjct 1139 CCCGCGGTCTGGTAAAATATGATCCCCTAACAAGGTCTCTAACTTCGTTTTACCAACATC 1198
Query 2618 CTTTGTCTCGGAGAAAAGTTTCTT 2641
|||||||| |||||||||| |||
Sbjct 1199 CTTTGTCTAAGAGAAAAGTT-CTT 1221
> Ahg471475 jgi|Araly1|471475|fgenesh2_kg.1__1429__AT1G13200.1
Length=1266
Score = 883 bits (478), Expect = 0.0
Identities = 863/1043 (83%), Gaps = 49/1043 (5%)
Strand=Plus/Plus
Query 1438 aagaaaaaaaaaga-aagaagaagaagaaacgagaagCCAGTGATTGCTCCATCATCTCT 1496
||||| || || || ||||||||||||||||||||||| ||| | ||||||||||| ||
Sbjct 75 AAGAATAATAAGGAGAAGAAGAAGAAGAAACGAGAAGCGAGTAAAGGCTCCATCATCACT 134
Query 1497 GCCAAATGACGTCGTAGAGGAAATCTTCTTACGATTTCCAGTGAAAGCACTATTTCGACT 1556
||||| ||| ||||||| ||||| |||||| ||||||| |||||||| ||| | |||||
Sbjct 135 ACCAAACGACATCGTAGAAGAAATTTTCTTAAGATTTCCGGTGAAAGCCCTAATCCGACT 194
Query 1557 CAAAACTCTCTCGAAACAATGGAGATCGACGATCGAGTCT--CAATCCTTCGAAGAGAGA 1614
||| ||||||| ||| | |||| ||| |||||||||||| || | || |||||||||
Sbjct 195 CAAGTCTCTCTCAAAATATTGGAAATCAACGATCGAGTCTCGCAGT--TTTGAAGAGAGA 252
Query 1615 CACTTAAAGATCGCCGAGCGATTCCATGCA--CATCATCCTAGGGTTATGGTGATCACTG 1672
|||| ||| |||| ||| | || |||| ||||||| | ||| ||||| ||||| |
Sbjct 253 TACTTGAAGCTCGCTAAGC-AAGCC-TGCATGGATCATCCCAAGGTCATGGTCATCACAG 310
Query 1673 AAAAAGATCCCCTAA-A-ACTATTGCCTCGACCTCGTCCAG-ACGCAGACATTGGTTTTA 1729
|| |||||||| ||| | | || | | | |||||| | | |||||||||||||||
Sbjct 311 AAGAAGATCCCATAAGAGA-AATCGGGT--A--TCGTCC-GTTCACAGACATTGGTTTTA 364
Query 1730 GG-TTATTCTGCTTGGAATCGGGTTCTCTTCTATCCTTTATTCTTCTCAATTTCCCTCAA 1788
|| | ||||||||||||||| |||||||||||||| || || ||||||||||||||||
Sbjct 365 GGACGA-TCTGCTTGGAATCGGCTTCTCTTCTATCCTATACTCGTCTCAATTTCCCTCAA 423
Query 1789 AGTTTC-GCCAACTATATCTACGTTTCTGGATGCTGCGATGGCCTTTTCTGCGTCCATTC 1847
| ||| || ||| ||| | | |||| | |||| |||||||||||||| |||||||
Sbjct 424 GGGTTCTTCC-ACTGGATCAAAATCTCTGAAAGCTGTGATGGCCTTTTCTGTATCCATTC 482
Query 1848 ACCGAGATCGCAAGCCATGTATGTAGTAAATCCGGCTACACGGTGGTTACGACAACTTCC 1907
||| | ||| || | | |||||||| |||||||||||||||||| | || | ||||||
Sbjct 483 ACCAAAATCACATTCTGTATATGTAGTTAATCCGGCTACACGGTGGCTCCGCCTACTTCC 542
Query 1908 TCCAGCTAGGTTTCAGATTTTGAT--GCAA----AAGGCCACTTATAGAGATTGG--T-T 1958
||| ||| |||||||||||||||| ||| || |||| | | || ||| | |
Sbjct 543 TCCGGCTGGGTTTCAGATTTTGATCCACAAGTTTAACCCCACGGAGCGTGAGTGGAATAT 602
Query 1959 AGACATGAAGTCAGTCTTTCATCTAGCATTCGTGAAGGCCAATGATTATAAATTAGTGTG 2018
||| ||||| ||| ||||||||||||||||||||||||||| ||||| |||||||||||
Sbjct 603 AGAAATGAAATCAATCTTTCATCTAGCATTCGTGAAGGCCACCGATTACAAATTAGTGTG 662
Query 2019 GTTGTATAATTCTGACAAGTACAATGCTGATGCCTTGAGTCCAAACGAGGGAGTTACAAA 2078
||||||||||| ||| ||||||| ||||||||| | ||||||||||| |||||| |||||
Sbjct 663 GTTGTATAATTGTGATAAGTACATTGCTGATGCGTCGAGTCCAAACGTGGGAGTCACAAA 722
Query 2079 GTGCGAGGTTTTTGACTTTAGGGCAAACT-CTTGGAGAG-ACTTGACTTGCACTCCAAGT 2136
||||||||||||||||||||||| ||| | ||||||| | ||||| ||||||||||||||
Sbjct 723 GTGCGAGGTTTTTGACTTTAGGGTAAA-TGCTTGGAG-GTACTTGGCTTGCACTCCAAGT 780
Query 2137 TATCGGATATTTCATGGCCAAATA-CCAGCATGTGCAAACGGGTCAGTATATTGGTTGAC 2195
||||||||||| ||| ||||| | ||||||| |||||||||||| || |||||||| ||
Sbjct 781 CATCGGATATTTTATGACCAAA-AGCCAGCATCTGCAAACGGGTCGGTTTATTGGTTTAC 839
Query 2196 GGAGCCATATAATGATAA-AATCGAAGTAGTGGCTTTTGATATTCATGCCGAATCATTCC 2254
||| ||||||||||| || |||||||||||||||||||||||||||| ||||| ||||||
Sbjct 840 GGAACCATATAATGA-AAGAATCGAAGTAGTGGCTTTTGATATTCATACCGAAACATTCC 898
Query 2255 GGTTGCTGCCTAAGATCAAA-CCGGCTATTGCTGGTTCAGATCCG-ATGCATATTGACAT 2312
|||||||||||||||| ||| ||||||||||||||||||||||| | |||||||||||
Sbjct 899 GGTTGCTGCCTAAGAT-AAATCCGGCTATTGCTGGTTCAGATCCTCAC-CATATTGACAT 956
Query 2313 GTGCACTCTGGATAATGGTTTGTGCATGTCGAAAAGAGAAC-CGAATACGT-TGGTCCAA 2370
|||||||||||||||| ||||||| ||||||||||||||| ||| ||| | || |||||
Sbjct 957 GTGCACTCTGGATAATAGTTTGTGTATGTCGAAAAGAGAAAACGA-TAC-TATGATCCAA 1014
Query 2371 GAGATTTGGAGGTTGAAATCATCAGAAGACTCATGGGAGAAGATTTGT-ACTATAGATTT 2429
|| ||||||||| | ||| ||||||||||| ||||||||||||||| | || ||||||||
Sbjct 1015 GATATTTGGAGGCTAAAACCATCAGAAGACACATGGGAGAAGATTT-TCACCATAGATTT 1073
Query 2430 GCTTTCATGTTCTTCTTCCCGGA 2452
|||||| ||||||||||| ||||
Sbjct 1074 GCTTTCTTGTTCTTCTTCTCGGA 1096
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 100101163860
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5