BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G11170.1
Length=1763
Score E
Sequences producing significant alignments: (Bits) Value
Ahg910866 jgi|Araly1|910866|Al_scaffold_0001_1120 2095 0.0
Ahg475199 jgi|Araly1|475199|fgenesh2_kg.2__329__AT1G61240.4 1011 0.0
> Ahg910866 jgi|Araly1|910866|Al_scaffold_0001_1120
Length=1311
Score = 2095 bits (1134), Expect = 0.0
Identities = 1258/1316 (96%), Gaps = 16/1316 (1%)
Strand=Plus/Plus
Query 231 ATGATACATGGTTTGCCATCTATGAAGTCTATCAAATCATTGAAGTCACTTGTTAAAAGA 290
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1 ATGATACATGGTTTGCCATCTATGAAGTCGATCAAATCATTGAAGTCACTTGTTAAAAGA 60
Query 291 AAAACCAATGCTCAAGAAGTGAGTAAATCCGGGTGGAAAATGAAGCCCTTTTTGGCTCTC 350
||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||
Sbjct 61 AAAACCAATGCTCAAGAAGTGAGTAAATCCGGGTGGAAAATGAAGCCTTTTTTAGCTCTC 120
Query 351 ATGTGTACAGCTCTTTTGATCTTTTGGTATAAGACCACAAATATTCAGTTTGAACAAACA 410
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 121 ATGTGTACAGCTCTTTTGATCTTTTGGTATAAGACCACAAATATTCAGTTTGAACAAACA 180
Query 411 GAGATAGAAGAAACAGATTATCCTTTTGACATGGCTAAGGAATCTGAAGCAGTTAACGAT 470
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 181 GAGATAGAAGAAACAGATTATCCTTTTGACATGGCAAAGGAATCTGAAGCAGTTAACGAT 240
Query 471 AAATTAAAAGGCTTGCCTCGTGGAATCATACAGTCTAGATCAGATCTTGAATTAAAGCCT 530
||||||||||||||||||| ||||||||||||| |||||||||||||||||||||| |||
Sbjct 241 AAATTAAAAGGCTTGCCTCATGGAATCATACAGCCTAGATCAGATCTTGAATTAAAACCT 300
Query 531 CTCTGGTCTAGAGGTAGTCTGAGGTCAAAGGGTGTGGAAATGACTAACCGTAACTTGTTG 590
|||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 301 CTCTGGTCTAGAAGTAGTCTGAGGTCAAAGGGTGTTGAAATGACTAACCGTAACTTGTTG 360
Query 591 GCAATACCCGTAGGACTTAAGCAAAAGGGTAACGTCGACGCTCTTGTAAAGAAGTTTCTT 650
||||||||||||||| |||||||||||| ||| ||||| |||||||||||||||||||||
Sbjct 361 GCAATACCCGTAGGAATTAAGCAAAAGGTTAATGTCGATGCTCTTGTAAAGAAGTTTCTT 420
Query 651 CCCGCGAATTTCACGATTGTTCTTTTCCATTATGATGGAAATATGGATAAATGGTGGGAT 710
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 421 CCCGCGAATTTCACGATTGTTCTTTTCCATTACGATGGAAATATGGATAAATGGTGGGAT 480
Query 711 CTGGAGTGGAGTTCAAAATCCATACATATAGTTGCACAAAACCAGACTAAATGGTGGTTT 770
|| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 481 CTAGAGTGGAGTTCAAAGGCCATACATATAGTTGCACAAAACCAGACTAAATGGTGGTTT 540
Query 771 GCAAAACGATTCCTCCATCCGGATGTTGTATCCATTTATGATTATATTTTTCTTTGGGAC 830
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 541 GCAAAACGATTCCTCCATCCAGATGTTGTATCCATTTATGATTATATTTTTCTTTGGGAC 600
Query 831 GAGGATCTTGGAGTAGAGAATTTCAATCCAGAGAGATATTTGAAGATAGTTAAATCAGTG 890
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 601 GAGGATCTTGGAGTAGAGAATTTCAATCCAGAGAGATATTTGAGGATAGTTAAATCAGTG 660
Query 891 GGACTGGAGATATCTCAACCGGCTTTGGACCACAACTCGACTGAAATACACCATAAAATC 950
||||||||||||||||||||||||||||| || ||||| |||||||| ||||||||||||
Sbjct 661 GGACTGGAGATATCTCAACCGGCTTTGGATCATAACTCAACTGAAATCCACCATAAAATC 720
Query 951 ACTCTCCGTTCTAAAACAAAGAAATTTCATAGGAGAGTTTACATCAATAGAGGCCATAAA 1010
|| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 721 ACACTCCGTTCTAGGACAAAGAAATTTCATAGGAGAGTTTACATCAATAGAGGCCATAAA 780
Query 1011 AGATGTTCTAATACTAGCT-CAGATCCTCCTTGCACCGGATTTGTTGAAGGAATGGCTCC 1069
|| |||||||||||||| | ||||||||||||||||||||||||||||||||||||||||
Sbjct 781 AGGTGTTCTAATACTAG-TGCAGATCCTCCTTGCACCGGATTTGTTGAAGGAATGGCTCC 839
Query 1070 GGTGTTTTCGAAAGCTGCTTGGCTTTGCACTTGGAATCTTATACAGAATGATTTGGTTCA 1129
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 840 GGTGTTTTCGAAAGCTGCTTGGTTTTGCACTTGGAATCTTATACAGAATGATTTGGTTCA 899
Query 1130 TGGATGGGGAATGGATATGAAACTTGGGTACTGCGCACAGGGAGACCGAACGAAAAACGT 1189
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 900 TGGATGGGGAATGGATATGAAACTTGGGTACTGCGCACAGGGAGACCGAACGAAAAACGT 959
Query 1190 AGGGATTGTGGATAGCGAGTATATCCTTCATCAAGGCATTCAAACTTTAGGTGAAAGTGT 1249
||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 960 AGGGATTGTGGATAGTGAGTATATCGTTCATCAAGGCATTCAAACTTTAGGTGAAAGTGT 1019
Query 1250 TCCTGAGAAGAAGAAGACGGCTCGTGATGTT-GGGACCAGGAGACA-AGGCCATACAACT 1307
|||||| ||||||| || || ||||||||| ||| |||||||||| || |||||||||
Sbjct 1020 TCCTGAAAAGAAGACCACTGCGCGTGATGTTAGGG-CCAGGAGACACAG-CCATACAACC 1077
Query 1308 TTTGATTCAAGAACCGAGATAAGGAGACAATCGACATGGGAGCTTCAAACTTTTAAAGAA 1367
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1078 TTTGATTCAAGAACCGAGATAAGGAGACAATCGACATGGGAGCTTCAAACTTTTAAAGAA 1137
Query 1368 CGATGGAGCAAAGCGGTAGAAGAAGACATTAAGTGGATCGATCCATCGTCATCAAGCTCG 1427
|||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||
Sbjct 1138 CGATGGAGCAAAGCGGTAGAAGAAGACAATAACTGGATCGATCCATCGTCATCAAGCTCG 1197
Query 1428 ATGACAAAGAGGA--A-GAGTAACGGTAATAACAGAAGATTAAGGCGTGGTAGTAGTAGT 1484
||||||||||||| | ||||||||||||||||||||||||||||||||||| ||||
Sbjct 1198 ATGACAAAGAGGAGGACGAGTAACGGTAATAACAGAAGATTAAGGCGTGGTACTAGT--- 1254
Query 1485 AGTCACCGAGTAAAGCATAAGAGAAGTCAAGAGACATCAAGAACAACAACAACACA 1540
|||||||||||||||||||||| ||| |||||||||| |||||||| ||||||
Sbjct 1255 ---CACCGAGTAAAGCATAAGAGAACTCAGGAGACATCAACAACAACAA-AACACA 1306
> Ahg475199 jgi|Araly1|475199|fgenesh2_kg.2__329__AT1G61240.4
Length=1779
Score = 1011 bits (547), Expect = 0.0
Identities = 985/1191 (83%), Gaps = 51/1191 (4%)
Strand=Plus/Plus
Query 257 GTCTATCAAATCATTGAAGTCACTTGTTAAAAGAA-AAACCAATGCTCAAGAAGTGAGTA 315
|||||| ||||||| ||||||||||||||| |||| ||| |||||||||||||| | |||
Sbjct 393 GTCTATTAAATCATGGAAGTCACTTGTTAAGAGAAGAAA-CAATGCTCAAGAAGGGGGTA 451
Query 316 AATCCG-GGTGGAAAATGAAGCCCTTTTTGGCT-CTCATGTGTACAGCT-CTTTTGATCT 372
||| || |||||||||||| || || ||| | ||||||||||||| | ||||||||||
Sbjct 452 AAT-CGTCGTGGAAAATGAAACCGATTGTGG-TGCTCATGTGTACAG-TACTTTTGATCT 508
Query 373 TTTGGTATAAGACCACAAATATTCAGTTTGAACAAACAGAGATAGAAGAAACAGATTATC 432
||||||||||||| ||||||||||||| |||||| |||||||||||||||||||||||||
Sbjct 509 TTTGGTATAAGACTACAAATATTCAGTATGAACAGACAGAGATAGAAGAAACAGATTATC 568
Query 433 CTTTTGACATGGCTAAGGAATCTGAAGCAGTTAACGATAAA-TTAAAAGGCTTGCCTCGT 491
| ||||| ||||| |||||||||||| | || | || ||| || |||||||||||| |
Sbjct 569 CATTTGAGATGGCAAAGGAATCTGAACCGGTCAGTGA-AAAGTTGAAAGGCTTGCCTTTT 627
Query 492 GGAATCATACAGTCTAGATCAGATCTT-GAATTAAAGCCTCTCTGGTCTAG-AGGTAGTC 549
|| ||||| || ||||||||||| || || |||||||| || ||||| || | |||||
Sbjct 628 GGTATCATGCAACCTAGATCAGAT-TTGGAGTTAAAGCCACTTTGGTCAAGTA-GTAGTT 685
Query 550 TGAGGTCAAAGGGTGTG-GAAATGACTAACCGTAACTTGTTGGCAATACCCGTAGGACTT 608
||||||||||| | | | ||| |||| |||||||||||||||||||| || |||||||||
Sbjct 686 TGAGGTCAAAGAGCG-GCGAATTGACCAACCGTAACTTGTTGGCAATGCCGGTAGGACTT 744
Query 609 AAGCAAAAGGGTAACGTCGACGCTCTTGTAAAGAAGTTTCTTCCCGCGAATTTCAC-GAT 667
|||||||||| ||| || || ||| ||||||||||||||||||| || |||||||| | |
Sbjct 745 AAGCAAAAGGATAATGTTGATGCTGTTGTAAAGAAGTTTCTTCCTGCAAATTTCACTG-T 803
Query 668 TGTTCT-TTTCCATTATGATGGAAATATGGATAAATGGTGGGATCTGGAGTGGAGTTCAA 726
|||| ||| |||||||||||||| |||||| ||||||||||||| |||||||| ||||
Sbjct 804 CATTCTATTT-CATTATGATGGAAACATGGATCAATGGTGGGATCTAGAGTGGAGCTCAA 862
Query 727 AATCCATACATATAGTTGCACAAAACCAGACTAAATGGTGGTTTGCAAAACGATTCCTCC 786
|| ||||||| || |||||||| |||||||| ||||||||||| || ||||| || ||||
Sbjct 863 AAGCCATACACATTGTTGCACATAACCAGACAAAATGGTGGTTCGCGAAACGTTTTCTCC 922
Query 787 ATCCGGATGTTGTATCCATTTATGATTATATTTTTCTTTGGGACGAGGATCTTGGAGTAG 846
|||| ||| |||| ||||| || |||||| ||||||||||||| || ||||||||||| |
Sbjct 923 ATCCTGATATTGTCTCCATCTACGATTATGTTTTTCTTTGGGATGAAGATCTTGGAGTGG 982
Query 847 AGAATTTCAATCCAG-AGAGATATTTGAAGATAGTTAAATCAGTGGGACTGGAGATATCT 905
|||||||||| || | | || || ||| |||||||||| ||| ||||||||||||||||
Sbjct 983 AGAATTTCAACCCGGAAAAG-TACCTGAGGATAGTTAAAACAGCGGGACTGGAGATATCT 1041
Query 906 CAACCGGCTTTGGA-CCACAACTCGACTGAAATACACCATAAAATCACTCTCCGTTCTAA 964
|||||||| ||| | ||| ||||| || ||| | ||||||| ||| || | || ||||
Sbjct 1042 CAACCGGCCTTGCACCCA-AACTCAACCGAAGTTCACCATAGAATTACAGTTCGGTCTAG 1100
Query 965 AAC-AAAGAAATTTCATAGGAGAGTTTAC-ATCAATAGAGGCCATA-AAAGATGTTCTAA 1021
||| ||| | |||||||||| |||||||| || | ||||||| ||| ||| ||||| ||
Sbjct 1101 AACGAAA-ATATTTCATAGGCGAGTTTACGAT-AGTAGAGGCAATATGAAG-TGTTCAAA 1157
Query 1022 TACTAGCT-CAGATCCTCCTTGCACCGGATTTGTTGAAGGAATGGCTCCGGTGTTTTCGA 1080
| |||| | || || || ||||||||||||||||||||||||||||| ||||||||||
Sbjct 1158 TGCTAG-TGAAGGGCCCCCATGCACCGGATTTGTTGAAGGAATGGCTCCAGTGTTTTCGA 1216
Query 1081 AAGCTGCTTGGCTTTGCACTTGGAATCTTATACAGAATGATTTGGTTCATGGATGGGGAA 1140
| |||| ||| |||||||||||||||| ||||| |||||| |||||||||| |||||||
Sbjct 1217 GATCTGCGTGGTTTTGCACTTGGAATCTAATACAAAATGATCTGGTTCATGGGTGGGGAA 1276
Query 1141 TGGATATGAAACTTGGGTACTGCGCACAGGGAGACCGAA-CGAA-AAACGTAGGGATTGT 1198
|||||||||||||||| ||||| || ||||| ||||| | | || ||| ||||| |||||
Sbjct 1277 TGGATATGAAACTTGGTTACTGTGCTCAGGGTGACCGTAGC-AAGAAA-GTAGGCATTGT 1334
Query 1199 GGATAGCGAGTATATCCTTC-ATCAAGGCATTCAAACTTTAGGTGAAAGTG-TT--CCTG 1254
|| || || |||||| ||| ||||||||||||||||| |||||| ||| | || || |
Sbjct 1335 CGACAGTGAATATATC-TTCCATCAAGGCATTCAAACTCTAGGTGGAAGCGGTTATCCCG 1393
Query 1255 AGAAGAAGAAGACGGCTCGTGATGTTG-G-GAC-CAGGAGACAAGGC-CATACAACTTTT 1310
| |||||||| | ||||| | || | | || | |||||| || | | | ||||||
Sbjct 1394 ATAAGAAGAACTCAGCTCGC-A-GTGGAGTGAATC-GGAGACGCGGTTC-TGCGACTTTT 1449
Query 1311 GATTCAAGAACCGAGATAAGGAGACAATCGACATGGGAGCTTCAAACTTTTAAAGAACGA 1370
||||||||||| |||||| |||||||||| || |||||||||||| |||||||||||||
Sbjct 1450 GATTCAAGAACAGAGATACGGAGACAATCAACGTGGGAGCTTCAAGCTTTTAAAGAACGG 1509
Query 1371 TGGAGCAAAGCGGTAGAAGAAGACATTAAGTGGATCGATCC-ATCGTCATC 1420
|||| | |||| || | |||||||| || ||| ||| || ||| |||||
Sbjct 1510 TGGAACCAAGCAGTTGCAGAAGACAAGAATTGGGCCGA-CCGATCTTCATC 1559
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 66162755565
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5