BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G11180.2
Length=1154
Score E
Sequences producing significant alignments: (Bits) Value
Ahg471253 jgi|Araly1|471253|fgenesh2_kg.1__1207__AT1G11180.1 1153 0.0
Ahg475195 jgi|Araly1|475195|fgenesh2_kg.2__325__AT1G61250.1 793 0.0
> Ahg471253 jgi|Araly1|471253|fgenesh2_kg.1__1207__AT1G11180.1
Length=941
Score = 1153 bits (624), Expect = 0.0
Identities = 703/741 (95%), Gaps = 6/741 (1%)
Strand=Plus/Plus
Query 265 ACAGGATTTGAAAAAGAAA-GAGAAGGAGCTCCAAGCCAAAGAAGCTGACCTAAGACGAC 323
||||||||||||||| ||| ||||||||||| ||||||||||||||||| |||||||||
Sbjct 204 ACAGGATTTGAAAAA-AAAGGAGAAGGAGCTTCAAGCCAAAGAAGCTGAGCTAAGACGAA 262
Query 324 GAGAGCAAGATCTTAAACGAAAACAGGATGCTGCTGCCCGAGCCGGAATTGTTATCGAGG 383
||||||| ||||| ||||| ||| ||||||||||||| ||||||||||||||||||||||
Sbjct 263 GAGAGCAGGATCTCAAACGGAAAGAGGATGCTGCTGCACGAGCCGGAATTGTTATCGAGG 322
Query 384 CAAAAAACTGGCCTA-CCTTCTTCCCCCTTATCCACCATGACATTGCAAATGAAATT-CT 441
| ||||||||||| | |||||||||| |||||||||||||||||||||||||||||| ||
Sbjct 323 CGAAAAACTGGCC-ACCCTTCTTCCCACTTATCCACCATGACATTGCAAATGAAATTCCT 381
Query 442 GGTTCGTCTCCAAAGGCTACAGTATATTGCATTTGCAACATATTTGGGGTTGGTTCTCGC 501
||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 382 -GTTCGGCTCCAAAGGCTACAGTATATTGCATTTGCAACATATTTGGGGTTGGTTCTTGC 440
Query 502 ACTTTTCTGGAATATCATCGCCGTTACTACCGCTTGGATCAAAGGAGAAGGAGTAACAAT 561
||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||
Sbjct 441 ACTTTTCTGGAATATCATCGCTGTTACTACTGCTTGGATCAAAGGAGAAGGAGTAACAAT 500
Query 562 TTGGCTTCTCGCCGTTATTTACTTCATATCGGGTGTTCCAGGAGGCTATGTGTTATGGTA 621
||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 501 TTGGCTTCTCGCCATTATTTACTTCATATCGGGTGTCCCAGGAGGCTATGTGTTATGGTA 560
Query 622 TCGGCCTCTCTACCGTGCCTTCAGAAGTGATAGTGCATTCAACTTTGGATGGTTTTTCTT 681
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 561 TCGGCCTCTCTACCGTGCCTTCAGAAGTGATAGTGCATTCAACTTTGGATGGTTTTTCTT 620
Query 682 GTTCTACATGCTCCACATACTTTTCTGCCTCTTTGCTGCAGTTGCTCCTCCTATTGTCTT 741
|||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||
Sbjct 621 GTTCTACATGCTCCACATACTTTTCTGCGTCTTTGCTGCAGTTGCTCCACCTATTGTCTT 680
Query 742 CAAAGGAAAATCACTTGCGGGCATATTACCTGCAATAGATGTGTTGAGCGCTCAGGCATT 801
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 681 CAAAGGAAAATCACTTGCGGGCATATTACCTGCAATAGATGTGTTGAGCGCTCAGGCATT 740
Query 802 GGTCGGGATCTTCTACTTCATTGGGTTTGGGTTATTCTGTCTTGAATCAGTGGTTAGCAT 861
||||||||||||||||||||| ||||||||||||||||| |||||||||||||| |||||
Sbjct 741 GGTCGGGATCTTCTACTTCATCGGGTTTGGGTTATTCTGCCTTGAATCAGTGGTCAGCAT 800
Query 862 CTGGGTTATACAGCAAGTATACATGTACTTCAGAGGAAGCGGAAAAGCGGATGATATGAG 921
||||||||| ||||||||||||||||||||| |||||||||| ||||||||||| |||||
Sbjct 801 CTGGGTTATTCAGCAAGTATACATGTACTTCCGAGGAAGCGGGAAAGCGGATGAGATGAG 860
Query 922 ACGGGATGCTGCAAGAGGAGCCATGAGAGCTGCCATATGAGGCAAATGTAAATCAATGAG 981
|| |||||||||||||||||||||||||||||||||||||| |||||| |||||||||
Sbjct 861 ACAGGATGCTGCAAGAGGAGCCATGAGAGCTGCCATATGAGAAAAATGTGAATCAATGAT 920
Query 982 TCTAGTCATCTCTTCTTAAGC 1002
| |||||||||||||| ||||
Sbjct 921 TGTAGTCATCTCTTCTGAAGC 941
Score = 285 bits (154), Expect = 5e-76
Identities = 197/216 (91%), Gaps = 9/216 (4%)
Strand=Plus/Plus
Query 14 GTTGTGAAATCGAGAGATAAGCTTTGGTAAACCATGGGTGGTCGTTACGATCGGAACACA 73
|||||||||||||||||||||||||||| |||||||| ||||||||||||||| ||| ||
Sbjct 1 GTTGTGAAATCGAGAGATAAGCTTTGGTTAACCATGGCTGGTCGTTACGATCGTAACCCA 60
Query 74 TTCGACGAACAAGACGAAGTCAATCCTTTTGCTAATCCTGGGAGTGTTCCTGCTGCTTCG 133
|||||||||||||| |||||||||||||||||||| |||||||||||||| |||||||||
Sbjct 61 TTCGACGAACAAGATGAAGTCAATCCTTTTGCTAACCCTGGGAGTGTTCCCGCTGCTTCG 120
Query 134 AATTCCAGACTATCGCCTTTGCCTCCCGAACCTGCTGGTTTTGGTTATGGTCGTACTGTT 193
||||||||| ||||||||||||||||||||||||||||||||||||||||| | ||
Sbjct 121 AATTCCAGATTATCGCCTTTGCCTCCCGAACCTGCTGGTTTTGGTTATGGT-G-AC---- 174
Query 194 GACATTCCTCTTGACAGACCAGGGTCTGGTGCACAG 229
| |||||||||||||||| ||||||||| |||||
Sbjct 175 -A--TTCCTCTTGACAGACCTGGGTCTGGTACACAG 207
> Ahg475195 jgi|Araly1|475195|fgenesh2_kg.2__325__AT1G61250.1
Length=1256
Score = 793 bits (429), Expect = 0.0
Identities = 608/694 (88%), Gaps = 14/694 (2%)
Strand=Plus/Plus
Query 265 ACAGGATTTGAAAAAGAAAGAGAAGGAGCTCCAAGCCAAAGAAGCTGACCTAAGACGACG 324
|||||||||||| |||||||||||||| |||||||||||||||||||| |||| ||||||
Sbjct 309 ACAGGATTTGAAGAAGAAAGAGAAGGAACTCCAAGCCAAAGAAGCTGAGCTAAAACGACG 368
Query 325 AGAGCAAGATCTTAAACGAAAACAGGATGCTGCTGCCCGAGCCGGAATTGTTATCGAGGC 384
|||||| || || ||||||||| | ||||||||||| ||||| ||||| |||||||| |
Sbjct 369 AGAGCAGGAACTCAAACGAAAAGAAGATGCTGCTGCACGAGCTGGAATCGTTATCGAAGT 428
Query 385 AAAAAACTGGCCTACC-TTCTTCCCCCTTATCCACCATGACATTGCAAATGAAATTCTGG 443
||||||||||| || |||||||| ||||||||||||||||| ||||| ||||||| |
Sbjct 429 GAAAAACTGGCC-GCCTTTCTTCCCGCTTATCCACCATGACATCGCAAACGAAATTCCAG 487
Query 444 TTCGTCTCCAAAGGCTACAGTATATTGCATTTGCAACATATTTGGGGTTGGTTC-TCGCA 502
||| ||||||||| ||||||||| || | || ||||| |||||||| ||||||| | |
Sbjct 488 TTCATCTCCAAAGACTACAGTATGTTACCTTCGCAACGTATTTGGGTTTGGTTCTTTG-T 546
Query 503 CTTTTCTGGAATATCATCGCCGTTACTACCGCTTGGATCAAAGGAGAAGGAGTAACAATT 562
||||||||||||||||||||||||||||| ||||||||||||||||||||||| || ||
Sbjct 547 CTTTTCTGGAATATCATCGCCGTTACTACAGCTTGGATCAAAGGAGAAGGAGTGACGATA 606
Query 563 TGGCTTCTCGCCGTTA-TTTACTTCATATCGGGTGTTCCAGGAGGCTATGTGTTATGGTA 621
|||||||| ||| ||| ||||||||||| | |||||||||||||||||||||||||||||
Sbjct 607 TGGCTTCTTGCC-TTAATTTACTTCATAGCTGGTGTTCCAGGAGGCTATGTGTTATGGTA 665
Query 622 TCGGCCTCTCTACCGTGCCTTCAGAAGTGATAGTGCATTCAACTTTGGATGGTTTTTCTT 681
|||||| ||||||||||||||||||| |||||||||||| | ||||||||||||||||||
Sbjct 666 TCGGCCACTCTACCGTGCCTTCAGAACTGATAGTGCATTGAGCTTTGGATGGTTTTTCTT 725
Query 682 GTTCTACATGCTCCACATA-CTTTTCTGCCTCTTTGCTGCAGTTGCTCCTCCTATTGTCT 740
|||||| ||||||||||| |||| |||| ||||||||||||||||||| ||| | ||||
Sbjct 726 GTTCTATATGCTCCACATTGCTTT-CTGCGTCTTTGCTGCAGTTGCTCCACCTGTCGTCT 784
Query 741 TCAAAGGAAAATCACTTGC-GGGCATATTACCTGCAATAGATGTGTTGAGCGCTCAGGCA 799
||||||||||||| ||||| ||| || ||||||||||||||||| || |||| ||| |||
Sbjct 785 TCAAAGGAAAATCTCTTGCTGGG-ATCTTACCTGCAATAGATGTCTTAAGCGGTCAAGCA 843
Query 800 -TTGGTCGGGATCTTCTACTTCATTGGGTTTGGGTTATTCTGTCTTGAATCAGTGGTTAG 858
||| | ||||| ||||||||||||||||||| ||| ||||| || ||||||||||||||
Sbjct 844 ATTGTT-GGGATATTCTACTTCATTGGGTTTGCGTTTTTCTGCCTCGAATCAGTGGTTAG 902
Query 859 CATCTGGGTTATACAGCAAGTATACATGTACTTCAGAGGAAGCGGAAAAGCG-GATGATA 917
|||||||||||| |||||||| || ||||||||| |||| ||||| ||| | ||| | |
Sbjct 903 CATCTGGGTTATTCAGCAAGTGTATATGTACTTCCGAGGCAGCGGGAAA-CAAGATCAAA 961
Query 918 TGAGACGGGATGCTGCAAGAGGAGCCATGAGAGC 951
|||||||||| || |||||||||||| |||||||
Sbjct 962 TGAGACGGGAAGCGGCAAGAGGAGCCTTGAGAGC 995
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 43040773293
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5