BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT1G11185.1 Length=526 Score E Sequences producing significant alignments: (Bits) Value Ahg910868 jgi|Araly1|910868|Al_scaffold_0001_1122 366 8e-101 > Ahg910868 jgi|Araly1|910868|Al_scaffold_0001_1122 Length=246 Score = 366 bits (198), Expect = 8e-101 Identities = 233/249 (94%), Gaps = 6/249 (2%) Strand=Plus/Plus Query 125 GGTGGAGATGGAACTAGAAAAGGTGGTAGAGAACACAGTAGCCGTCCGATCCCGAAGAGA 184 |||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||| Sbjct 3 GGTGGAGATGGAACAAGAAAAGGTGGTAGAGAACACATTAGCCGTCCGATCCCGAAGAGA 62 Query 185 GGGCAAGTCAAAGTTGGGATCTTGCTTGGTTTTGCTAATTCTTTTGCTTCCATCTTTGGC 244 ||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||| Sbjct 63 GGGCAAGTCAAAGTTGGGATCTTGCTTGGCTTTGCTAATTCCTTTGCTTCCATCTTTGGC 122 Query 245 TCAACGAGAAACTTCCATGGATCCTAAACTTAATCTTCTATCTTCTCATTTCCCACAGAA 304 || |||||||||||||||||||||||||| |||||| || ||| ||||||||||||||| Sbjct 123 TCCACGAGAAACTTCCATGGATCCTAAACCTAATCTGCTG-CTTTTCATTTCCCACAGAA 181 Query 305 ATATTTTCATTCACTTTTT-AGAATTTTCTGTGGTTTATTGGAGTGAGATAAGATTGGTG 363 ||||||||||| | ||||| |||||||||||||||||||||||||||||||| | |||| Sbjct 182 ATATTTTCATTTA-TTTTTCAGAATTTTCTGTGGTTTATTGGAGTGAGATAA--T-GGTG 237 Query 364 ATCTTGTAG 372 ||||||||| Sbjct 238 ATCTTGTAG 246 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 19154105678 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5