BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G11185.1
Length=526
Score E
Sequences producing significant alignments: (Bits) Value
Ahg910868 jgi|Araly1|910868|Al_scaffold_0001_1122 366 8e-101
> Ahg910868 jgi|Araly1|910868|Al_scaffold_0001_1122
Length=246
Score = 366 bits (198), Expect = 8e-101
Identities = 233/249 (94%), Gaps = 6/249 (2%)
Strand=Plus/Plus
Query 125 GGTGGAGATGGAACTAGAAAAGGTGGTAGAGAACACAGTAGCCGTCCGATCCCGAAGAGA 184
|||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 3 GGTGGAGATGGAACAAGAAAAGGTGGTAGAGAACACATTAGCCGTCCGATCCCGAAGAGA 62
Query 185 GGGCAAGTCAAAGTTGGGATCTTGCTTGGTTTTGCTAATTCTTTTGCTTCCATCTTTGGC 244
||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||
Sbjct 63 GGGCAAGTCAAAGTTGGGATCTTGCTTGGCTTTGCTAATTCCTTTGCTTCCATCTTTGGC 122
Query 245 TCAACGAGAAACTTCCATGGATCCTAAACTTAATCTTCTATCTTCTCATTTCCCACAGAA 304
|| |||||||||||||||||||||||||| |||||| || ||| |||||||||||||||
Sbjct 123 TCCACGAGAAACTTCCATGGATCCTAAACCTAATCTGCTG-CTTTTCATTTCCCACAGAA 181
Query 305 ATATTTTCATTCACTTTTT-AGAATTTTCTGTGGTTTATTGGAGTGAGATAAGATTGGTG 363
||||||||||| | ||||| |||||||||||||||||||||||||||||||| | ||||
Sbjct 182 ATATTTTCATTTA-TTTTTCAGAATTTTCTGTGGTTTATTGGAGTGAGATAA--T-GGTG 237
Query 364 ATCTTGTAG 372
|||||||||
Sbjct 238 ATCTTGTAG 246
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 19154105678
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5