BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G11190.1
Length=1274
Score E
Sequences producing significant alignments: (Bits) Value
Ahg471254 jgi|Araly1|471254|fgenesh2_kg.1__1208__AT1G11190.1 1709 0.0
> Ahg471254 jgi|Araly1|471254|fgenesh2_kg.1__1208__AT1G11190.1
Length=1006
Score = 1709 bits (925), Expect = 0.0
Identities = 979/1006 (97%), Gaps = 0/1006 (0%)
Strand=Plus/Plus
Query 54 TATCATTATATAAGTTTCAAACTTTGAAGATATGGCATCGGCTTTTAGATCATCCACGAG 113
|||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1 TATCATTATAAAAGTTTCAAAGTTTGAAGATATGGCATCGGCTTTTAGATCATCCACGAG 60
Query 114 GTTGATTCTTGTATTAGGTATACTGATTTTGTGTTCGGTTTCTTCTGTCCGAAGCTGGAG 173
|||||||| ||||||||||||| ||||||||||||||||||||||||||| |||||||||
Sbjct 61 GTTGATTCCTGTATTAGGTATATTGATTTTGTGTTCGGTTTCTTCTGTCCAAAGCTGGAG 120
Query 174 CAAAGAAGGTCATATTCTTACTTGTAGAATTGCTCAGAATCTTTTAGAAGCCGGACCAGC 233
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||
Sbjct 121 CAAAGAAGGTCATATTCTTACATGTAGAATTGCTCAGAATCTTTTAGAAGCCGGACCGGC 180
Query 234 ACATGTAGTAGAGAATCTGTTACCGGATTACGTGAAAGGAGATTTATCAGCATTGTGTGT 293
||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 181 ACATGTAGTTGAAAATCTGTTACCGGATTACGTGAAAGGAGATTTATCAGCATTGTGTGT 240
Query 294 GTGGCCTGACCAGATCCGACATTGGTACAAGTATCGTTGGACCAGCCATCTCCATTACAT 353
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 241 GTGGCCTGACCAGATCCGACATTGGTACAAGTACCGTTGGACCAGCCATCTCCATTACAT 300
Query 354 CGACACTCCCGACCAAGCCTGCTCTTACGAATACTCTAGGGATTGTCATGATCAACATGG 413
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 301 CGACACTCCCGACCAAGCCTGCTCTTACGAATACTCCAGGGATTGTCATGATCAACATGG 360
Query 414 ATTGAAGGATATGTGTGTGGATGGAGCAATCCAGAATTTCACGTCTCAGCTTCAGCATTA 473
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 361 ATTGAAGGATATGTGTGTGGATGGAGCAATCCAGAATTTCACGTCTCAACTTCAGCATTA 420
Query 474 CGGTGAAGGAACATCTGATCGTAGATATAACATGACCGAAGCCCTTTTGTTCTTGTCTCA 533
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 421 CGGTGAAGGAACATCTGATCGTAGATATAACATGACCGAAGCCCTTTTGTTCTTGTCTCA 480
Query 534 TTTCATGGGAGATATTCATCAGCCGATGCATGTGGGATTCACAAGTGATGAAGGAGGAAA 593
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 481 TTTCATGGGAGATATTCATCAGCCGATGCATGTGGGATTCACAAGTGATGAAGGAGGAAA 540
Query 594 CACGATAGATTTACGTTGGTACAAACACAAATCCAATCTACATCATGTATGGGATAGAGA 653
||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||
Sbjct 541 CACGATAGATTTACGTTGGTACAAACACAAATCAAATCTACATCATGTATGGGACAGAGA 600
Query 654 GATCATTCTCACGGCTCTAAAAGAAAACTACGACAAGAACTTGGATCTTCTCCAAGAGGA 713
|||||||||||| ||||| ||||||| |||||||||||||||||||||||||||||||||
Sbjct 601 GATCATTCTCACCGCTCTTAAAGAAAGCTACGACAAGAACTTGGATCTTCTCCAAGAGGA 660
Query 714 TCTTGAGAAGAACATCACCAATGGATTATGGCACGACGATCTATCTTCGTGGACAGAATG 773
|||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||
Sbjct 661 TCTTGAGAAGAACATCACCACTGGATTATGGCACGACGATTTATCTTCGTGGACAGAATG 720
Query 774 CAACGATCTTATCGCTTGTCCACACAAGTATGCTTCAGAGAGTATAAAGTTAGCTTGTAA 833
||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||
Sbjct 721 CAACGATCTTATCGCTTGTCCTCACAAGTATGCTTCGGAGAGTATAAAGTTAGCTTGTAA 780
Query 834 ATGGGGATACAAAGGCGTCAAGTCTGGTGAAACGTTATCAGAAGAATATTTCAATACAAG 893
|||||| ||||||||||| ||||||||||||||||||||||| |||||||||||||||||
Sbjct 781 ATGGGGCTACAAAGGCGTGAAGTCTGGTGAAACGTTATCAGAGGAATATTTCAATACAAG 840
Query 894 GTTGCCAATAGTGATGAAGAGAATAGTTCAGGGAGGAGTTAGACTAGCCATGATACTAAA 953
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 841 GTTGCCAATAGTGATGAAAAGAATAGTTCAGGGAGGAGTTAGACTAGCCATGATACTAAA 900
Query 954 CCGGGTTTTTAGTGACGATCATGCTATTGCTGGTGTTGCTGCCACTTGAACCAAACCCGA 1013
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 901 CCGGGTTTTTAGTGACGATCATGCTATTGCTGGTGTTGCTGCCACTTGAACCAAACCGGA 960
Query 1014 CATACCGGGGCATCAAAGCATTTGATTAAGAGATTATTTGATACAT 1059
||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 961 CATACCGGGCCATCAAAGCATTTGATTAAGAGATTATTTGATACAT 1006
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 47615523333
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5