BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G11200.1
Length=1153
Score E
Sequences producing significant alignments: (Bits) Value
Ahg471255 jgi|Araly1|471255|fgenesh2_kg.1__1209__AT1G11200.1 1411 0.0
> Ahg471255 jgi|Araly1|471255|fgenesh2_kg.1__1209__AT1G11200.1
Length=962
Score = 1411 bits (764), Expect = 0.0
Identities = 912/981 (93%), Gaps = 20/981 (2%)
Strand=Plus/Plus
Query 81 AGAATGATTGACTTATCTACTTTATCTCCTGCGGAGATCACGGTGATGGGATCCGTGTTC 140
||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||
Sbjct 2 AGAATGATTGACTTATCTACTCTATCTCCTGCGGAGATCACGGTGATGGGATCTGTGTTC 61
Query 141 TGTGTTTTGCTCTCGATGCACTTCACTATGCAGCTTGTATCCCAGCATCTGTTTTACTGG 200
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 62 TGTGTTTTGCTCTCGATGCACTTCACTATGCAGCTCGTATCCCAGCATCTGTTTTACTGG 121
Query 201 AAGAAACCTAATGAACAGAGAGCCATTCTTATTATTGTGCTTATGGCTCCTGTTTACGCT 260
||||| ||||| ||||||||||||||||| |||||||| |||||||||||||||||||||
Sbjct 122 AAGAACCCTAAAGAACAGAGAGCCATTCTAATTATTGTACTTATGGCTCCTGTTTACGCT 181
Query 261 ATCAACTCTTTTGTGGGCTTGTTAGATGCTAAAGGAAGCAAACCTTTCTTCATGTTTCTA 320
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 182 ATCAACTCTTTTGTGGGCTTGTTAGATGCTAAGGGAAGCAAACCTTTCTTCATGTTTCTA 241
Query 321 GACGCCGTTAAGGAATGCTATGAGGCACTTGTCATTGCTAAATTCTTGGCTTTGATGTAT 380
|||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 242 GACGCCGTTAAGGATTGCTATGAGGCACTCGTCATTGCTAAATTCTTGGCTTTGATGTAT 301
Query 381 AGTTATGTAAACATATCGATGAGTGCACGGATTATCCCAGATGAATTCAAAGGGCGAGAA 440
||||| ||||||||||||||||| ||| ||||||||||||||||| |||||||| |||||
Sbjct 302 AGTTACGTAAACATATCGATGAGCGCAAGGATTATCCCAGATGAAATCAAAGGGAGAGAA 361
Query 441 ATCCACCATTCGTTTCCAATGACTCTTTTCGTGCCCCGTACCACACATCTGGATTACCTC 500
||||||||||||||||||||||||||||| |||||||| ||||| | |||||||||||||
Sbjct 362 ATCCACCATTCGTTTCCAATGACTCTTTTTGTGCCCCGCACCACGCGTCTGGATTACCTC 421
Query 501 ACACTGAAACAGCTCAAGCAATGGACATGGCAGTTTTGTATTATCCGCCCAGTGTGTTCC 560
||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||
Sbjct 422 ACACTGAAACAGCTCAAGCAATGGACACGGCAATTTTGTATTATCCGCCCAGTGTGTTCC 481
Query 561 ATCTTGATGATAACATTACAGATCCTTGGGATTTATCCAGTTTGGTTGAGCTGGATCTTC 620
||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||
Sbjct 482 ATCTTGATGATAACACTACAGATCCTTGGGATTTATCCAGCGTGGTTGAGCTGGATCTTC 541
Query 621 ACTGCTATTCTCAATGTTTCGGTTTCCCTGGCGTTGTATTCTTTGGTGAAATTCTACCAT 680
|| | |||||| || || ||||||||||||||||||||||||||||||||||||||||||
Sbjct 542 ACCGTTATTCTAAACGTGTCGGTTTCCCTGGCGTTGTATTCTTTGGTGAAATTCTACCAT 601
Query 681 GTTTTTGCTAAAGAGTTGGAGCCTCATAAGCCTCTTACAAAGTTCATGTGCGTCAAAGGG 740
|||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 602 GTTTTTGCCAAAGAGTTGGAGCCTCATAAGCCGCTTACAAAGTTCATGTGCGTCAAAGGG 661
Query 741 ATAGTGTTCTTCTGCTTTTGGCAGGGAATAGTCCTGAAGATATTGGTGGGATTGGGATTA 800
||||| |||||||||||||||||||||||||| ||| |||||||||||||||||||||||
Sbjct 662 ATAGTCTTCTTCTGCTTTTGGCAGGGAATAGTGCTGGAGATATTGGTGGGATTGGGATTA 721
Query 801 ATTAAGTCGCATCATTTCTGGTTGGAGGTGGATCAGCTTGAAGAAGCTCTGCAAAATGTG 860
|| ||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||
Sbjct 722 ATAAAGTCGCATCATTTCTGGTTGGAGGTGGATCAGCTTGAAGAAGCTCTACAAAACGTG 781
Query 861 CTTGTATGTCTTGAGATGATCGTCTTCTCCATCATTCAACAGTACGCTTTTCACGTTGCT 920
||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 782 CTTGTGTGTCTTGAGATGATCGTCTTCTCCATCATTCAACAATACGCTTTTCACGTTGCG 841
Query 921 CCTTACAGTGGAGAAACTGAAGCTAAGATGAGATTCAACAAGAGAGATTGATTCTGAGAG 980
||||||||||||||||| ||||||||||||||| | | ||||||||||| |||||
Sbjct 842 CCTTACAGTGGAGAAACCGAAGCTAAGATGAGAATGAGCAAGAGAGATTAATTCT----- 896
Query 981 TGCAGACTCTTTCCAAATTTAGACCAGAGAAGATCTTATCTTCTTCtttttttGGTTAAT 1040
| | || |||| ||||||||||||| | || | ||||||||||||||||||
Sbjct 897 --C----T-TT-CCAAGTTTAGACCAGAGA---T-TT-TG--CTTCTTTTTTTGGTTAAT 941
Query 1041 GTGAATGTTAATGTTGTTATG 1061
|||||||||| || |||||||
Sbjct 942 GTGAATGTTATTGATGTTATG 962
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 43002650376
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5