BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G11210.1
Length=1213
Score E
Sequences producing significant alignments: (Bits) Value
Ahg910871 jgi|Araly1|910871|Al_scaffold_0001_1125 1386 0.0
Ahg924903 jgi|Araly1|924903|scaffold_200464.1 87.9 2e-16
> Ahg910871 jgi|Araly1|910871|Al_scaffold_0001_1125
Length=933
Score = 1386 bits (750), Expect = 0.0
Identities = 876/936 (94%), Gaps = 12/936 (1%)
Strand=Plus/Plus
Query 88 ATGGCGTCGTGGATGAAAGCGGTGCTAATCTCTACTGGCGTCGTAGCCACGGCTATGCAT 147
|||||||| |||||||| |||||||||||||||||||| ||||||||||||||||||||
Sbjct 1 ATGGCGTCATGGATGAAGGCGGTGCTAATCTCTACTGGTTTCGTAGCCACGGCTATGCAT 60
Query 148 CTAAAGGTTATTGTTCCTGTGGCTATGGATTTCTCACAAAATCCGATTATTTTGAGCTCT 207
|||||||||||||||||||||||| | |||||||||| ||||||||||||||||||||
Sbjct 61 CTAAAGGTTATTGTTCCTGTGGCTTTAGATTTCTCACTCGATCCGATTATTTTGAGCTCT 120
Query 208 TTCCTCACGTGGCTGAAACCGCCGTATCTTTACGTCATCACTAACGTCATCATCATCGTT 267
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 121 TTCCTCACGTGGCTGAAACCGCCGTATCTTTACGTCATCACCAACGTCATCATCATCGTT 180
Query 268 GTCGGAGTTTCCTACCGGATTACTACTGTCTCCAGCCACGTCGACGGCAAAGACTATGAG 327
|||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 181 ATCGGAGTTTCTTACCGGATTACTACTGTCTCCAGCCACGTCGACGGCAAAGACTACGAG 240
Query 328 GCTTCTTACAGTGGCGACAATAAGTTTCAGACTGATCATCAGCAGATCGTCCAA-GAAGC 386
||||||||||||||||||||||||||||||||||||||||||||||||||| || | | |
Sbjct 241 GCTTCTTACAGTGGCGACAATAAGTTTCAGACTGATCATCAGCAGATCGTCGAACG-ACC 299
Query 387 TCCTCTAAGGCGA-CGAACGGAGACGAAAGATGCGGATTTTGGTTTCATCGGCAAAGTTT 445
| |||| | | | || |||||||||||||||||||||||||||||||||||||||||||
Sbjct 300 TACTCTCCGAC-AGCGGACGGAGACGAAAGATGCGGATTTTGGTTTCATCGGCAAAGTTT 358
Query 446 TGCAGATCGTTAAGGAGCCGGAGGTTGTGTATGAAGAGAAGGAGAGGCCGGCGACGGTAG 505
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 359 TGCAGATCGTTAAGGAGCCGGAGGTTGTGTATGAAGAGAAGGAGAGGCCGGCGACGGTAG 418
Query 506 AGGAGGAGG---AGAAGAAGTGTATAATTGTGGTGAGCAAATCGGAAAATCAACCTCCGG 562
||| ||||| ||||||||||| || | |||||||||||||||||||||||||||||||
Sbjct 419 AGGGGGAGGTGGAGAAGAAGTGTTTAGTGGTGGTGAGCAAATCGGAAAATCAACCTCCGG 478
Query 563 TGGAGAAGCCTCTTGTTACGGCTAGGATCGGCCAAAAGAAACCGGTGGTTAAGACTACAC 622
||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||| |
Sbjct 479 TGGAGAAGCCTCTAGTTACGGCTAGAATCGGCCAAAAGAAACCGGTGGTTAAGACTACTC 538
Query 623 CAGCAGAAAGGAATTCTATGAGAGCGTTGAGAGTTGCGAAACCGAAACGTAACGAGACGT 682
|||||||||||||||| ||||||||||| ||||| ||||| ||||| || |||||||| |
Sbjct 539 CAGCAGAAAGGAATTCCATGAGAGCGTTAAGAGTGGCGAAGCCGAAGCGGAACGAGACAT 598
Query 683 TAGAGAATACGTGGAAGATGATTATGGAAGGCAACAAGTCAACGCTTCCGTTGACCAGTT 742
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 599 TAGAGAATACGTGGAAGATGATTATGGAAGGCAACAAGTCAACGCTTCCGTTGACCAGTT 658
Query 743 ATTACAAGAGACCCGACACGTTCGGACTTGG---CGAAGAGACAAAACAATCAGGTGTTT 799
||||||||||||| ||||||||||||||||| |||||||||||||| ||| |||| ||
Sbjct 659 ATTACAAGAGACCTGACACGTTCGGACTTGGTGGCGAAGAGACAAAACTATCTGGTGGTT 718
Query 800 TGAAGAAATCGGAGACGTTTAGTGACAGAACTAACT-GTTACCAGTCTCTGCCGCCGCCA 858
|||||||||||||| ||||||||||||||||||| | || |||||||||||||| |||||
Sbjct 719 TGAAGAAATCGGAGTCGTTTAGTGACAGAACTAA-TAGTGACCAGTCTCTGCCGTCGCCA 777
Query 859 CCTCCGCCGCTAGTGAAGGTGAAGAAGGTGAAAGTGTCACGGAGTAGGGATGAGCTTAAC 918
|| ||||||||||||||||||||||||||||||||| | |||||||||||||||||||||
Sbjct 778 CCGCCGCCGCTAGTGAAGGTGAAGAAGGTGAAAGTGACTCGGAGTAGGGATGAGCTTAAC 837
Query 919 CGGAAAGTAGAAGCGTTTATaaaaaaaTGCAACGACGAGAGGTTCGCGTCGATGAAACTG 978
|||| ||||||||||||||||||||||||||||||||||||||||||||| |||| ||||
Sbjct 838 CGGAGAGTAGAAGCGTTTATAAAAAAATGCAACGACGAGAGGTTCGCGTCTATGAGACTG 897
Query 979 GACAACGAAGTGGCTCGTCATGGTCTTTCTTATTAA 1014
||||||||||||||||||||||||||||| ||||||
Sbjct 898 GACAACGAAGTGGCTCGTCATGGTCTTTCGTATTAA 933
> Ahg924903 jgi|Araly1|924903|scaffold_200464.1
Length=1106
Score = 87.9 bits (47), Expect = 2e-16
Identities = 75/87 (86%), Gaps = 7/87 (8%)
Strand=Plus/Plus
Query 643 AGAGCGTTGAGAGTTG-CGAAACCGAA-ACGTAACGAGACGTTAGAGAATACGTGGAAGA 700
||||| ||||||| || |||| ||||| | | |||||||| |||||||||||||||||||
Sbjct 711 AGAGCTTTGAGAG-TGACGAAGCCGAAGAAG-AACGAGACATTAGAGAATACGTGGAAGA 768
Query 701 TGATTATGGAAGGCAACAAGTCAACGC 727
||||||||||||| || ||||||||
Sbjct 769 TGATTATGGAAGGGAA---GTCAACGC 792
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 45290025396
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5