BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G11220.1
Length=1093
Score E
Sequences producing significant alignments: (Bits) Value
Ahg471257 jgi|Araly1|471257|fgenesh2_kg.1__1211__AT1G11220.1 1262 0.0
> Ahg471257 jgi|Araly1|471257|fgenesh2_kg.1__1211__AT1G11220.1
Length=996
Score = 1262 bits (683), Expect = 0.0
Identities = 889/986 (90%), Gaps = 24/986 (2%)
Strand=Plus/Plus
Query 1 ATGGTTTCGTCTATGATTTCGATCAAGGCGGCGCTAATCACCGCCGGAATCGTGGCCGTG 60
||||||||||| ||| ||||||||||| ||||||||||| || ||||||||| ||| ||
Sbjct 1 ATGGTTTCGTCAATGGTTTCGATCAAGACGGCGCTAATCTCCACCGGAATCGCCGCCTTG 60
Query 61 TCTCTGTTTCTGAAGTCCTCTGTTCCTATCGCAGTAGACTTCTCTGTATCACGATTCCCG 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 TCTCTGTTTCTGAAGTCCTCTGTTCCTATCGCAGTAGACTTCTCTGTATCACGATTCCCG 120
Query 121 ATCTTTTGGAGCTCCTTTCTCTCGTGGCTGAAACCGCCGTATCTTTTCGTCGCCATCAAC 180
||||||||||| ||||||||||||||||||||||||||||| || || |||| |||||||
Sbjct 121 ATCTTTTGGAGTTCCTTTCTCTCGTGGCTGAAACCGCCGTACCTCTTAGTCGTCATCAAC 180
Query 181 GTCATAATCACCATTATCATGGCTTCTTCCAAGTTTTATCAGAGCGTTGGAGAGCAAGAC 240
||||||||||| ||||| | || |||||||||| |||||||||| |||| || |||||
Sbjct 181 GTCATAATCACTATTATTGTAGCGTCTTCCAAGTATTATCAGAGCATTGGTGACCAAGAT 240
Query 241 GGTGAAGACGACGAGATTTTACTCGGTGGCGAATATACGATTCCGAATGTCATCACCCAA 300
||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||
Sbjct 241 GGTGAAGACGACGAGATGATACTCGGTGGCGAATATACGATTCCGAATGTCATCAACCAA 300
Query 301 GCTCCTCCG---CGAC--G--GT--TGG-T-T-GATCTGGACGCAGATTTTGATTTTGTG 348
||||||||| |||| | || || | | ||||||||||| ||||| ||||||| |
Sbjct 301 GCTCCTCCGCAACGACTGGAAGTGACGGATGTGGATCTGGACGCTGATTTCGATTTTGCG 360
Query 349 GCGACGGTTCAGTCGCCG---ATCCTCGTTGCGGAGGTGGAGATATTGGAGGTCGTGTTT 405
||||| ||| || ||| |||||||||||||||||| ||| || |||||| |||| |
Sbjct 361 GCGACAATTCCTTCTCCGATAATCCTCGTTGCGGAGGTGAAGAGATCGGAGGTTGTGTAT 420
Query 406 GAAGAGAAGGA-GATGGCGATTTCAGGACAGACCAACGGTGGAGATGAGTTTGCGGTGAT 464
|||||||||| || || | ||||||||| || |||||||||||||||||||||||| |
Sbjct 421 AAAGAGAAGGAGGA-GGAGGTTTCAGGACTGATCAACGGTGGAGATGAGTTTGCGGTTTT 479
Query 465 GAGATCAGAGTTGAATCAGCCGATAATGG-AGGAATCCGAGAATCTGCCTCCGGCTGAGA 523
|||||||| ||||||||| ||| || ||| ||| || |||||||| |||||||||||||
Sbjct 480 GAGATCAGCGTTGAATCAACCGTTATTGGAAGG-ATTGGAGAATCTCCCTCCGGCTGAGA 538
Query 524 AACCACTGGTTTCGGCTAGATCCGGCCACCGGAAACCGATCAAAGCGAGTTCAAAAGGCG 583
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 539 AACCACTGGTTTCGGCTAGATCCGGCCACCGGAAACCGGTCAAAGCGAGTTCAAAAGGCG 598
Query 584 TTAATAGAAAAAAGAAGGCGTTGAAAGTGGTGAAACCGAACCGGCACGAGACACTGGAGA 643
|||| || |||| |||||||||| ||||||||||||||| |||||||||||||||||||
Sbjct 599 TTAACAG--AAAA-AAGGCGTTGAGAGTGGTGAAACCGAAGCGGCACGAGACACTGGAGA 655
Query 644 ACACGTGGAACATGATAACTGAGGAGGGAAAATCAACGCCGTTGACTTGTCATTACCGGA 703
|||||||||| |||||||| |||||||||||||| | |||||||||| ||||||||||||
Sbjct 656 ACACGTGGAATATGATAACGGAGGAGGGAAAATCTATGCCGTTGACTAGTCATTACCGGA 715
Query 704 AAACCAGTATGTCTGGACTTAACGCCGGCGGCGATGTAAAACCTGTCTTGAGGAAAGCGG 763
||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||| |
Sbjct 716 AAACCAGTATGTCCGGACTTGACGCCGGCGGCGATGTAAAACCTGTCTTGAGGAAAGCAG 775
Query 764 AGACGTTCAGGGACGTGACTAATTATCGACAGTCGTCTCCGACGGTGACGTCACCGGTGA 823
|||| |||||||| ||||||||||||||||| |||||||||||||||||||| |||||||
Sbjct 776 AGACTTTCAGGGATGTGACTAATTATCGACACTCGTCTCCGACGGTGACGTCGCCGGTGA 835
Query 824 AGATGAAGAAGGAGATGTCGCCGAGTAGGGAGGAGCTGAATCGAAGAGTAGAAGCGTTTA 883
|||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||
Sbjct 836 AGATGAAGAAGGAGATGTCGCCGAGTAGGGAGGAGCTGAATCAAAGAGTGGAAGCGTTTA 895
Query 884 TCAAGAAGTGTAAGGAAGAGAGATTGGAGTCGCTAAAATTGGAGAAATAA-GTGGCTTAA 942
||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||
Sbjct 896 TCAAGAAGTGTAAGGAAGAGAGATTGGAGTCGCTAAAATTGGAGAAA-AACGTGGCTTAA 954
Query 943 TTAAACACGAGattaattagcttttt 968
||||||||||||||||||| ||||||
Sbjct 955 TTAAACACGAGATTAATTAACTTTTT 980
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 40715275356
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5