BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT1G11240.1

Length=867
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg471258 jgi|Araly1|471258|fgenesh2_kg.1__1212__AT1G11240.1        1026    0.0  


> Ahg471258 jgi|Araly1|471258|fgenesh2_kg.1__1212__AT1G11240.1
Length=663

 Score = 1026 bits (555),  Expect = 0.0
 Identities = 627/663 (95%), Gaps = 0/663 (0%)
 Strand=Plus/Plus

Query  37   TTTTGACCTGAACCGCTTCGTTTCCGATCGGAGGAAGTATCTGGTGATGACGGGAGGCTT  96
            |||||||||||  ||||||||||||||||||||||||| ||||| ||||| || ||||||
Sbjct  1    TTTTGACCTGAGTCGCTTCGTTTCCGATCGGAGGAAGTCTCTGGCGATGAAGGAAGGCTT  60

Query  97   GCATAATGAGGAGGCGGGTTCACTGGCTACGCCGACTAGTGCTAGGCACATTGGGAAGAG  156
            | |||||||||||||||||||||||||| ||||||| || |||||||| |||||||||||
Sbjct  61   GGATAATGAGGAGGCGGGTTCACTGGCTCCGCCGACCAGCGCTAGGCATATTGGGAAGAG  120

Query  157  AGCTCGCAAGAACAAAAGCCTCACCGTCTCTTTTGACGAGAAAGATCTCAAGGATTTTGT  216
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  121  AGCTCGCAAGAACAAAAGCCTCACCGTCTCTTTTGACGAGAAAGATCTCAAGGATTTTGT  180

Query  217  GACTGGTTTTCACaagaggaagaagaaaagaagaaaggaagctcagaagcagcaggagga  276
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  181  GACTGGTTTTCACAAGAGGAAGAAGAAAAGAAGAAAGGAAGCTCAGAAGCAGCAGGAGGA  240

Query  277  agcTTTTAGGCGGAAACGAATCGAGGCCCGTAAGAATAGGAAATTGGAAGAGCTAATGGT  336
            |||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct  241  AGCTTTGAGGCGGAAACGTATCGAGGCCCGTAAGAATAGGAAATTGGAAGAGCTAATGGT  300

Query  337  TGCTGGTAATGGCGAGGATAATGAAGATGGGGAAGCTGAAGATGAAGTGGATGCAGAGGA  396
            ||||||| ||||||| ||||||||||||||||||||||||||||||| ||||||||||||
Sbjct  301  TGCTGGTCATGGCGACGATAATGAAGATGGGGAAGCTGAAGATGAAGAGGATGCAGAGGA  360

Query  397  TGAAGAAGCAGAGCCTGATGCTTCAACATCTGCCACGACGATGTATGATACAGGCGAGTT  456
             ||||||||||| |||||||||||||| |||| ||||||||||||||||||||||||| |
Sbjct  361  CGAAGAAGCAGAACCTGATGCTTCAACGTCTGGCACGACGATGTATGATACAGGCGAGCT  420

Query  457  GAAAGTAACTGTGACAACAAGTGAGATATCTCGTGAAGAGGAAGAGCCTATTCGCAAGGA  516
            ||||||||||||||||||||| | ||||||| ||||||||||||||||||||||||||||
Sbjct  421  GAAAGTAACTGTGACAACAAGCGCGATATCTTGTGAAGAGGAAGAGCCTATTCGCAAGGA  480

Query  517  GAAGACTCAATCAACAGAATCAGGTTCCACGGCCAAAGCTTCCACAAAGCAGCCTGTGCC  576
             ||||| || ||||||||||| ||||||||||||||||| ||||||||||||||||||||
Sbjct  481  CAAGACCCAGTCAACAGAATCGGGTTCCACGGCCAAAGCCTCCACAAAGCAGCCTGTGCC  540

Query  577  TGTGAGGAAAACCAAACCCATGAAACAGAGCAGGAGACGGTCAACCACCAAAACTATGAA  636
            ||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||
Sbjct  541  TGTGAGGAAAACCAAACCCATGAAACAGAGCAGGAAACGGTCAAGCACCAAAACTATGAA  600

Query  637  GAAAAGGGATAAGAAGAAACAAGCAAGAGGGATCAAGACTTCGCGATAGGAGTAGAAATG  696
            ||||||||||||||||||||||||||||||||| |||||| |||| ||||| ||||||| 
Sbjct  601  GAAAAGGGATAAGAAGAAACAAGCAAGAGGGATAAAGACTCCGCGGTAGGAATAGAAATT  660

Query  697  TCT  699
            |||
Sbjct  661  TCT  663



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 32099496114


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5