BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G11250.1
Length=897
Score E
Sequences producing significant alignments: (Bits) Value
Ahg312165 jgi|Araly1|312165|fgenesh1_pm.C_scaffold_1000945 1469 0.0
Ahg315228 jgi|Araly1|315228|fgenesh1_pm.C_scaffold_2000261 773 0.0
> Ahg312165 jgi|Araly1|312165|fgenesh1_pm.C_scaffold_1000945
Length=900
Score = 1469 bits (795), Expect = 0.0
Identities = 861/894 (96%), Gaps = 0/894 (0%)
Strand=Plus/Plus
Query 1 ATGAACGATTTATTCTCTAATTCATTCAAGAAGAACCAGGCTCAACTGGGGGATGTTGAG 60
|||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||
Sbjct 1 ATGAACGATTTATTCTCTAATTCATTCAAGAAGAACCAGGCTCAACTGCGCGATGTTGAG 60
Query 61 GCAGGTCAAGAAACGATGAACCTCGATAAATTCTTCGAGGATGTCGAGAATGTGAAGGAC 120
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 61 GCAGGTCAAGAAACGATGAACCTCGACAAATTCTTCGAGGATGTCGAGAATGTGAAGGAC 120
Query 121 GACATGAAAGGAGTCGAGGCTCTTTATAAGAAGCTTCAAGACTCAAACGAGGAGTGCAAG 180
|||||||||||||||||| ||||||||||||||||||||||||| || || |||||||||
Sbjct 121 GACATGAAAGGAGTCGAGACTCTTTATAAGAAGCTTCAAGACTCGAATGAAGAGTGCAAG 180
Query 181 ACGGTTCACAATGCCAAGAAGGTTAAAGAGCTACGAGCTAAGATGGATGGAGACGTAGCA 240
|||||||||||||||||||| || |||||||||||||||||||||||||| ||||||| |
Sbjct 181 ACGGTTCACAATGCCAAGAAAGTAAAAGAGCTACGAGCTAAGATGGATGGGGACGTAGGA 240
Query 241 ATGGTCCTTAAGAGGGTTAAAATCATCAAGCAGAAGCTCGAAGCCTTAGAGAAAGCGAAT 300
|||||||| || |||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 241 ATGGTCCTGAAAAGGGTTAAAATCATTAAGCAGAAGCTCGAAGCCTTAGAGAAAGCGAAT 300
Query 301 GCTAATAGCCGTAATGTCCCTGGTTGTGGGCCTGGTTCGTCTACGGATAGGACTCGATCT 360
|||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||
Sbjct 301 GCTAATAGCCGTAATGTCCCGGGTTGTGGGCCCGGTTCGTCTACGGATAGGACTCGATCT 360
Query 361 TCTGTGGTTAGCGGTCTCGGGAAGAAGCTCAAAGACTTGATGGATAGTTTTCAAGGTCTA 420
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 361 TCTGTGGTTAGCGGTCTCGGGAAGAAGCTCAAAGACTTGATGGATAGTTTCCAAGGTCTG 420
Query 421 CGTGCTCGTATGAACAATGAGTATAAGGAAACCGTAGAGCGCAGGTATTTCACAATAACA 480
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 421 CGTGCTCGTATGAACAATGAGTATAAGGAAACCGTAGAGCGCAGGTACTTCACAATAACA 480
Query 481 GGAGAAAAAGCAGACGAGCAAACAATCGATAACTTGATAGCGAGCGGTGAGAGCGAGAAT 540
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 481 GGAGAAAAAGCAGACGAGCAAACAATCGATAACTTGATAGCAAGCGGTGAGAGCGAGAAT 540
Query 541 TTTCTCCAAAAAGCGATTCAAGAGCAAGGAAGAGGTCAAATCCTAGACACGATATCTGAG 600
|| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 541 TTCCTCCAGAAAGCGATTCAAGAGCAAGGAAGAGGTCAAATCCTAGACACGATATCTGAG 600
Query 601 ATCCAGGAGAGACATGATGCAGTGAAGGAGATAGAGAAGAATCTACTGGAGCTGCACCAG 660
||||| |||||||||||||||||||||||||||||||| |||||||| |||||||||||
Sbjct 601 ATCCAAGAGAGACATGATGCAGTGAAGGAGATAGAGAAAAATCTACTAGAGCTGCACCAA 660
Query 661 GTTTTCTTGGACATGGCAGCTCTAGTAGAAGCGCAAGGGCAACAATTAAACAACATAGAG 720
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 661 GTTTTCTTGGACATGGCAGCTCTAGTGGAAGCGCAAGGGCAACAATTAAACAACATAGAG 720
Query 721 AGCCATGTGGCGAAAGCGAGCTCGTTTGTGAGAAGAGGGACTGATCAGCTCCAAGATGCG 780
|||||||| |||||||||||||||||||| |||||||||||||||||||||||||| |||
Sbjct 721 AGCCATGTAGCGAAAGCGAGCTCGTTTGTTAGAAGAGGGACTGATCAGCTCCAAGACGCG 780
Query 781 AGGGAATACCAAAAGAGCTCGAGGAAATGGACTTGTTACGCCATCATCCTCTTCATCGTC 840
||||| |||||||||||||| ||||||||||||||||| |||||||||||||||||||||
Sbjct 781 AGGGAGTACCAAAAGAGCTCCAGGAAATGGACTTGTTATGCCATCATCCTCTTCATCGTC 840
Query 841 ATCTTTATCCTCCTTCTCATTCCCCTTCTACCTCACATAATGCTCATGTTGAAG 894
||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 841 ATCTTTATCCTCCTTCTCATTCCCCTTCTACCTCACATAATGCTCATGTTGAAG 894
> Ahg315228 jgi|Araly1|315228|fgenesh1_pm.C_scaffold_2000261
Length=912
Score = 773 bits (418), Expect = 0.0
Identities = 730/880 (83%), Gaps = 24/880 (3%)
Strand=Plus/Plus
Query 30 GAAG-AACCAGGCTCAACTGGGGGATGTTGAGGCAGGTCAAGAAACGATGAACCTCGATA 88
|||| || ||||| ||| ||| ||||||||||||||| |||| ||||||||||||||||
Sbjct 45 GAAGCAA-CAGGCCCAAATGGATGATGTTGAGGCAGGTAAAGAGACGATGAACCTCGATA 103
Query 89 AATTCTTCGAGGATGTCGAGAATGTGAAGGACGACATGAAAGGAGTCGAGGCTCTTTATA 148
||||||| ||||||||||| ||||| || || |||||||||| || ||| ||||||| |
Sbjct 104 AATTCTTTGAGGATGTCGAAAATGTCAAAGATGACATGAAAGCCGTAGAGACTCTTTACA 163
Query 149 AGAAG-CTTCAAGACTCAAACGAGGAGTGCAAGACGGTTCACAATGCCAAGAAGGTTAAA 207
| ||| ||||| || || ||||| || ||||| ||||| |||||||||||||| || ||
Sbjct 164 A-AAGCCTTCAGGATTCGAACGAAGAATGCAAAACGGTACACAATGCCAAGAAAGTGAAG 222
Query 208 GAGCTACGAGCTAAGATGGATGGAGACGTAGC-AATGGTCCTTAAGAGGGTTAAAATCAT 266
|| || ||||| |||||||||||||| || || | |||||| ||||| || || |||||
Sbjct 223 GAACTCCGAGCAAAGATGGATGGAGATGTCGCTCA-GGTCCTCAAGAGAGTCAAGATCAT 281
Query 267 CAAGCAGAAGCTCGAAGC-CTTAGAGAAAGCGAATGCTAATAGCCGTAATGTCCCTGGTT 325
||| || ||||| || || ||| || ||||||||||||||||||||||||||||||||||
Sbjct 282 CAAACAAAAGCTTGAGGCGCTT-GAAAAAGCGAATGCTAATAGCCGTAATGTCCCTGGTT 340
Query 326 GTGGGCCTGGTTCGTCTACGGATAGGACTC-G-ATCTTCTGTGGTTAGCGGTCTCGGGAA 383
|||| ||||| || || || |||||||| | | | | ||||| |||||||| ||||||||
Sbjct 341 GTGGCCCTGGCTCTTCCACCGATAGGAC-CAGGA-CGTCTGTTGTTAGCGGACTCGGGAA 398
Query 384 GAAGCTCAAAGACTTGATGGATAGTTTTCAAGGTCTACGTGCTCGTATGAACAATGAGTA 443
||||| || |||||||||||||||||||||||||| ||||| || ||||| ||||||
Sbjct 399 AAAGCTTAAGGACTTGATGGATAGTTTTCAAGGTCTGCGTGCGCGGATGAATGCTGAGTA 458
Query 444 TAAGGAAACCGTAGAGCGCAGGTATTTCACAATAACAGGAGAAAAAGCAGACGAGCAAAC 503
||| ||||||||||| ||||| |||||||| ||||| |||||| | |||||||| || ||
Sbjct 459 TAAAGAAACCGTAGAACGCAGATATTTCACGATAACCGGAGAACAGGCAGACGAACAGAC 518
Query 504 AATCGATAACTTGATAGCGAGCGGTGAGAGCGAGAATTTTCTCCAAAAAGCGATTCAAGA 563
|| || |||||||| |||||||||| |||||||||||||| || |||||||| |||||
Sbjct 519 GATTGAGAACTTGATTTCGAGCGGTGAAAGCGAGAATTTTCTTCAGAAAGCGATACAAGA 578
Query 564 GCAAGGAAGAGGTCAAATCCTAGACACGATATCTGAGATCCAGGAGAGACATGATGCAGT 623
||||| ||||| ||||| ||||||| ||||| ||||| || ||||| || || |||||
Sbjct 579 ACAAGGGAGAGGCCAAATATTAGACACCATATCAGAGATTCAAGAGAGGCACGACGCAGT 638
Query 624 GAAGGAGATAGAGAAGAATCT-ACTGGAGCTGCACCAGGTTTTCTTGGACATGGCAGCTC 682
||| ||||||||||||||||| | | ||||| ||||| || ||| | |||||||| ||||
Sbjct 639 GAAAGAGATAGAGAAGAATCTTA-TAGAGCTTCACCAAGTGTTCCTAGACATGGCGGCTC 697
Query 683 TAGTAGAAGCGCAAGGGCAACAATTAAACAACATAGAGAGCCATGTGGCGAAAG-CGAGC 741
| || ||||| ||||| || ||| |||| ||||||| ||||| ||| | |||| |||||
Sbjct 698 TGGTGGAAGCACAAGGTCAGCAACTAAATGACATAGAAAGCCACGTGTC-AAAGGCGAGC 756
Query 742 TCGTTTGTGAGAAGAGGGACTGATCAGCTCCAAGATGCGAGGGAATACCAAAAGAGCTCG 801
||||| |||||||||||||| || ||||| |||||||| || || |||||||||||||||
Sbjct 757 TCGTTCGTGAGAAGAGGGACAGACCAGCTTCAAGATGCAAGAGAGTACCAAAAGAGCTCG 816
Query 802 AGGAAATGGACTTGTTACGCCAT-CATCCTCTTCATCGTCATCTTTATCCTC-CTTCTCA 859
||||||||||||||||| ||||| | || ||||||| ||| | ||| | | |||||||
Sbjct 817 AGGAAATGGACTTGTTATGCCATTCTTC-TCTTCATAGTCGT-TTTCGCTTTGCTTCTCA 874
Query 860 TTCC--CCTTCTACCTCACATAATGCTCATGTTGAAGTGA 897
| || |||| ||||| || ||||||||||||||||||
Sbjct 875 TACCAGCCTTG--CCTCATATCATGCTCATGTTGAAGTGA 912
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 33243183624
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5