BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G11260.1
Length=1905
Score E
Sequences producing significant alignments: (Bits) Value
Ahg919937 jgi|Araly1|919937|scaffold_101218.1 2643 0.0
> Ahg919937 jgi|Araly1|919937|scaffold_101218.1
Length=1610
Score = 2643 bits (1431), Expect = 0.0
Identities = 1544/1600 (97%), Gaps = 2/1600 (0%)
Strand=Plus/Plus
Query 118 TTTAGGATAAAAGAAATGCCTGCCGGTGGATTCGTCGTCGGGGATGGCCAAAAGGCTTAT 177
||||| ||||||||||||||||||||||||||||||||||| ||||||||||| ||||||
Sbjct 6 TTTAGAATAAAAGAAATGCCTGCCGGTGGATTCGTCGTCGGAGATGGCCAAAACGCTTAT 65
Query 178 CCCGGCAAACTCACTCCCTTTGTTCTCTTCACTTGCGTTGTTGCTGCCATGGGCGGTCTC 237
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 66 CCCGGCAAACTCACTCCCTTTGTTCTCTTCACTTGCGTTGTAGCTGCCATGGGCGGTCTC 125
Query 238 ATCTTCGGATACGATATCGGAATCTCCGGTGGTGTGACGTCTATGCCGTCTTTCCTCAAG 297
||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||
Sbjct 126 ATCTTCGGATACGATATCGGAATCTCCGGTGGTGTGACGTCGATGCCGTCTTTCCTTAAG 185
Query 298 CGATTCTTCCCGTCGGTGTATCGGAAACAACAAGAGGACGCGTCAACGAACCAGTACTGT 357
|||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||
Sbjct 186 CGATTCTTCCCGTCGGTGTACCGGAAACAACAAGAGGACGCGTCAACAAACCAGTACTGT 245
Query 358 CAGTACGATAGCCCGACGCTAACGATGTTCACATCGTCTCTATATCTAGCGGCGCTAATT 417
|||||||||||| ||||||| ||||||||||| ||||||||||||||||||||||||||
Sbjct 246 CAGTACGATAGCGCGACGCTTACGATGTTCACTTCGTCTCTATATCTAGCGGCGCTAATA 305
Query 418 TCGTCGCTGGTGGCTTCCACCGTGACAAGAAAGTTCGGACGGCGGCTCTCGATGCTCTTC 477
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 306 TCGTCGCTGGTGGCTTCCACCGTGACAAGAAAGTTCGGACGGAGGCTCTCGATGCTCTTC 365
Query 478 GGCGGCATACTCTTCTGCGCCGGAGCTCTCATCAATGGTTTCGCCAAACATGTTTGGATG 537
|||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||
Sbjct 366 GGCGGCATACTCTTCTGCGCCGGAGCTCTCATCAATGGTTTCGCTAAACATGTGTGGATG 425
Query 538 CTCATCGTCGGTCGTATCTTGCTTGGTTTCGGTATCGGTTTCGCTAATCAGGCTGTGCCA 597
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 426 CTCATCGTCGGTCGTATCTTGCTTGGTTTCGGTATCGGTTTCGCTAATCAGGCTGTGCCA 485
Query 598 CTGTACCTCTCTGAGATGGCTCCATACAAATACAGAGGAGCTTTAAACATTGGTTTCCAG 657
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 486 CTATACCTCTCTGAGATGGCTCCATACAAATACAGAGGAGCTTTAAACATTGGTTTCCAG 545
Query 658 CTCTCAATTACAATCGGAATCCTCGTCGCCGAAGTGCTAAACTACTTCTTCGCCAAGATC 717
|||||||| |||||||||||||||||||||||||| || |||||||||||||||||||||
Sbjct 546 CTCTCAATCACAATCGGAATCCTCGTCGCCGAAGTACTCAACTACTTCTTCGCCAAGATC 605
Query 718 AAAGGCGGTTGGGGATGGCGGCTCAGTCTCGGAGGCGCGGTGGTTCCTGCCTTGATCATA 777
|||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||
Sbjct 606 AAAGGCGGTTGGGGATGGCGGCTCAGCCTCGGAGGCGCGGTGGTTCCCGCCTTGATCATA 665
Query 778 ACCATCGGCTCCCTCGTCCTCCCTGACACTCCCAATTCAATGATCGAGCGTGGCCAACAC 837
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 666 ACCATCGGCTCCCTCGTCCTCCCTGACACTCCCAATTCAATGATCGAGCGTGGCCAACAC 725
Query 838 GAAGAAGCCAAAACCAAGCTCAGACGAATCCGTGGTGTCGATGACGTCAGCCAAGAGTTT 897
||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 726 GAAGAGGCCAAAACCAAGCTCAGGCGAATCCGTGGTGTCGATGACGTCAGCCAAGAGTTT 785
Query 898 GACGATTTGGTCGCCGCTAGTAAAGAGTCGCAGTCGATAGAGCACCCGTGGAGAAACCTC 957
|||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 786 GACGATTTAGTCGCCGCTAGTAAAGAGTCGCAGTCGATAGAGCATCCGTGGAGAAACCTC 845
Query 958 CTCCGCCGCAAGTACCGACCACATCTCACAATGGCCGTTATGATTCCGTTCTTTCAACAG 1017
|||||||| || ||||||||||||||||| |||||||||||||||||||||||||| |||
Sbjct 846 CTCCGCCGTAAATACCGACCACATCTCACGATGGCCGTTATGATTCCGTTCTTTCAGCAG 905
Query 1018 CTAACCGGAATCAATGTGATTATGTTTTACGCTCCGGTTTTGTTCAACACCATTGGTTTC 1077
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 906 CTAACCGGAATCAATGTGATTATGTTTTACGCTCCGGTTTTGTTCAACACCATTGGTTTC 965
Query 1078 ACGACCGATGCTTCTCTCATGTCCGCTGTGGTCACTGGCTCGGTTAACGTGGCCGCTACG 1137
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 966 ACGACCGATGCTTCTCTCATGTCCGCTGTGGTCACTGGCTCGGTTAACGTTGCCGCTACG 1025
Query 1138 CTTGTTTCTATCTACGGTGTTGACAGATGGGGACGTCGGTTTCTCTTTCTTGAAGGTGGT 1197
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1026 CTTGTTTCTATCTACGGTGTTGACAGATGGGGACGTCGGTTTCTCTTTCTTGAAGGTGGT 1085
Query 1198 ACACAAATGCTTATATGCCAGGCTGTGGTTGCAGCTTGCATAGGGGCCAAGTTTGGGGTA 1257
||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||
Sbjct 1086 ACACAAATGCTTATATGCCAGGCTGTGGTTGCAGCGTGCATAGGGGCCAAGTTCGGGGTA 1145
Query 1258 GACGGGACCCCTGGTGAGCTACCAAAGTGGTATGCTATAGTGGTTGTAACGTTCATTTGC 1317
|||||||| ||||||||| ||||||||||||||||||| |||||||||||||| ||||||
Sbjct 1146 GACGGGACTCCTGGTGAGTTACCAAAGTGGTATGCTATCGTGGTTGTAACGTTTATTTGC 1205
Query 1318 ATCTATGTGGCGGGTTTTGCGTGGTCGTGGGGCCCACTAGGGTGGTTAGTACCGAGTGAA 1377
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 1206 ATCTATGTGGCGGGTTTTGCGTGGTCATGGGGCCCACTAGGGTGGTTAGTACCGAGTGAA 1265
Query 1378 ATCTTCCCGTTGGAGATAAGGTCGGCGGCGCAGAGTATCACCGTGTCCGTGAACATGATC 1437
|||||||| |||||||||||||| ||||||||||||||||| ||||| ||||||||||||
Sbjct 1266 ATCTTCCCATTGGAGATAAGGTCCGCGGCGCAGAGTATCACGGTGTCAGTGAACATGATC 1325
Query 1438 TTCACGTTCATTATCGCGCAAATCTTCTTGACGATGCTTTGTCATTTGAAGTTTGGGTTA 1497
|||||||||||||| ||||||||||||||||||||||| || ||||||||||||||||||
Sbjct 1326 TTCACGTTCATTATAGCGCAAATCTTCTTGACGATGCTCTGCCATTTGAAGTTTGGGTTA 1385
Query 1498 TTCCTTGTTTTCGCCTT-TTTCGTGGTGGTGATGTCGATCTTTGTATACATTTTCTTGCC 1556
||||| || |||||||| ||| ||||||||||||||||||||||||||||| ||||||||
Sbjct 1386 TTCCTCGTGTTCGCCTTCTTT-GTGGTGGTGATGTCGATCTTTGTATACATATTCTTGCC 1444
Query 1557 GGAGACGAAAGGGATTCCGATAGAGGAGATGGGTCAAGTGTGGAGGTCACACTGGTATTG 1616
|||||| || ||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1445 GGAGACCAAGGGGATTCCGATAGAGGAGATGGGTCAAGTGTGGAGGTCACATTGGTATTG 1504
Query 1617 GTCAAGGTTTGTGGAGGATGGTGAGTATGGGAATGCGCTTGAGATGGGCAAGAACAGTAA 1676
|||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||
Sbjct 1505 GTCAAGGTTTGTGGAGGATGGTGAGTATGGGAATGCGCTTGAGATGGGTAAGAGCAGTAA 1564
Query 1677 CCAAGCTGGAACGAAGCATGTTTGATTTATCATTGTTTTT 1716
|||||||||||| |||||||||||||| ||||||||||||
Sbjct 1565 CCAAGCTGGAACTAAGCATGTTTGATTCATCATTGTTTTT 1604
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 71571570355
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5