BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G11270.1
Length=1361
Score E
Sequences producing significant alignments: (Bits) Value
Ahg471262 jgi|Araly1|471262|fgenesh2_kg.1__1216__AT1G11270.2 944 0.0
Ahg910877 jgi|Araly1|910877|Al_scaffold_0001_1131 235 6e-61
> Ahg471262 jgi|Araly1|471262|fgenesh2_kg.1__1216__AT1G11270.2
Length=1062
Score = 944 bits (511), Expect = 0.0
Identities = 668/739 (90%), Gaps = 29/739 (4%)
Strand=Plus/Plus
Query 431 GAACGACAGTTGATCCGTCGTATGGAGTCCCGAGGTCCTGATGTTCTTGTAGTGTCCTTT 490
|||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||
Sbjct 166 GAACGACAGTTGATCCGTCGTATGCAATCCCGAGGTCCTGATGTTCTTGTAGTGTCCTTT 225
Query 491 GCTGATG------A---TGAAGAT-AAG-TATG--GGAGA--A-AAGCTGTGTTTGGTTC 534
||||||| | ||| ||| ||| || | ||||| | || ||||||||||||
Sbjct 226 GCTGATGATAATAATGGTGATGATGAAGCTACGACGGAGAGGAGAA-TTGTGTTTGGTTC 284
Query 535 GTCCATAGTTTCTACGTTCAGATTCCCTACTCT-GCACACCTTGATCTGCTATGGTAGTT 593
||||||||||||||||||||||||||||||| | | |||||||| |||||||||||||||
Sbjct 285 GTCCATAGTTTCTACGTTCAGATTCCCTACT-TGGAACACCTTGCTCTGCTATGGTAGTT 343
Query 594 GTGAAGGTCTGATATGCATCTACTG-TGTTTACTCACCGAATATCGTGGTGAATCCCGCC 652
|||| |||||| ||||||||||||| | ||||||| ||||||||||||||||||||||||
Sbjct 344 GTGACGGTCTGGTATGCATCTACTGCT-TTTACTCGCCGAATATCGTGGTGAATCCCGCC 402
Query 653 ACTAAATGGCATCGAAGTTGTCCTCTTTCCAACTTGCAACAGTTCCTCGA-CGACAAATT 711
|||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||
Sbjct 403 ACTAAATGGCATCGAAGTTGTCCTCTTTCCAACTTGCAACAGTTCCTC-ATCGACAAATA 461
Query 712 TGA-AAAGAAAGAGTATGACTTCCCA-ACTCCTAAACTTGCATTCGGTAAAGACAAACTC 769
||| ||| || |||| |||||||||| | |||||| || | ||| |||||||||||||||
Sbjct 462 TGATAAACAA-GAGTGTGACTTCCCAGA-TCCTAAGCTGGGATTTGGTAAAGACAAACTC 519
Query 770 AATGGCACATATAAGCAGGTTTGGTTATATAATTCATCCGAGTTTCGCCTCGACGACGTT 829
|| ||||| | ||||| ||||||||||||||| |||||||||||| |||||||| |||||
Sbjct 520 AAGGGCACGTTTAAGCCGGTTTGGTTATATAACTCATCCGAGTTTGGCCTCGACAACGTT 579
Query 830 ACAACTTGTGAAGTTTTCGATTTTAGCAACAATGCTTGGAGGTACGTTCACCCTGCTTCT 889
|| ||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||
Sbjct 580 ACCACTTGTGAAGTTTTCGATTTTAGCACCAATGCTTGGAGGTACGTTCATCCTGCTTCT 639
Query 890 CCTTATCGGATAAATGATTACCAAGATCCCGTGTATTCTGATGGATCAGTTCATTGGCTC 949
||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||
Sbjct 640 CCTTATCGGATAAATGATTACCAAGATCCCGTGTATTTTGATGGATCACTTCATTGGCTC 699
Query 950 ACCGAGGGTAAAGAATCCAAGATTTTATCTTTCCATCTTCACACTGAAACTTTTCAAGTC 1009
|||||||||||||||| |||||| |||||||| ||||||||||||||||||||||||||
Sbjct 700 ACCGAGGGTAAAGAATGCAAGATATTATCTTTTGATCTTCACACTGAAACTTTTCAAGTC 759
Query 1010 TTATGTGAAGCTCCCTTCCTCCGTGAACGTGACCCTGTTGGCGACTCCATGTGCATCCTC 1069
||||| |||||||||||||| |||||||||||||||| |||||| |||||||||||||
Sbjct 760 ATATGTAAAGCTCCCTTCCTCTGTGAACGTGACCCTGTCGGCGACACCATGTGCATCCTT 819
Query 1070 GATAATCGCTTGTGCGTTTCTGAGATAAACGGT-CCTGCCCAACTGATATGGTCCTTGGA 1128
||||||||||||||||||||||||||||||||| || |||||| |||||||||| || ||
Sbjct 820 GATAATCGCTTGTGCGTTTCTGAGATAAACGGTTCC-GCCCAAGTGATATGGTCGTTCGA 878
Query 1129 TTCTTCAGGCGGCAACAAG 1147
|||||||||||||||||||
Sbjct 879 TTCTTCAGGCGGCAACAAG 897
Score = 219 bits (118), Expect = 6e-56
Identities = 153/169 (91%), Gaps = 6/169 (4%)
Strand=Plus/Plus
Query 215 ATGTTGAAAAGAGATTGCTCGAGTGTTGTTGGATCGGAAAGAGAGAGAGATGGCTCCAGT 274
||||||||||||||| ||||||||||||||| ||| | | | | ||| |||||||||||
Sbjct 1 ATGTTGAAAAGAGATCGCTCGAGTGTTGTTGAATC-G--A-A-A-AGACATGGCTCCAGT 54
Query 275 TTGGCTTTGAAAAGACATTGCTCTAGTGTGGTGAAATTGCTGCTACCACACGATGTTGTT 334
|||| ||||||||||||| |||| |||||||||||||||||||||||||||||||||||
Sbjct 55 TTGGTTTTGAAAAGACATCGCTCGAGTGTGGTGAAATTGCTGCTACCACACGATGTTGTA 114
Query 335 GGGCTCATCCTCGAGAGACTTCCTGTGGAGTCTCTGCTGAGATTCAAGT 383
| ||||||||||||||||||||||||||| ||||||||||| |||||||
Sbjct 115 GAGCTCATCCTCGAGAGACTTCCTGTGGAATCTCTGCTGAGGTTCAAGT 163
> Ahg910877 jgi|Araly1|910877|Al_scaffold_0001_1131
Length=900
Score = 235 bits (127), Expect = 6e-61
Identities = 462/617 (75%), Gaps = 50/617 (8%)
Strand=Plus/Plus
Query 283 GAAAAGACATTGCTCTAGTGTGGTGAAATTGCTGCTACCACACGATGTTGTTGGGCTCAT 342
|||||||| ||||| | | || || |||| || ||||||||||| |||| | ||||||
Sbjct 123 GAAAAGACTTTGCT-T-GAGT-CTGGAATT-CT--TACCACACGATCTTGTAGAGCTCAT 176
Query 343 CCTCGAGAGACTTCCTGTGGAGTCTCTGCTGAGATTCAAGTGC-GTATCCAACCAGTGGA 401
|||| |||||||||||||| | |||||||||||||||||| | |||||||| | ||||
Sbjct 177 CCTCCAGAGACTTCCTGTGAAACCTCTGCTGAGATTCAAGT-CTGTATCCAAGAACTGGA 235
Query 402 AATCCACAATCGAGTCCCAGTGTTTTCAAGAACGACAGTTGATCCGTCGTATGG--AGTC 459
|||| |||||||||||||| | || |||||| || | |||||| || ||| || || |
Sbjct 236 AATCGACAATCGAGTCCCAACGGTTCCAAGAAGGAAACTTGATCTGTAGTA-GGCAAG-C 293
Query 460 CCGAGGTCCTGATGTTCTTGTAGTGT-CCT-T-TGCTGATGATGAAGATAAGTAT--G-G 513
| |||||| ||||||||| | |||| ||| | || | | ||| | | || | | |
Sbjct 294 TCTAGGTCCAGATGTTCTTTTGGTGTCCCTCTGTGAAAAAGGTGATGCT-GGTCTGAGCG 352
Query 514 G--A-G-A--AA-AGCTGTGTT-TGGTTCGTCCATAGTTTCT-ACGTTCAGATTCCC-TA 563
| | | | || || | |||| | || | | | || |||| | ||| || ||||| |
Sbjct 353 GACATGCACGAACAGTTATGTTCAGTTTAG-CAACAGCTTCTAAGGTT-AGGTTCCCTTT 410
Query 564 CTCTGCACACCTTGATCTGCTATGGT-AGTTGTGAAGGTCTGA-TATGCATCTACTGTGT 621
|| | | | || ||||||||||| | |||||| ||||| | |||| ||||||||||
Sbjct 411 TTC-GGGTAGCATGTTCTGCTATGGTCA-TTGTGACGGTCT-AGTATGTTTCTACTGTGT 467
Query 622 TTACT-CACCGAATATCGTGGTGAATCCCGCCACTAAATGGCATCGAAGTTGTCCTCTTT 680
|| | |||||| | ||||| |||||||||||||||||||||||||||||| ||||||||
Sbjct 468 CTA-TGCACCGAGTTTCGTGATGAATCCCGCCACTAAATGGCATCGAAGTTTTCCTCTTT 526
Query 681 CCAACT-TGCAACAGTTCCTCGA-CGACAAATTTGAAAAGAA-AGAGTATGACTTCCCAA 737
|| || | || ||||| || | ||| | | || || | | | | | ||| ||
Sbjct 527 CCGGCTAT-CAGCAGTTGGTC-ATCGAGAGGTAC-AACAGGTTATATTTTAAATTCATAA 583
Query 738 CTCCTAAACTTGCATTCGGTAAAGACAAACTCAATGGCACATATAAG-CAGGTTTGGTTA 796
| ||| |||| | |||||| |||||| ||| |||||||| ||| | ||||||||||
Sbjct 584 GTTTTAAGCTTGGACTCGGTAGGGACAAATTCAGGGGCACATACAAGGC-GGTTTGGTTA 642
Query 797 TATAATTCATCCGAGTTTCGC-CTCGACGACGTTACAACTTGTGAAG-TTTTCGATTTTA 854
|||| ||||||||||| || || ||| ||||||| |||||||| | ||||||||||||
Sbjct 643 TATAGTTCATCCGAGTA-CGGACTAGACAACGTTACCACTTGTGA-GCTTTTCGATTTTA 700
Query 855 GCAACAATGCTTGGAGG 871
| | ||| |||||||||
Sbjct 701 GTACCAACGCTTGGAGG 717
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 50932217112
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5