BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G11300.1
Length=5104
Score E
Sequences producing significant alignments: (Bits) Value
Ahg910885 jgi|Araly1|910885|Al_scaffold_0001_1139 3941 0.0
Ahg471271 jgi|Araly1|471271|fgenesh2_kg.1__1225__AT1G11350.1 599 7e-170
> Ahg910885 jgi|Araly1|910885|Al_scaffold_0001_1139
Length=2463
Score = 3941 bits (2134), Expect = 0.0
Identities = 2355/2463 (96%), Gaps = 10/2463 (0%)
Strand=Plus/Plus
Query 152 ATGAGACTTCATGAGAGCTCGAGTCCTTTTGTTTGTATTCTTGTACTGTCTTGCTTCTTC 211
||||||||||||||||||| ||||||||| |||| | |||||||||||||||||||| ||
Sbjct 1 ATGAGACTTCATGAGAGCTTGAGTCCTTTCGTTTATGTTCTTGTACTGTCTTGCTTCCTC 60
Query 212 TTGAGCGTGTCTCTGGCTCAGGAAAGAGCTTTCTTTTCTGGCAAGCTCAATGATTCCGAG 271
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 TTGAGCTTGTCTCTGGCTCAGGAAAGAGCTTTCTTTTCTGGCAAGCTCAATGATTCCGAG 120
Query 272 ACGATTGTCTCTAGCTTTCGGACATTCAGGTTCGGTTTCTTCAGCCCTGTTAATTCCACA 331
||||| ||||| |||||| | || |||||||||||||||||||||||||||||||||||
Sbjct 121 ACGATAGTCTCCAGCTTTAGCACGTTCAGGTTCGGTTTCTTCAGCCCTGTTAATTCCACT 180
Query 332 AGTCGATATGCTGGTATATGGTATAACAGTGTTTCTGTACAAACTGTGATATGGGTTGCT 391
|||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||
Sbjct 181 AGTCGATATGCTGGTATATGGTATAACAGTATATCTGTACAAACTGTGATATGGGTTGCC 240
Query 392 AACAAAGATAAGCCGATC-AATGATTCCTCTGGAGTTATTTCGGTTTCTCAAGATGGAAA 450
||||||||||| |||| | ||||| ||||||||||||||||| || ||| ||||||||||
Sbjct 241 AACAAAGATAAACCGA-CTAATGACTCCTCTGGAGTTATTTCAGTATCTGAAGATGGAAA 299
Query 451 TCTTGTAGTTACGGATGGACAGAGGCGTGTTCTATGGTCAACTAACGTCTCTACTCAAGC 510
||| |||||||| ||||| ||||||||||||||||||||||||||| |||||||||||||
Sbjct 300 TCTCGTAGTTACTGATGGTCAGAGGCGTGTTCTATGGTCAACTAACATCTCTACTCAAGC 359
Query 511 -CAGTGCCAATTCTACTGTCGCTGAGCTTCTTGATTCCGGGAATCTGGTGCTAAAAGAGG 569
|| |||||||||| |||||||||||||||| ||||| |||||||| |||||||| ||||
Sbjct 360 TCA-TGCCAATTCTTCTGTCGCTGAGCTTCTGGATTCGGGGAATCTCGTGCTAAAGGAGG 418
Query 570 CGAGTAGTGACGCGTATCTTTGGGAGAGCTTCAAGTATCCTACTGATTCTTGGTTGCCAA 629
|||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 419 CGAGTAGTGATGCATATCTTTGGGAGAGCTTCAAGTATCCTACTGATTCTTGGTTGCCAA 478
Query 630 ATATGTTGGTTGGGACAAACGCAAGAATTGGAGGAGGAAACGTCACGATAACTTCTTGGA 689
||||||||||||||||||||||||||| ||||||||||| ||||| |||||||||||||
Sbjct 479 ATATGTTGGTTGGGACAAACGCAAGAACCGGAGGAGGAAATGTCACAATAACTTCTTGGA 538
Query 690 AATCCCCTTCGGATCCTTCGCCTGGGAGCTACACTGCTGCACTCGTTCTTGCTGCATATC 749
|| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 539 AAAACCCTTCGGATCCTTCGCCCGGGAGCTACACTGCTGCACTCGTTCTTGCTGCATATC 598
Query 750 CAGAGCTCTTCATTATGAACAATAATAATAATAACAGTACGGTGTGGCGAAGTGGCCCGT 809
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 599 CAGAGCTCTTCATTATGAACAATAATAATAATAACAGCACGGTGTGGCGAAGTGGCCCGT 658
Query 810 GGAATGGCCAGATGTTTAATGGTTTACCAGATGTTTATGCGGGTGTTTTTCTTTATAGAT 869
|||||||||||||||||||||||||||||||||| ||||| || ||||||||||||||||
Sbjct 659 GGAATGGCCAGATGTTTAATGGTTTACCAGATGTGTATGCAGGCGTTTTTCTTTATAGAT 718
Query 870 TCATAGTTAATGATGACACCAATGGATCTGTCACCATGTCATATGCTAATGATTCAACCT 929
||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
Sbjct 719 TCATAGTTAATGATGACACAAATGGATCTGTCACCATGTCATATGCTAATGATTCAACTT 778
Query 930 TGAGATACTTCTACATGGATTATAGAGGATCTGTGATCCGAAGAGATTGGAGTGAGACTA 989
||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||
Sbjct 779 TGAGATACTTCTACATGGATTATAGAGGATCCGTGATCCGAAGAGATTGGAGTGAGGCTA 838
Query 990 GGAGAAACTGGACGGTCGGGTTACAAGTTCCAGCAACCGAGTGTGACAACTACAGGCGAT 1049
||||||||||||| ||||||||||||||||| |||||||||||||||| |||||||||||
Sbjct 839 GGAGAAACTGGACTGTCGGGTTACAAGTTCCGGCAACCGAGTGTGACATCTACAGGCGAT 898
Query 1050 GTGGCGAATTCGCTACTTGCAATCCACGGAAAAACCCGCTTTGTTCTTGCATTAGAGGGT 1109
|||| ||||||||||| |||||||| ||||||| ||||| ||||||||||||||||||||
Sbjct 899 GTGGGGAATTCGCTACCTGCAATCCTCGGAAAACCCCGCCTTGTTCTTGCATTAGAGGGT 958
Query 1110 TTAGGCCAAGGAACCTAATAGAGTGGAACAATGGAAACTGGAGTGGTGGATGCACAAGAA 1169
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 959 TTAGGCCAAGGAACCTTATAGAGTGGAACAATGGAAACTGGAGTGGTGGATGCACAAGAA 1018
Query 1170 GGGTTCCTTTGCAGTGTGAAAGACAGAACAATAATGGGAGTGCTGATGGGTTTTTGAGGC 1229
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1019 GGGTCCCTTTGCAGTGTGAAAGACAGAACAATAATGGGAGTGCTGATGGGTTTTTGAGGC 1078
Query 1230 TGCGGCGAATGAAACTGCCTGACTTTGCAAGAAGATCCGAAGCAAGCGAACCAGAATGCT 1289
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1079 TGCGGCGAATGAAATTGCCTGACTTTGCAAGAAGATCCGAAGCAAGCGAACCAGAATGCT 1138
Query 1290 TAAGGACTTGTTTGCAGACATGTTCTTGTATAGCTGCTGCTCATGGCTTAGGATATGGCT 1349
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1139 TAAGGACTTGTTTACAGACATGTTCTTGTATAGCTGCTGCTCATGGCTTAGGATATGGCT 1198
Query 1350 GCATGATTTGGAATGGAAGCTTAGTTGATTCGCAGGAGTTGTCTGCTAGTGGATTGGATC 1409
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1199 GCATGATTTGGAATGGAAGCTTAGTTGATTCGCAGGAGTTGTCTGCTAGTGGATTGGATC 1258
Query 1410 TTTATATCCGTCTTGCACATTCAGAAATCAAAACAAAGGATAAGCGACCAATTTTGATCG 1469
||||||||||||||||||| |||||||||||||||||||| | ||||||||||||||| |
Sbjct 1259 TTTATATCCGTCTTGCACAATCAGAAATCAAAACAAAGGACAGGCGACCAATTTTGATTG 1318
Query 1470 GTACAAT-ATTGGCAGGCGGTATTTTTGTTGTGGCAGCTTGTGTTCTTCTGGCACGACGA 1528
|||| || ||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 1319 GTAC-ATCATTGGCAGGCGGTATTTTTGTTGTGGCTGCTTGTGTTCTTCTGGCACGACGG 1377
Query 1529 ATTGTCATGAAGAAAAGAGCGAAAAAGAAAGGAAGAGATGCAGAGCAGATTTTTGAGAGA 1588
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 1378 ATTGTCATGAAGAAAAGAGCAAAAAAGAAAGGAAGAGATGCAGAGCAGATTTTTGAGAGA 1437
Query 1589 GTGGAAGCCTTAGCTGGTGGTAATAAAGGAAAGTTGAAAGAGCTACCATTGTTTGAGTTT 1648
|||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 1438 GTGGAAGCTTTAGCTGGTGGTAATAAAGGAAAGCTGAAAGAGCTACCATTGTTTGAGTTT 1497
Query 1649 CAAGTGCTAGCAGCAGCAACTAATAATTTCTCGCTGAGAAATAAGCTTGGACAAGGTGGC 1708
||||||||||||||||||||||||||||| || || ||||||||||||||||||||||||
Sbjct 1498 CAAGTGCTAGCAGCAGCAACTAATAATTTTTCTCTCAGAAATAAGCTTGGACAAGGTGGC 1557
Query 1709 TTTGGTCCTGTTTACAAAGGGAAGTTGCAAGAGGGGCAAGAGATTGCTGTGAAGAGGCTG 1768
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1558 TTTGGTCCTGTTTACAAAGGGAAGTTGCAAGAGGGGCAAGAGATTGCTGTGAAGAGGCTG 1617
Query 1769 TCACGAGCATCAGGACAAGGGCTTGAGGAGCTTGTTAACGAAGTGGTTGTAATTTCTAAG 1828
|||||||||||||| |||||||||||||| |||||||| ||||||||||| |||||||||
Sbjct 1618 TCACGAGCATCAGGGCAAGGGCTTGAGGAACTTGTTAATGAAGTGGTTGTGATTTCTAAG 1677
Query 1829 TTGCAGCATCGGAATCTGGTGAAATTACTTGGTTGTTGCATTGCAGGAGAAGAGAGGATG 1888
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1678 TTGCAACATCGGAATCTGGTGAAATTACTTGGTTGTTGCATTGCAGGAGAAGAGAGGATG 1737
Query 1889 TTAGTCTATGAGTTCATGCCCAAGAAAAGCTTAGACTATTATCTCTTTGACTCAAGGAGG 1948
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1738 TTAGTCTATGAGTTCATGCCCAAGAAAAGCTTAGACTATTATCTCTTTGACTCAAGGAGG 1797
Query 1949 GCAAAACTTCTTGATTGGAAGACCCGGTTTAACATAATCAATGGAATATGTAGAGGTCTT 2008
||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||
Sbjct 1798 GCAAAACTTCTTGATTGGAAGACGCGGTTTAACATAATCAATGGAATATGTAGAGGGCTT 1857
Query 2009 CTGTACCTTCACAGAGATTCTAGGCTGAGAATCATTCACAGAGACCTGAAAGCTAGTAAC 2068
|||||||||||||||||||||||||||||||||||||| ||||| ||||||||||| |||
Sbjct 1858 CTGTACCTTCACAGAGATTCTAGGCTGAGAATCATTCATAGAGATCTGAAAGCTAGCAAC 1917
Query 2069 ATCTTGTTAGATGAGAATCTGATTCCGAAAATATCTGATTTCGGGTTGGC-CAGAATTTT 2127
||||||||||||||||||||||||||||||||||||||||| |||||||| | || ||||
Sbjct 1918 ATCTTGTTAGATGAGAATCTGATTCCGAAAATATCTGATTTTGGGTTGGCTCGGA-TTTT 1976
Query 2128 TCCAGGGAATGAAGATGAAGCAAATACCAGAAGGGTCGTTGGAACATATGGCTATATGGC 2187
||||||||||||| ||||||||| ||| ||||||||||||||||||| || ||||||||
Sbjct 1977 CCCAGGGAATGAAGGTGAAGCAAACACCCGAAGGGTCGTTGGAACATACGGTTATATGGC 2036
Query 2188 ACCTGAATATGCAATGGGAGGACTGTTTTCAGAGAAATCTGACGTTTTCAGCTTAGGAGT 2247
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 2037 ACCTGAATATGCAATGGGAGGACTGTTTTCAGAGAAATCTGATGTTTTCAGCTTAGGAGT 2096
Query 2248 GATACTCTTAGAGATTATCAGTGGAAGAAGAAACTCAAATTCGACTCTTTTAGCTTATGT 2307
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2097 GATACTCTTAGAGATTATCAGTGGAAGAAGAAACTCAAATTCGACTCTTTTAGCTTATGT 2156
Query 2308 ATGGTCAATCTGGAACGAAGGGGAGATTAATAGTCTGGTAGATCCTGAGATCTTTGACCT 2367
||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||
Sbjct 2157 ATGGTCAATCTGGAACGAAGGGGAGATTAATGGTCTGGTAGATCCTGAGATTTTTGACC- 2215
Query 2368 AC-TCTTTGAGAAAGAAATACACAAATGCATTCACATTGGGCTTTTGTGTGTGCAAGAAG 2426
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2216 ACCTCTTTGAGAAAGAAATACACAAATGCATTCACATTGGGCTTTTGTGTGTGCAAGAAG 2275
Query 2427 CTGCTAACGATAGGCCAAGTGTTTCTACAGTGTGTTCGATGCTCAGCAGCGAGATTGCAG 2486
||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 2276 CTGCTAATGATAGGCCGAGTGTTTCTACAGTGTGTTCGATGCTCAGCAGCGAGATTGCAG 2335
Query 2487 ATATTCCAGAACCAAAACAGCCTGCTTTTATATCAAGGAACAATGTTCCAGAAGCTGAGT 2546
| |||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||
Sbjct 2336 ACATTCCAGAACCAAAACAGCCTGCTTTTATATCAAGGAACAATATTCCAGAAGTTGAGT 2395
Query 2547 CCTCTGAGAACAGTGACCTTAAAGACTCTATCAACAATGTCACCATCACCGATGTTACAG 2606
|| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 2396 CCGCTGAGAACAGTGACCCTAAAGACTCTATCAACAATGTCACCATCACCGATGTTACAG 2455
Query 2607 GAC 2609
|||
Sbjct 2456 GAC 2458
Score = 3206 bits (1736), Expect = 0.0
Identities = 2240/2482 (90%), Gaps = 40/2482 (2%)
Strand=Plus/Plus
Query 2642 ATGAGACTTCATGAGAGCTTGAGTCCTATT-GTTCATGTTCTT-TCACTGTCTTGCTTCT 2699
||||||||||||||||||||||||||| || ||| |||||||| | |||||||||||||
Sbjct 1 ATGAGACTTCATGAGAGCTTGAGTCCT-TTCGTTTATGTTCTTGT-ACTGTCTTGCTTCC 58
Query 2700 TTTTAAGCGTCTCTCTAGCTCATGAAAGAGCTTTATTTTCTGGCACGCTCAATGATTCCG 2759
| || ||| | ||||| ||||| ||||||||||| |||||||||| ||||||||||||||
Sbjct 59 TCTTGAGCTTGTCTCTGGCTCAGGAAAGAGCTTTCTTTTCTGGCAAGCTCAATGATTCCG 118
Query 2760 AGACGATAGTCTCCAGCTTCCGAACGTTCAGGTTCGGTTTCTTCAGCCCTGTTAATTCCA 2819
||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||
Sbjct 119 AGACGATAGTCTCCAGCTTTAGCACGTTCAGGTTCGGTTTCTTCAGCCCTGTTAATTCCA 178
Query 2820 CCAACCGATATGCTGGTATATGGTATAACAGCAT-TCCTGTACAAACTGTGATATGGGTT 2878
| | |||||||||||||||||||||||||| || | |||||||||||||||||||||||
Sbjct 179 CTAGTCGATATGCTGGTATATGGTATAACAGTATAT-CTGTACAAACTGTGATATGGGTT 237
Query 2879 GCTAACAAAGATACGCCGATC-AATGACTCCTCTGGAGTGATTTCAATATCTGAAGATGG 2937
|| |||||||||| |||| | ||||||||||||||||| |||||| |||||||||||||
Sbjct 238 GCCAACAAAGATAAACCGA-CTAATGACTCCTCTGGAGTTATTTCAGTATCTGAAGATGG 296
Query 2938 AAATCTGGTAGTTACTGATGGTCAGAGGCGTGTTTTGTGGTCAACTAACGTTTCTACTCG 2997
|||||| ||||||||||||||||||||||||||| | |||||||||||| | |||||||
Sbjct 297 AAATCTCGTAGTTACTGATGGTCAGAGGCGTGTTCTATGGTCAACTAACATCTCTACTCA 356
Query 2998 AGC-CAGTGCCAATTCTACTGTCGCTGAGCTTTTGGAGTCCGGGAACCTCGTGCTAAAAG 3056
||| || |||||||||| |||||||||||||| |||| || ||||| ||||||||||| |
Sbjct 357 AGCTCA-TGCCAATTCTTCTGTCGCTGAGCTTCTGGATTCGGGGAATCTCGTGCTAAAGG 415
Query 3057 ATGCCAATACCGATGCATATCTTTGGGAGAGCTTCAAGTATCCTACTGATTCTTGGTTGC 3116
| || | || |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 416 AGGCGAGTAGTGATGCATATCTTTGGGAGAGCTTCAAGTATCCTACTGATTCTTGGTTGC 475
Query 3117 CAAATATGTTGGTTGGGACAAACGCAAGAACCGGAGGAGGAAACATCACAATAACTTCTT 3176
||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 476 CAAATATGTTGGTTGGGACAAACGCAAGAACCGGAGGAGGAAATGTCACAATAACTTCTT 535
Query 3177 GGACAAACCCTTCGGATCCTTCGCCGGGGAGCTACACTGCTGCACTCGTTCTTGCTCCAT 3236
||| ||||||||||||||||||||| |||||||||||||||||||||||||||||| |||
Sbjct 536 GGAAAAACCCTTCGGATCCTTCGCCCGGGAGCTACACTGCTGCACTCGTTCTTGCTGCAT 595
Query 3237 ATCCAGAGCTTTTTATTTTCAACAATAATGACAACAA-TGCTACGGTGTGGCGCAGTGGC 3295
|||||||||| || ||| | ||||||||| | || || || ||||||||||| ||||||
Sbjct 596 ATCCAGAGCTCTTCATTATGAACAATAATAATAATAACAGC-ACGGTGTGGCGAAGTGGC 654
Query 3296 CCTTGGAACGGACTGATGTTTAACGGTTTACCAGATGTATAT-CCGGGGCTCTTTCTTTA 3354
|| ||||| || | ||||||||| |||||||||||||| ||| | || | | ||||||||
Sbjct 655 CCGTGGAATGGCCAGATGTTTAATGGTTTACCAGATGTGTATGCAGGCG-TTTTTCTTTA 713
Query 3355 TAGATTTAAAGTTAATGATGACACCAATGGTTCAGCCACCATGTCATATGCTAATGATTC 3414
|||||| | ||||||||||||||| ||||| || | ||||||||||||||||||||||||
Sbjct 714 TAGATTCATAGTTAATGATGACACAAATGGATCTGTCACCATGTCATATGCTAATGATTC 773
Query 3415 AACTTTGAGACACCTCTACTTGGATTATAGAGGATTTGCT-ATCCGGAGAGATTGGAGTG 3473
|||||||||| || ||||| ||||||||||||||| | | ||||| |||||||||||||
Sbjct 774 AACTTTGAGATACTTCTACATGGATTATAGAGGATCCG-TGATCCGAAGAGATTGGAGTG 832
Query 3474 AGGCTAGGAGAAACTGGACGT-TAGGGTCACAAGTTCCGGCAACCGAGTGTGACATTTAC 3532
||||||||||||||||||| | | |||| ||||||||||||||||||||||||||| |||
Sbjct 833 AGGCTAGGAGAAACTGGAC-TGTCGGGTTACAAGTTCCGGCAACCGAGTGTGACATCTAC 891
Query 3533 AGCCGATGTGGTCAATACACTACCTGCAATCCTCGGAAAAACCCGCATTGTTCTTGCATT 3592
|| |||||||| ||| | ||||||||||||||||||||| ||||| |||||||||||||
Sbjct 892 AGGCGATGTGGGGAATTCGCTACCTGCAATCCTCGGAAAACCCCGCCTTGTTCTTGCATT 951
Query 3593 AAAGGGTTTAGGCCAAGGAACCTTATAGAGTGGAACAATGGAAACTGGAGTGGTGGATGC 3652
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 952 AGAGGGTTTAGGCCAAGGAACCTTATAGAGTGGAACAATGGAAACTGGAGTGGTGGATGC 1011
Query 3653 ATAAGAAAGCTCCCTTTGCAGTGTGAAAGACAGAACAATAAGGGGAGTGCTGATAGGTTT 3712
| ||||| | ||||||||||||||||||||||||||||||| |||||||||||| |||||
Sbjct 1012 ACAAGAAGGGTCCCTTTGCAGTGTGAAAGACAGAACAATAATGGGAGTGCTGATGGGTTT 1071
Query 3713 TTGAAGCTGCAGCGAATGAAAATGCCTGACTTTGCAAGAAGATCCGAAGCCAGCGAACCA 3772
|||| ||||| |||||||||| |||||||||||||||||||||||||||| |||||||||
Sbjct 1072 TTGAGGCTGCGGCGAATGAAATTGCCTGACTTTGCAAGAAGATCCGAAGCAAGCGAACCA 1131
Query 3773 GAATGCTTTATGACTTGTTTGCAGTCATGTTCTTGTATAGCTTTTGCTCATGGATTAGGA 3832
|||||||| | ||||||||| ||| ||||||||||||||||| ||||||||| ||||||
Sbjct 1132 GAATGCTTAAGGACTTGTTTACAGACATGTTCTTGTATAGCTGCTGCTCATGGCTTAGGA 1191
Query 3833 TATGGCTGCATGATTTGGAATAGAAGCTTAGTTGATTCACAAGTGTTGTCTGCTAGTGGA 3892
||||||||||||||||||||| |||||||||||||||| || | ||||||||||||||||
Sbjct 1192 TATGGCTGCATGATTTGGAATGGAAGCTTAGTTGATTCGCAGGAGTTGTCTGCTAGTGGA 1251
Query 3893 ATGGATCTTTCTATCCGTCTTGCACATTCAGAATTCAAAACACAGGACAGGCGACCTATT 3952
||||||||| ||||||||||||||| |||||| |||||||| ||||||||||||| |||
Sbjct 1252 TTGGATCTTTATATCCGTCTTGCACAATCAGAAATCAAAACAAAGGACAGGCGACCAATT 1311
Query 3953 TTGATCGGTACATCATTGGCAGGAGGCATTTTTGTTGTGGC-GACTTGTGTCCTTCTGGC 4011
||||| ||||||||||||||||| || |||||||||||||| | ||||||| ||||||||
Sbjct 1312 TTGATTGGTACATCATTGGCAGGCGGTATTTTTGTTGTGGCTG-CTTGTGTTCTTCTGGC 1370
Query 4012 ACGACGTATTGTCATGAAGAAAAGAGCTAAAAAGAAAGGAACAGATGCAGAGCAAATTTT 4071
|||||| |||||||||||||||||||| ||||||||||||| |||||||||||| |||||
Sbjct 1371 ACGACGGATTGTCATGAAGAAAAGAGCAAAAAAGAAAGGAAGAGATGCAGAGCAGATTTT 1430
Query 4072 TAAGAGAGTAGAAGCTTTAGCTGGTGGTAGTAGAGAAAAGTTGAAAGAGCTACCTTTGTT 4131
| ||||||| ||||||||||||||||||| || || |||| ||||||||||||| |||||
Sbjct 1431 TGAGAGAGTGGAAGCTTTAGCTGGTGGTAATAAAGGAAAGCTGAAAGAGCTACCATTGTT 1490
Query 4132 TGAGTTTCAAGTGTTAGCTA-CTGCAACCGATAACTTCTCTCTTAGCAATAAGCTCGGAC 4190
||||||||||||| |||| | | ||||| |||| || ||||| || |||||||| ||||
Sbjct 1491 TGAGTTTCAAGTGCTAGC-AGCAGCAACTAATAATTTTTCTCTCAGAAATAAGCTTGGAC 1549
Query 4191 AAGGCGGTTTTGGTCCGGTTTACAAGGGGATGTTGCTAGAAGGTCAAGAGATTGCTGTGA 4250
|||| || |||||||| |||||||| |||| ||||| ||| || ||||||||||||||||
Sbjct 1550 AAGGTGGCTTTGGTCCTGTTTACAAAGGGAAGTTGCAAGAGGGGCAAGAGATTGCTGTGA 1609
Query 4251 AGAGACTGTCACAAGCATCAGGACAAGGGCTTGAGGAACTTGTCACTGAAGTGGTTGTGA 4310
|||| ||||||| ||||||||| |||||||||||||||||||| | ||||||||||||||
Sbjct 1610 AGAGGCTGTCACGAGCATCAGGGCAAGGGCTTGAGGAACTTGTTAATGAAGTGGTTGTGA 1669
Query 4311 TTTCTAAGTTGCAACATCGAAATCTGGTGAAATTATTTGGTTGCTGCATTGCAGGGGAAG 4370
||||||||||||||||||| ||||||||||||||| ||||||| ||||||||||| ||||
Sbjct 1670 TTTCTAAGTTGCAACATCGGAATCTGGTGAAATTACTTGGTTGTTGCATTGCAGGAGAAG 1729
Query 4371 AAAGGATGTTAGTCTATGAGTTCATGCCCAAGAAAAGCTTAGACTTTTATATATTTGATC 4430
| ||||||||||||||||||||||||||||||||||||||||||| |||| | ||||| |
Sbjct 1730 AGAGGATGTTAGTCTATGAGTTCATGCCCAAGAAAAGCTTAGACTATTATCTCTTTGA-C 1788
Query 4431 -CAAGGGA-AGCAAAACTTCTTGACTGGAACACGCGGTTTGAA-ATAATCAATGGAATAT 4487
||| ||| |||||||||||||| ||||| ||||||||| || ||||||||||||||||
Sbjct 1789 TCAA-GGAGGGCAAAACTTCTTGATTGGAAGACGCGGTTT-AACATAATCAATGGAATAT 1846
Query 4488 GTAGAGGTCTCCTGTACCTTCACAGAGATTCTAGGCTGAGAATCATTCACAGAGATCTGA 4547
||||||| || |||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 1847 GTAGAGGGCTTCTGTACCTTCACAGAGATTCTAGGCTGAGAATCATTCATAGAGATCTGA 1906
Query 4548 AAGCAAGCAACATCTTGCTAGATGAGAATCTGATTCCGAAAATATCTGATTTTGGGTTGG 4607
|||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 1907 AAGCTAGCAACATCTTGTTAGATGAGAATCTGATTCCGAAAATATCTGATTTTGGGTTGG 1966
Query 4608 C-CAGGATATTCCCGGGGAATGAAGATGAAGCAAACACCAGAAGGGTCGTTGGAACATAT 4666
| | |||| ||||| |||||||||| ||||||||||||| |||||||||||||||||||
Sbjct 1967 CTC-GGATTTTCCCAGGGAATGAAGGTGAAGCAAACACCCGAAGGGTCGTTGGAACATAC 2025
Query 4667 GGCTATATGGCACCTGAATATGCAATGGGAGGACTGTTTTCAGAGAAATCTGATGTTTTC 4726
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2026 GGTTATATGGCACCTGAATATGCAATGGGAGGACTGTTTTCAGAGAAATCTGATGTTTTC 2085
Query 4727 AGCTTAGGAGTGATACTCTTAGAGATTATCAGTGGAAGAAGAAACTCACATTCAACTCTT 4786
|||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||
Sbjct 2086 AGCTTAGGAGTGATACTCTTAGAGATTATCAGTGGAAGAAGAAACTCAAATTCGACTCTT 2145
Query 4787 TTGGCTCATGTGTGGTCAATCTGGAACGAAGGGGAGATTAATGGTATGGTAGATCCTGAG 4846
|| ||| |||| ||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 2146 TTAGCTTATGTATGGTCAATCTGGAACGAAGGGGAGATTAATGGTCTGGTAGATCCTGAG 2205
Query 4847 ATTTTTGACCAACTTTTTGAGAAAGAAATACGA-AAATGCGTTCACATTGCGCTTTTGTG 4905
||||||||||| || |||||||||||||||| | |||||| ||||||||| |||||||||
Sbjct 2206 ATTTTTGACCACCTCTTTGAGAAAGAAATAC-ACAAATGCATTCACATTGGGCTTTTGTG 2264
Query 4906 TGTGCAAGACGCTGCTAATGATAGGCCAAGTGTTTCTACAGTGTGTAT-GATGCTTAGCA 4964
||||||||| ||||||||||||||||| |||||||||||||||||| | |||||| ||||
Sbjct 2265 TGTGCAAGAAGCTGCTAATGATAGGCCGAGTGTTTCTACAGTGTGT-TCGATGCTCAGCA 2323
Query 4965 GTGAGGTTGCAGACATTCCAGAACCGAAACAGCCTGCTTTTATGCCTAGAAACGTTGGTT 5024
| ||| ||||||||||||||||||| ||||||||||||||||| | || ||| | ||
Sbjct 2324 GCGAGATTGCAGACATTCCAGAACCAAAACAGCCTGCTTTTATATCAAGGAACAATA-TT 2382
Query 5025 T-AGAAGCTGAGTTCTCTGAGAGCATTG-CTCTTAAAGCCTCTATCAACAATGTCACCAT 5082
||||| ||||| | |||||| || || | || |||| |||||||||||||||||||||
Sbjct 2383 CCAGAAGTTGAGTCCGCTGAGAACAGTGACCCT-AAAGACTCTATCAACAATGTCACCAT 2441
Query 5083 CACTGATGTCT-CAGGACGTTA 5103
||| ||||| | ||||||||||
Sbjct 2442 CACCGATGT-TACAGGACGTTA 2462
> Ahg471271 jgi|Araly1|471271|fgenesh2_kg.1__1225__AT1G11350.1
Length=2649
Score = 599 bits (324), Expect = 7e-170
Identities = 558/670 (83%), Gaps = 20/670 (3%)
Strand=Plus/Plus
Query 4115 AAAGAGCTACCTTTGTTTGAGTTTCAAGTGTTAGCTACT-GCAACCGATAACTTCTCTCT 4173
||||||||||| |||| |||| ||||||||||| | | || || || || || || |
Sbjct 1534 AAAGAGCTACCACTGTTCAAGTTCCAAGTGTTAGC-AGTGGCGACTGACAATTTTTCAAT 1592
Query 4174 TAGC-AATAAGCTCGGACAAGGCGGTTTTGGTCCGGTTTACAAGGGGATGTTGCTAGAAG 4232
| | || || ||||||||||| || |||||| | ||||||||||||| ||| | |||||
Sbjct 1593 CA-CAAACAAACTCGGACAAGGAGGATTTGGTGCTGTTTACAAGGGGAGGTTACAAGAAG 1651
Query 4233 GTCAAGAGATTGCTGTGAAGAGACTGTCAC-AAGCATCAGGACAAGG-GCTTGAGGAACT 4290
| |||||||| ||||||||||| || || | || |||| |||||||| | | ||||| |
Sbjct 1652 GGCAAGAGATCGCTGTGAAGAGGCTTTCGCGAA-CATCGGGACAAGGAG-TCGAGGAGTT 1709
Query 4291 TGTCACTGAAGTGGTTGTGATTTCTAAGTTGCAACATCGAAATCTGGTGAAATTATTTGG 4350
||| | ||||||||| ||||| |||||||||||||| || ||||| |||| ||| ||||
Sbjct 1710 TGTGAATGAAGTGGTCGTGATCTCTAAGTTGCAACACCGGAATCTCGTGAGATTGCTTGG 1769
Query 4351 TTGCTGCATTGCAGGGGAAGAAAGGATGTTAGTCTATGAGTTCATGCCCA-AGAAAAGCT 4409
|| |||||||| ||| ||||| |||||||| ||||||||||||||| ||| |||| | |
Sbjct 1770 TTTCTGCATTGAAGGAGAAGAGAGGATGTTGGTCTATGAGTTCATG-CCAGAGAATTGTT 1828
Query 4410 TAGAC-TTTTATATATTTGATCCAAGG-GAAGCAAA-ACTTCTTGACTGGAACACGCGGT 4466
||||| || | ||||||| || || |||||||| ||||||||||||||| |||||||
Sbjct 1829 TAGACGCATT-TCTATTTGA-CC-CGGTGAAGCAAAGACTTCTTGACTGGAAGACGCGGT 1885
Query 4467 TTGA-AATAATCAATGGAATATGTAGAGGTCTCCTGTACCTTCACAGAGATTCTAGGCTG 4525
|| | |||||| |||| || || |||||||| ||||||||||||||||||| ||||||
Sbjct 1886 TT-ACCATAATCGATGGGATTTGCAGAGGTCTTATGTACCTTCACAGAGATTCAAGGCTG 1944
Query 4526 -AGAATCATTCACAGAGATCTGAAAGCAAGCAACATCTTGCTAGATGAGAATCTGATTCC 4584
|| ||||| ||||||||| | ||||||||||| |||||| ||||||||||||| | ||
Sbjct 1945 AAG-ATCATACACAGAGATTTAAAAGCAAGCAATATCTTGTTAGATGAGAATCTAAACCC 2003
Query 4585 GAAAATATCTGATTTTGGGTTGGCCAGGATATTCCCGGGGAATGAAGATGAAGCAAACAC 4644
||| ||||| ||||||||| |||| ||||| |||| ||||||||| ||||||||||||||
Sbjct 2004 GAAGATATCCGATTTTGGGCTGGCTAGGATTTTCCAGGGGAATGAGGATGAAGCAAACAC 2063
Query 4645 CAGAAGGGTCGTTGGAACATATGGCTATATGGCACCTGAATATGCAATGGGAGGACTGTT 4704
| ||| || ||||||||||| || ||||||||||||||||| ||||||||||| ||||
Sbjct 2064 CCTAAGAGTGGTTGGAACATACGGTTATATGGCACCTGAATACGCAATGGGAGGGTTGTT 2123
Query 4705 TTCAGAGAAATCTGATGTTTTCAGCTTAGGAGTGATACTCTTAGAGATTATCAGTGGAAG 4764
|||||||||||||||||||||||||||||||| ||||| ||||||||| | ||||||||
Sbjct 2124 CTCAGAGAAATCTGATGTTTTCAGCTTAGGAGTCATACTTTTAGAGATTGTGAGTGGAAG 2183
Query 4765 AAGAAACTCA 4774
||||||||||
Sbjct 2184 AAGAAACTCA 2193
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 193218298121
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5