BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G11310.1
Length=2198
Score E
Sequences producing significant alignments: (Bits) Value
Ahg471266 jgi|Araly1|471266|fgenesh2_kg.1__1220__AT1G11310.1 3005 0.0
> Ahg471266 jgi|Araly1|471266|fgenesh2_kg.1__1220__AT1G11310.1
Length=2096
Score = 3005 bits (1627), Expect = 0.0
Identities = 1832/1927 (95%), Gaps = 29/1927 (2%)
Strand=Plus/Plus
Query 165 AGAGAGAAGTTAGATCAAAAGAAGAACACGAAACTCTGACTGTGTCTCTCT-T-TCTCTT 222
|||||||||||||| ||||||||||||||||||||||||||| |||||||| | ||||||
Sbjct 111 AGAGAGAAGTTAGAGCAAAAGAAGAACACGAAACTCTGACTGCGTCTCTCTCTCTCTCTT 170
Query 223 CGTGTGTTTCTA----TAT--TTATATATAAAAAGACAAGATCTCTGGTCTGGAATTAGA 276
|||||||||||| ||| |||||||||||||||||||||||||||||||||| |||
Sbjct 171 CGTGTGTTTCTATCTTTATCATTATATATAAAAAGACAAGATCTCTGGTCTGGAAAGAGA 230
Query 277 AGAATCTTATTTGGGGTTTTTTCTTAGGATTAAGCTCTAATGGCAGA-TCAAGTAAAAGA 335
||| ||||||||||||||||||||||||||||||||||||||||| | |||||||||||
Sbjct 231 AGAGTCTTATTTGGGGTTTTTTCTTAGGATTAAGCTCTAATGGCA-ACCCAAGTAAAAGA 289
Query 336 GCGGACTTTAGAGGAGACCTCTACGTGGGCAGTTGCTGTTGTTTGCTTTGTCTTACTCTT 395
||||||||||||||||||||||||||||||||| |||||||||||||| |||||||| ||
Sbjct 290 GCGGACTTTAGAGGAGACCTCTACGTGGGCAGTAGCTGTTGTTTGCTTCGTCTTACTATT 349
Query 396 TATTTCGATTGTCCTCGAACATTCTATTCACAAAATTGGAACCTGGTTTAAAAAGAAGCA 455
|||||||||||||||||||||||| ||| |||| ||||||||||||||||||||||||||
Sbjct 350 TATTTCGATTGTCCTCGAACATTCGATTAACAAGATTGGAACCTGGTTTAAAAAGAAGCA 409
Query 456 CAAGCAGGCTCTTTTTGAAGCTCTTGAAAAGGTCAAAGCAGAGCTTATGCTGTTGGGATT 515
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 410 CAAGCATGCTCTTTTTGAAGCTCTTGAAAAGGTCAAAGCAGAGCTTATGCTGTTGGGATT 469
Query 516 CATATCACTACTACTCACAATTGGACAAACACCAATCTCAAATATCTGCATCTCCCAGAA 575
|||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 470 CATATCACTACTGCTCACAGTTGGACAAACACCAATCTCAAATATCTGCATCTCCCAGAA 529
Query 576 AGTTGCGTCAACAATGCACCCTTGCAGTGCTGCTGAAGAAGCTAAAAAATACGGCAAGAA 635
||||| ||||||||||||||||||||| |||| ||||||| ||||||||||||||||
Sbjct 530 GGTTGCAAAAACAATGCACCCTTGCAGTGCCGCTGCAGAAGCTGAAAAATACGGCAAGAA 589
Query 636 AGACGCCGGAAAGAAAGATGATGGAGATGGAGATAAACCCGGTCGAAGACTTCTTCTTGA 695
|||| |||||||| || | || ||||||||||||||||||||||||||||||||||||
Sbjct 590 AGACACCGGAAAG-AA-A-GA---AGATGGAGATAAACCCGGTCGAAGACTTCTTCTTGA 643
Query 696 GTTAGCTGAATCTTATATCCATAGAAGAAGTTTAGCCACCAAAGGCTATGACAAATGTGC 755
||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 644 GTTAGCTGACTCTTATATCCATAGAAGAAGTTTAGCCACCAAAGGTTATGACAAATGTGC 703
Query 756 AGAGAAGGGGAAAGTGGCTTTTGTATCTGCTTATGGAATCCACCAGCTGCATATATTCAT 815
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 704 AGAGAAGGGGAAAGTGGCTTTTGTATCTGCTTATGGAATCCACCAGCTGCATATATTCAT 763
Query 816 CTTCGTGCTCGCGGTTGTTCATGTTGTTTACTGCATTGTTACTTATGCTTTCGGAAAGAT 875
||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 764 CTTCGTGATCGCGGTTGTTCATGTTATTTACTGCATTGTTACTTATGCTTTCGGAAAGAT 823
Query 876 CAAGATGAGGACGTGGAAGTCGTGGGAGGAAGAGACAAAGACAATAGAGTATCAGTATTC 935
||||||||| | |||||||||||||||||| ||||||||||| |||||||||| ||||||
Sbjct 824 CAAGATGAGAAGGTGGAAGTCGTGGGAGGAGGAGACAAAGACTATAGAGTATCGGTATTC 883
Query 936 CAACGATCCTGAGAGGTTCAGGTTTGCGAGGGACACATCTTTTGGGAGAAGACATCTCAA 995
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 884 CAACGATCCTGAGAGGTTCAGGTTTGCGAGGGACACATCTTTTGGGAGAAGACATCTCAA 943
Query 996 TTTCTGGAGCAAGACGAG-AGTCACACTATGGATTGTTTGtttttttAGACAGTTCTTTG 1054
|||||||||||||||||| | | |||||||||| ||| |||||||| |||||||||||||
Sbjct 944 TTTCTGGAGCAAGACGAGTA-TTACACTATGGACTGTGTGTTTTTTCAGACAGTTCTTTG 1002
Query 1055 GATCTGTCACCAAAGTTGATTACTTAGCACTAAGACATGGTTTCATCATGGCGCATTTTG 1114
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 1003 GATCTGTCACCAAAGTTGATTACTTTGCACTAAGACATGGTTTCATCATGGCGCATTTTG 1062
Query 1115 CTCCCGGTAACGAATCAAGATT-CGATTTCCGCAAGTATATTCAGAGATCATTAGAGAAA 1173
||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||
Sbjct 1063 CTCCCGGTAACGAATCAAG-TTACGATTTCCGCAAGTATATTCAGAGATCATTAGAGAAA 1121
Query 1174 GACTTCAAAACCGTTGTTGAAATCAGTCCGGTTATCTGGTTTGTCGCTGTGCTATTCCTC 1233
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1122 GACTTCAAAACCGTTGTTGAAATCAGTCCGGTTATCTGGTTTGTCGCTGTGCTATTCCTC 1181
Query 1234 TTGACCAATTCATATGGATTACGTTCTTACCTCTGGTTACCATTCATTCCACTAGTCGTA 1293
||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1182 TTGGCCAATTCACATGGATTACGTTCTTACCTCTGGTTACCATTCATTCCACTAGTCGTA 1241
Query 1294 ATTCTAATAGTTGGAACAAAGCTTGAAGTCATAATAACAAAATTGGGTCTAAGAATCCAA 1353
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1242 ATTCTAATAGTTGGAACAAAGCTTGAAGTCATAATAACAAAATTGGGTCTAAGAATCCAA 1301
Query 1354 GAGAAAGGTGATGTGGTGAGAGGCGCCCCAGTGGTTCAGCCTGGTGATGACCTCTTCTGG 1413
|| ||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1302 GACAAAGGTGATGTTGTGAGAGGCGCCCCGGTGGTTCAGCCTGGTGATGACCTCTTCTGG 1361
Query 1414 TTTGGCAAGCCACGCTTCATTCTTTTCCTTATTCACTTGGTCCTTTTTACGAATGCATTT 1473
|||||| | ||||| ||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 1362 TTTGGCCATCCACGGTTCATTCTTTTCCTTATCCACTTGGTCCTTTTTACGAATGCATTT 1421
Query 1474 CAACTTGCATTCTTTGCCTGGAGTACGTATGAATTCAATCTCAATAATTGTTTCCATGAA 1533
|||||||| |||||||||||||| |||||| |||||||||||||||||||||||||||||
Sbjct 1422 CAACTTGCCTTCTTTGCCTGGAGCACGTATCAATTCAATCTCAATAATTGTTTCCATGAA 1481
Query 1534 AGCACTGCAGATGTGGTCATTAGACTTGTAGTTGGAGCTGTTGTGCAGATACTTTGCAGC 1593
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 1482 AGCACTGCAGATGTGGTCATTAGACTTGTAGTTGGAGCTGTTGTACAGATACTTTGCAGC 1541
Query 1594 TATGTGACTCTTCCACTCTATGCACTTGTTACTCAGATGGGTAGTAAAATGAAGCCAACA 1653
||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||
Sbjct 1542 TATGTGACTCTTCCACTCTATGCTCTTGTTACTCAGATGGGTTCTAAAATGAAGCCAACA 1601
Query 1654 GTATTCAACGATAGAGTAGCCACGGCATTAAAGAAGTGGCATCACACTGCAAAGAACGAG 1713
||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||
Sbjct 1602 GTATTCAACGATAGAGTAGCCACGGCATTAAAGAAGTGGCATCGCACTGCAAAGAGCGAG 1661
Query 1714 ACGAAACACGGAAGACACTCGGGATCCAACACACCTTTCTCTAGCCGTCCAACCACACCA 1773
|| ||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||
Sbjct 1662 ACTAAACACGGAAGACACTCGGAATCCAACACACCTTTCTCTAGCCGTCCAGCCACACCA 1721
Query 1774 ACACATGGCTCATCTCCAATCCATCTCCTTCACAATTTCAATAACCGGAGCGTTGAAAAT 1833
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1722 ACACATGGCTCATCTCCAATCCATCTCCTTCACAATTTCAATAACCGGAGCGTTGAAAGT 1781
Query 1834 TACCCAAGTTCTCCTTCTCCTAGATACTCTGGTCATGGTCATCATGAACACCAATTTTGG 1893
||||||| |||||||||||||||| |||||||||||||||||||||||||||| ||||||
Sbjct 1782 TACCCAAATTCTCCTTCTCCTAGACACTCTGGTCATGGTCATCATGAACACCACTTTTGG 1841
Query 1894 GATCCTGAGTCTCAACACCAAGAAGCTGAAACTTCCACACATCATTCTCTTGCGCATGAA 1953
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1842 GATCCTGAGTCCCAACACCAAGAAGCTGAAACTTCCACACATCATTCTCTTGCGCATGAA 1901
Query 1954 AGCTCAGAAC-----CT-GTTCTTGCATCTGTGGAACTTCCTCCTATAAGGACTAGCAAA 2007
||||||||| || ||||||||||||||||||||||||||||||||||||||||||
Sbjct 1902 AGCTCAGAAAAGAAGCTTGTTCTTGCATCTGTGGAACTTCCTCCTATAAGGACTAGCAAA 1961
Query 2008 AGCTTAAGAGATTTTTCTTTTAAGAAATGATGATTCTTG-TTTGCTATATTTGATTTCGT 2066
||||||||||||||||||||||||||||||||||||||| ||| | |||||| ||||||
Sbjct 1962 AGCTTAAGAGATTTTTCTTTTAAGAAATGATGATTCTTGATTT--TGTATTTGGTTTCGT 2019
Query 2067 ACAGTGG 2073
|||||||
Sbjct 2020 ACAGTGG 2026
Score = 161 bits (87), Expect = 2e-38
Identities = 106/114 (93%), Gaps = 6/114 (5%)
Strand=Plus/Plus
Query 17 AAAGTCAAAACGTTGAAGCTTTCTCGAATAACGCCTTCTTTAGTTTACAGTCTCTCGTTG 76
||||||||||| ||||||||||||||||||| |||||| ||| ||||||||||||||||
Sbjct 1 AAAGTCAAAACTTTGAAGCTTTCTCGAATAA-GCCTTCATTA--TTACAGTCTCTCGTTG 57
Query 77 CGGGTCTTAtcttcttcttcttcttcCCTCTTTCGTCTGCTCTATATTATGACC 130
||||||||||||||||||||||| || ||||||||||||||||||||||||||
Sbjct 58 CGGGTCTTATCTTCTTCTTCTTC--CC-TCTTTCGTCTGCTCTATATTATGACC 108
Score = 87.9 bits (47), Expect = 3e-16
Identities = 53/56 (95%), Gaps = 0/56 (0%)
Strand=Plus/Plus
Query 2142 GATACATGATATGTTATTCTCTGGCAATGCTTAAGAGTTTCACGAATTACACATAC 2197
|||| ||||||| |||| ||||||||||||||||||||||||||||||||||||||
Sbjct 2041 GATAGATGATATATTATACTCTGGCAATGCTTAAGAGTTTCACGAATTACACATAC 2096
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 82732012140
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5