BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G11320.1
Length=1535
Score E
Sequences producing significant alignments: (Bits) Value
Ahg471268 jgi|Araly1|471268|fgenesh2_kg.1__1222__AT1G11320.1 2185 0.0
> Ahg471268 jgi|Araly1|471268|fgenesh2_kg.1__1222__AT1G11320.1
Length=1439
Score = 2185 bits (1183), Expect = 0.0
Identities = 1364/1450 (94%), Gaps = 17/1450 (1%)
Strand=Plus/Plus
Query 4 TTTTCGCATCTTCTCT----ATTCAAATCCTCTTATCATCGATAGAAATGATCATCACTG 59
||||| |||||||||| |||| |||||||||||||||||||||||||||| ||||||
Sbjct 1 TTTTCTCATCTTCTCTACGGATTC-AATCCTCTTATCATCGATAGAAATGATCGTCACTG 59
Query 60 GGTTCGAAATTTTCTAGAATCTTCAAGCTTTCCTTACCAGTTTCTGATTAAAAGATGGAC 119
||| |||||||||||||||||||||||||||| ||||||||||| || ||||| ||||||
Sbjct 60 GGTACGAAATTTTCTAGAATCTTCAAGCTTTCGTTACCAGTTTCCGA-TAAAAAATGGAC 118
Query 120 CCAATTGCTTCGGTGTTGGAGAAAGTGAAGAGCTTTACGAAATCGAGCCAGGATTTAGTC 179
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 119 CCAATTGCTTCGGTGTTGGAGAAAGTGAAGAGCTTTACGAAATCGAGCCAGGATTTAGTC 178
Query 180 TCCCGCCATTTCGGCTTCCATGAGAATCCTTCTCGCCTGAATCCGATTGATATCTTGAAG 239
||||||| ||||||||||||||||||||||||||||| |||||||||||||||||| |||
Sbjct 179 TCCCGCCGTTTCGGCTTCCATGAGAATCCTTCTCGCCAGAATCCGATTGATATCTTAAAG 238
Query 240 CGATTACAAAGAGAAACATTCTCGGATTTGATGAAACTTAGAGAAAGACAAGAGAAAGTA 299
|||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||
Sbjct 239 AGATTACAAAGAGAAGCATTCTCGGATTTGATGAAACTTAGAGATAGACAAGAGAAAGTT 298
Query 300 GAGCGGATCATTTCCTCGCAGAAATTATCGAAAGGAGGTCCCTTTCAAGAGACTAGCACT 359
|||||||| |||||||||||||||| ||| ||| |||||| ||||||||||||||||||
Sbjct 299 GAGCGGATTATTTCCTCGCAGAAATCATCAAAATCAGGTCCGTTTCAAGAGACTAGCACT 358
Query 360 CATGTGAGAGGTGAAGTTGATGTGCTTGGAGCTATATTGCTGATGGGAAACACTGACGAG 419
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 359 CATGTGAGAGGTGAGGTTGATGTGCTTGGAGCTATATTGCTGATGGGAAACACTGACGAG 418
Query 420 GAAAGTTTCAATGGACTCAACAAAGAAGGAGTGAGACCGGGATTGCTTTCAAGGTTTGTG 479
|| ||||||||||||||| | ||||||||||||||||| |||||||||||||||||||||
Sbjct 419 GAGAGTTTCAATGGACTCCATAAAGAAGGAGTGAGACCTGGATTGCTTTCAAGGTTTGTG 478
Query 480 TTTGAAACGAGTCTTAGGGAGACAGATAGGCTTGTGGCTGAGCTTGTTGCTGGATACA-A 538
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 479 TTTGAAACGAGTCTTAGGGAGACAGATAGGCTTGTGGCTGAGCTTGTTGCTGGATACAGA 538
Query 539 TGGGGCAGGAAGTCACAGGGATTTTT-TAGGAGGAGAGTTGTCTTTAGCCAAAGTCTTCT 597
|||| ||||| |||| | ||||||| | ||| |||||||||||||||||||||||||||
Sbjct 539 -GGGGAAGGAAATCACTGTGATTTTTCTGGGA-GAGAGTTGTCTTTAGCCAAAGTCTTCT 596
Query 598 ACAAGGCAGATATTAATGATTGGTTCTCTGCTATTGCTATTCCTGTTGGCGCGCATTTCA 657
|||||||||||||||||||||||||||||||| ||||| |||||||||| ||||||||||
Sbjct 597 ACAAGGCAGATATTAATGATTGGTTCTCTGCTGTTGCTGTTCCTGTTGGTGCGCATTTCA 656
Query 658 GAGACATTGAGGCTTCTACTGTGTCTTCTTACCAGGGAATGAGTCTCACAGAAGTTTCTG 717
||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 657 GAGACGTTGAGGCTTCTACTGTGTCTTCTTACCAGGGAATGAGTCTTACAGAAGTTTCTG 716
Query 718 AACTTGGACCACCTCTTTTAAGCCAACATAATGGGAGCGCCATAGGGTTAACATTCAGAA 777
||||||||||||||||||||| |||||||||||| |||||||||||||||||| ||||||
Sbjct 717 AACTTGGACCACCTCTTTTAAACCAACATAATGGTAGCGCCATAGGGTTAACAGTCAGAA 776
Query 778 AGTCAAATATCACAGCTTCACTGGCTCAGTCTATGTCAAACGTTGAAGTTGAACAGGGTT 837
||||||| ||||||||||||||||| || || ||||||||||||||||||||||| ||
Sbjct 777 AGTCAAACATCACAGCTTCACTGGCCCAATCCATGTCAAACGTTGAAGTTGAACA-GG-- 833
Query 838 TGACTGCACCGAATCGTTGTTTCAGAACATTTGGGCAAGTAACCTGCCACATTCTCAGAA 897
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 834 -G--TGCACCGAATCGTTGTTTCAGAACATTTGGGCAAGTAACCTGCCACATTCTCAGAA 890
Query 898 GTTTAAAGCTATCTCTATTGGGCTGTCACCAAGTTTTAACATCATCTAGCAATCTCCATT 957
|||||||||||||||||||||| |||||||||||||||||| |||||||||| |||||||
Sbjct 891 GTTTAAAGCTATCTCTATTGGGATGTCACCAAGTTTTAACACCATCTAGCAACCTCCATT 950
Query 958 CTGTTGGAGCCATTACAGTTCCAGTAAGTTTCCTAAGGCGCCATACTGCTACGGAGCCTG 1017
||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||
Sbjct 951 CTGTTGGAGCCATTACACTTCCAGTAAGTTTTCTAAGGCGCCATACTGCTACGGAGCCTG 1010
Query 1018 AACCATCAGCACCGCCTCTGGAGATGAGTAGAAACATGAATCATGTGTCGTCCAGTTCCA 1077
|| || ||||||||||||||||||||||||||| |||||||||||||| ||| |||||||
Sbjct 1011 AAACACCAGCACCGCCTCTGGAGATGAGTAGAAGCATGAATCATGTGTTGTCTAGTTCCA 1070
Query 1078 TTGCTTTGAAGTTAGACTCTCTAATGGACGAGTCTACAAAACTTGGGGGATGGATTGAAA 1137
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1071 TTGCTTTGAAGTTAGACTCTCTAATGGACGAGTCTACAAAACTTGGGGGATGGATTGAAA 1130
Query 1138 TTCAGAACTCAAGAGAAAAGCAAGTGAAATGGTCAGTGTCTATTACAGACAACCCAGAGG 1197
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 1131 TTCAGAACTCAAGAGAAAAGCAAGTAAAATGGTCAGTGTCTATTACAGACAACCCAGAGG 1190
Query 1198 ATGAAGTGGGCTGGGGCATGAGCGTTGGGGGAGTTGTTGATGGTTCAAGAAATCATGATC 1257
||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||
Sbjct 1191 ATGAAGTGGGCTGGGGCATGAGCGTTGGGGGTGTTGTTGATGGTACAAGAAATCATGATC 1250
Query 1258 AGTTTCAGGTGGAATCATATCTGAAATTCAACATAGGCGATAGGTTTAGATTAAGTCCAT 1317
|||||||||||||||| ||||||||||| |||||||| ||| ||||||| ||||| |||
Sbjct 1251 AGTTTCAGGTGGAATCGTATCTGAAATTAAACATAGGTGATCGGTTTAGCTTAAGACCAG 1310
Query 1318 GTCTTGTTTATCACACAAACAGTGACGGAAGAACCATAGGTCTTATGCTAAAGTCTCACT 1377
||||||||||||||| ||||||| |||||||||||||||||||||||||| |||||||||
Sbjct 1311 GTCTTGTTTATCACATAAACAGTAACGGAAGAACCATAGGTCTTATGCTACAGTCTCACT 1370
Query 1378 GGTCGCTGTGATCTCAAGTTTACTCATTACTTGTACATTGATGGTTCGAATTACCACTGA 1437
|||||||||||||||||| ||||||| ||| |||||||||||||||| || |||||||||
Sbjct 1371 GGTCGCTGTGATCTCAAGGTTACTCAATACATGTACATTGATGGTTCTAAATACCACTGA 1430
Query 1438 CTGCAGTTTT 1447
||||| ||||
Sbjct 1431 CTGCA-TTTT 1439
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 57478179705
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5