BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G11340.1
Length=2706
Score E
Sequences producing significant alignments: (Bits) Value
Ahg471270 jgi|Araly1|471270|fgenesh2_kg.1__1224__AT1G11340.1 3452 0.0
Ahg471279 jgi|Araly1|471279|fgenesh2_kg.1__1233__AT1G11410.1 2139 0.0
> Ahg471270 jgi|Araly1|471270|fgenesh2_kg.1__1224__AT1G11340.1
Length=2668
Score = 3452 bits (1869), Expect = 0.0
Identities = 2114/2234 (95%), Gaps = 9/2234 (0%)
Strand=Plus/Plus
Query 1 ATGATTATTGTTGGTGTTCTTTTAGTTAGTTTCACACTTTTAAGTCACATGAATCAGTTC 60
||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||
Sbjct 1 ATGATTATTGTTGGTGTTCATTTAGTTAGTTTCACACTTTTAAGTCACAAGAATCAGTTC 60
Query 61 TTACATCTTTTTGAAAGTCCAACCTTTGAGATATATCCGGAACTGGGGCGTGACTCACAG 120
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 61 TTACATCTTTTTGAAAGTCCAACCTTTGAGAAATATCCGGAACTGGGGCGTGACTCACAG 120
Query 121 TTAATGACTGATCCACTTGGTTTTCAATACTTACACAGCATTTATACATTTTCACTAAAT 180
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 121 TTAATGGCTGATCCACTTGGTTTTCAATACTTACACAGCATTTATACATTTTCACTAACT 180
Query 181 CCTTGCTCTG-AAACAAACACAAATATGAAGGTTGTCTTCGTTATCTTCTTTTTCTTCCT 239
|||||||| | ||||||||||||| |||||| || || || ||||||||||||||| |||
Sbjct 181 CCTTGCTCAGAAAACAAACACAAACATGAAGATTATCGTCATTATCTTCTTTTTCTCCCT 240
Query 240 CTTCCAATTTTGTATCTCTGTGGATACAATTATGAGAAGACAGTCCTTGAGAGATGGTGA 299
||| |||| |||||||||||| ||||| || |||||||||||||||||||||||||||||
Sbjct 241 CTTTCAATCTTGTATCTCTGTTGATACGATCATGAGAAGACAGTCCTTGAGAGATGGTGA 300
Query 300 GGTTATACTCTCCGCAGGGAAGAGATTCGCGTTTGGATTCTTCAGTCTTGGGGATTCAG- 358
|| |||| ||| | ||||||||||||||| |||||||||||||||||||||||||| |
Sbjct 301 TGTCATACACTCTGTAGGGAAGAGATTCGCATTTGGATTCTTCAGTCTTGGGGATTC-GA 359
Query 359 AGCTCCGGTATGTTGGGATTTGGTATGCTCAAATCTCTCAACAGACTATTGTTTGGGTTG 418
||||||||||||| ||||||||||||||||||||| |||||||||||||||| |||||||
Sbjct 360 AGCTCCGGTATGTGGGGATTTGGTATGCTCAAATCACTCAACAGACTATTGTATGGGTTG 419
Query 419 CAAACAGAGACCATCCTATTAATGACACCTCTGGGATGGTAAAGTTCAGCAACAGAGGCA 478
|||||||||||||||||||||||||||||||||| || |||||||||| |||||| |||
Sbjct 420 CAAACAGAGACCATCCTATTAATGACACCTCTGGTCTGATAAAGTTCAGTAACAGATGCA 479
Query 479 ATCTCTCTGTCTATGCATCTGACAATGAAACAGAGCTTATCTGGTCAACAAATGTTTCAG 538
|||||| ||| |||||||||| ||||| |||||||| ||||||||| || |||||||||
Sbjct 480 ATCTCTGTGTGTATGCATCTGTCAATGGAACAGAGCCTATCTGGTCTACTGATGTTTCAG 539
Query 539 ATAGTATGTTGGAACCAACTTTAGTTGCTACACTCTCTGATTTAGGCAACCTTGTTCTGT 598
||||||| |||||| ||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 540 ATAGTATCTTGGAAACAACTTTAGTTGCTAGACTCTCTGATTTAGGCAACCTTGTTCTGC 599
Query 599 TTGATCCAGTCACAGGGAGAAGTTTCTGGGAGAGCTTTGATCACCCTACAGACACGTTTC 658
||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||
Sbjct 600 TTGATCCAGTCACAGGGAGAAGTTTCTGGGAGAGCTTTGATCATCCTACAGACACTTTTC 659
Query 659 TTCCGTTTATGA-GATTGGGATTCACACGAAAAGACGGTTTGGATCGCTCTCTAACATCA 717
|||||||||||| || |||| |||||||||||||||||||||||||||| ||| ||||||
Sbjct 660 TTCCGTTTATGAGGA-TGGGTTTCACACGAAAAGACGGTTTGGATCGCTTTCTGACATCA 718
Query 718 TGGAAGTCTCATGGTGACCCTGGTTCTGGAGACTTAATACTGCGGATGGAACGTAGAGGG 777
||||| |||||||| |||||||||| ||||||||||| | ||||||||||||||||||||
Sbjct 719 TGGAAATCTCATGGGGACCCTGGTTGTGGAGACTTAACATTGCGGATGGAACGTAGAGGG 778
Query 778 TTTCCACAGTTGATTCTGTACAAAGGT-GTAACCCCATGGTGGCGTATGGGGTCATGGAC 836
||||| ||||||||||||||||||||| | | ||| ||||||||||||||||| |||||
Sbjct 779 TTTCCGCAGTTGATTCTGTACAAAGGTCG-AGTCCCGTGGTGGCGTATGGGGTCGTGGAC 837
Query 837 CGGGCATAGGTGGAGCGGGGTGCCTGAAATGCCAATAGGGTACATCTTCAATAACTCATT 896
|||||||||||||||||| ||||||||||||||||||||||| |||||||||||||| ||
Sbjct 838 CGGGCATAGGTGGAGCGGTGTGCCTGAAATGCCAATAGGGTATATCTTCAATAACTCGTT 897
Query 897 TGTGAATAATGAGGACGAAGTATCCTTCACTTACGGTGTGACAGATGCTTCGGTCATAAC 956
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 898 TGTGAATAATGAGGACGAAGTATCCTTCACTTACGGTGTGACAGATGCTTCAGTCATAAC 957
Query 957 AAGAACCATGGTGAACGAGACTGGAACCATGCACCGGTTTACATGGATTGCGAGGGACAA 1016
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 958 AAGAACCATGGTGAACGAGACTGGAACCATGCACCGGTTCACATGGATTGCGAGGGACAA 1017
Query 1017 GAGATGGAATGATTTCTGGTCAGTTCCTAAAGAGCAGTGCGATAACTACGCTCATTGTGG 1076
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1018 GAGATGGAATGATTTCTGGTCAGTTCCTAAAGAGCAGTGCGATAACTACGCTCATTGTGG 1077
Query 1077 CCCTAACGGTTACTGTGATTCCCCTAGCTCAAAAACGTTTGAGTGCACATGCCTACCTGG 1136
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 1078 CCCTAACGGTTACTGTGATCCCCCTAGCTCAAAAACGTTTGAGTGCACATGCCTACCTGG 1137
Query 1137 TTTTGAGCCCAAGTTTCCCCGGCATTGGTTCTTGAGGGACTCTTCTGGCGGGTGTACAAA 1196
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1138 TTTTGAGCCCAAGTTTCCCCGGCATTGGTTCTTGAGGGACTCTTCTGGCGGGTGTACCAA 1197
Query 1197 GAAAAAGAG-AGCTTCAATATGCAGTGAGAAAGACGGGTTTGTGAAGTTAAAGCGCATGA 1255
|||||| || |||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 1198 GAAAAA-AGGAGCTTCAAGATGCAGTGAGAAAGACGGGTTTGTGAAGTTAAAGCGCATGA 1256
Query 1256 AGATTCCCGACACATCAGATGCAAGTGTGGATATGAACATAACATTGAAGGAGTGCAAAC 1315
||||||| ||||| |||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 1257 AGATTCCTGACACGTCAGATGCAAGTGTGGATATGAACATAACATTTAAGGAGTGCAAAC 1316
Query 1316 AGAGGTGCTTGAAGAACTGCTCTTGTGTCGCTTACGCAAGTGCTTACCACGAGAGTAAAA 1375
|||||||||||| ||||||||||||||| ||||| |||||||||||||||||||||||||
Sbjct 1317 AGAGGTGCTTGAGGAACTGCTCTTGTGTTGCTTATGCAAGTGCTTACCACGAGAGTAAAA 1376
Query 1376 GAGGAGCAATAGGATGCTTGAAATGGCATGGTGGTATGTTGGATGCAAGGACATACTTGA 1435
||||||||||||||||||||| |||||| |||||||||||||||| |||||||||||||
Sbjct 1377 GAGGAGCAATAGGATGCTTGACATGGCACAGTGGTATGTTGGATGCGAGGACATACTTGA 1436
Query 1436 ACTCGGGACAAGATTTCTACATACGTGTAGACAAGGAAGAGTTAGCGCGGTGGAACAGAA 1495
||| ||||||||||||||||||||||||||||||||||||||||| | |||||||||||
Sbjct 1437 GCTCCGGACAAGATTTCTACATACGTGTAGACAAGGAAGAGTTAGCACTGTGGAACAGAA 1496
Query 1496 ATGGCTTATCAGGGAAGAGGAGAGTCCTTCTGATTCTTATCAGTTTGATTGCAGCCGTAA 1555
| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1497 AGGGCTTATCAGGGAAGAGGAGAGTCCTTCTGATTCTTATCAGTTTGGTTGCAGCCGTAA 1556
Query 1556 TGTTACTAACTGTCATTTTGTTCTGTGTTGTAAGGGAGCGACGAAAGTCAAACAGGCATA 1615
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 1557 TGTTACTAACTGTCATTTTGTTCTGTGTCGTAAGGGAGCGACGAAAGTCAAACAGGCATA 1616
Query 1616 GAAGCTCTTCGGCAAACTTCGCCCCGGTCCCTTTTGATTTTGACGAATCATTTAGATTTG 1675
||||||||||||||||||||||||| |||||||| |||||||| |||||||| |||||||
Sbjct 1617 GAAGCTCTTCGGCAAACTTCGCCCCAGTCCCTTTCGATTTTGAAGAATCATTCAGATTTG 1676
Query 1676 AACAAGACAAGGCGAGAAACCGGGAGTTACCTTTATTTGATCTTAACACGATCGTTGCAG 1735
| |||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||
Sbjct 1677 AGCAAGACAAGGCGAGAAACCGGGAGTTACCTTTCTTTGATCTTAACACGATCGCTGCAG 1736
Query 1736 CAACAAATAACTTCTCTTCCCAAAACAAGCTTGGAGCAGGTGGTTTCGGACCTGTTTATA 1795
|| | ||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 1737 CAGCGAATAACTTCTCTTCCCAAAACAAGCTTGGAGCAGGTGGTTTCGGACCCGTTTATA 1796
Query 1796 AGGGCGTGTTACAAAACCGTATGGAGATAGCGGTGAAGAGGTTGTCGAGAAACTCGGGAC 1855
||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||| |
Sbjct 1797 AGGGCGTGTTACAAAACGGTATGGAGATAGCGGTGAAGAGGTTGTCGAAAAACTCGGGGC 1856
Query 1856 AAGGAATGGAAGAGTTCAAGAACGAGGTCAAGCTGATATCAAAGTTGCAGCATCGAAATC 1915
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 1857 AAGGAATGGAAGAGTTCAAGAACGAGGTCAAGTTGATATCAAAGTTGCAGCATCGAAATC 1916
Query 1916 TCGTGAGGATCTTAGGATGTTGCGTTGAATTGGAAGAGAAGATGTTGGTATACGAGTATT 1975
| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1917 TAGTGAGGATCTTAGGATGTTGCGTTGAATTGGAAGAGAAGATGTTAATATACGAGTATT 1976
Query 1976 TACCAAACAAGAGCCTAGACTATTTCATATTCCATGAAGAGCAGAGAGCAGAGTTGGATT 2035
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 1977 TACCAAACAAGAGCCTAGACTATTTCATATTCCATGAAGAGCAGAGAGCGGAGTTGGATT 2036
Query 2036 GGCCAAAAAGAATGGAGATAGTCCGAGGGATTGCTCGTGGAATCTTATATCTTCATCAAG 2095
|||||||| | ||||||||| |||| ||||||||||||||||||||||||||||||||||
Sbjct 2037 GGCCAAAACGGATGGAGATAATCCGCGGGATTGCTCGTGGAATCTTATATCTTCATCAAG 2096
Query 2096 ATTCAAGACTGAGAATCATCCACAGAGATCTCAAGGCCAGCAATATACTTCTTGACAGTG 2155
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2097 ATTCAAAACTGAGAATCATCCACAGAGATCTCAAGGCCAGCAATATACTTCTTGACAGTG 2156
Query 2156 AAATGATCCCAAAGATTTCAGATTTCGGCATGGCTAGAATCTTTGGGGGCAACCAAATGG 2215
|||||||||| |||||||| ||||||||||||||||||||||| ||||| |||||||| |
Sbjct 2157 AAATGATCCCTAAGATTTCGGATTTCGGCATGGCTAGAATCTTCGGGGGAAACCAAATCG 2216
Query 2216 AAGGATGCACAAGT 2229
||||||||||||||
Sbjct 2217 AAGGATGCACAAGT 2230
Score = 658 bits (356), Expect = 0.0
Identities = 392/410 (96%), Gaps = 0/410 (0%)
Strand=Plus/Plus
Query 2297 CCGACGTCTATAGCTTTGGAGTATTGATGTTAGAGATCATAACCGGAAAGAAAAACAGTG 2356
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2259 CCGACGTCTACAGCTTTGGAGTATTGATGTTAGAGATCATAACCGGAAAGAAAAACAGTG 2318
Query 2357 CTTTCCACGAGGAATCATCTAACTTAGTCGGACATATTTGGGATCTATGGGAAAACGGTG 2416
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 2319 CTTTCCACGAGGAATCATCTAACTTAGTCGGACATATTTGGGATCTATGGGAAAACGGCG 2378
Query 2417 AAGCAACAGAGATCATAGACAATTTAATGGACCAAGAGACTTATGATGAGAGAGAAGTGA 2476
|| ||||||||||||||||||| |||||||||||||||| |||||||||||| |||||||
Sbjct 2379 AACCAACAGAGATCATAGACAAGTTAATGGACCAAGAGAGTTATGATGAGAGCGAAGTGA 2438
Query 2477 TGAAGTGCATACAAATTGGGTTGCTCTGTGTGCAAGAAAACGCTTCGGACAGAGTAGACA 2536
||||||||||||| ||||||||||||||||||||||||||||||||||| ||||| ||||
Sbjct 2439 TGAAGTGCATACACATTGGGTTGCTCTGTGTGCAAGAAAACGCTTCGGATAGAGTCGACA 2498
Query 2537 TGTCCTCTGTTGTCATCATGTTGGGTCATAACGCCACTAATCTTCCGAATCCAAAGCATC 2596
||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 2499 TGTCCTCTGTTGTTATCATGTTGGGTCATAACGCCACTAATCTTCCGAATCCGAAGCATC 2558
Query 2597 CTGCGTTTACTTCCGCGAGAAGGAGAGGCGGTGAAAATGGTGCTTGTCTTAAGGGACAAA 2656
|||||||||||||| |||| ||||||||||| ||||||||||||||||| |||||| |||
Sbjct 2559 CTGCGTTTACTTCCACGAGGAGGAGAGGCGGCGAAAATGGTGCTTGTCTCAAGGGAAAAA 2618
Query 2657 CCGGTATTTCTGTTAATGACGTTACCTTCAGCGACATTCAAGGTCGTTAA 2706
||||||||||||||||||| |||||||||| |||||||||||||||||||
Sbjct 2619 CCGGTATTTCTGTTAATGATGTTACCTTCACCGACATTCAAGGTCGTTAA 2668
> Ahg471279 jgi|Araly1|471279|fgenesh2_kg.1__1233__AT1G11410.1
Length=2676
Score = 2139 bits (1158), Expect = 0.0
Identities = 2001/2402 (83%), Gaps = 82/2402 (3%)
Strand=Plus/Plus
Query 265 ACAAT-TATGAGAAGACAGTCCTTGAGAGATGGTGAGGTTATACTCTCCGCAGGGAAGAG 323
||||| | ||||||||||||| |||| ||||||||| |||||| |||| | ||| || ||
Sbjct 70 ACAATCT-TGAGAAGACAGTCTTTGAAAGATGGTGATGTTATATTCTCTGAAGGAAAAAG 128
Query 324 ATTCGCGTTTGGATTCTTCAGTCTTGGGG-ATTCAGAGCTCCGGTATGTTGGGATTTGGT 382
||| || |||||||||||||| ||||||| ||||| ||||| ||||||||||||||||||
Sbjct 129 ATTTGCTTTTGGATTCTTCAG-CTTGGGGAATTCAAAGCTCAGGTATGTTGGGATTTGGT 187
Query 383 ATGCTCAAATCTCTCAACAGACTATTGTTTGGGTTGCAAACAGAGACCATCCTATTAATG 442
|||||||| ||||| |||||||| |||| ||||||||||| |||||||||||||||||||
Sbjct 188 ATGCTCAAGTCTCTGAACAGACTGTTGTATGGGTTGCAAATAGAGACCATCCTATTAATG 247
Query 443 ACACCTCTGGGATGGTAAAGTTCAGCAACAGAGGCAATCTCTCTGTCTATGCATCTGACA 502
|||| ||||| || |||||||||| | |||||| ||||| | ||| |||||||||| ||
Sbjct 248 ACACATCTGGTCTGATAAAGTTCAGTACCAGAGGGAATCTTTGTGTGTATGCATCTGTCA 307
Query 503 ATGAAACAGAGCTTATCTGGTCAACAAATGTT-TCAGATAGT-ATGTTGGAACCAACTTT 560
||| |||||||| ||||||||| || ||||| | |||| | || ||||| ||||
Sbjct 308 ATGGAACAGAGCCTATCTGGTCTACTGATGTTAT-TGATA-TGATCCAAGAACCGGCTTT 365
Query 561 AGTTGCTACA-CTCTCTGATTTAGGCAACCTTGTTCTGTTTGATCCAGTCACAGGGAGAA 619
|||||| | | || |||||||||||||||||||||| ||||||| ||||| |||| ||
Sbjct 366 AGTTGCGA-AGCTAACTGATTTAGGCAACCTTGTTCTACTTGATCCTGTCACTGGGAAAA 424
Query 620 GTTTCTGGGAGAGCTTTGATCACCCTACAGACACGTTT-CTTCCGTTTATG-AGATTGGG 677
|||| |||||||||||| |||| |||||| |||| ||| ||||| |||||| || || ||
Sbjct 425 GTTTTTGGGAGAGCTTTAATCATCCTACAAACAC-TTTGCTTCCTTTTATGAAG-TTAGG 482
Query 678 ATTCACACG-AAAAGACGGTTTGGATCGCT-CTCTAACATCATGGAAG-TCTCATGGTGA 734
|||||| || ||| ||||| ||||||| | | | ||||| ||| || |||| ||||||
Sbjct 483 ATTCACTCGTCAAA-ACGGTGTGGATCG-TATTATGACATCTTGG-AGATCTCCTGGTGA 539
Query 735 CCCTGGTTCTGGAGAC-TTA-ATACTGCGGATGGAACGTAGAGGGTTTCCACAGTTGATT 792
||| ||||||||| || ||| |||| ||||| ||||||||||||||||| ||| ||||
Sbjct 540 CCCGGGTTCTGGAAACATTACATAC--CGGATAGAACGTAGAGGGTTTCCGCAGATGATG 597
Query 793 CTGTACAAAGGTGTAACCCCATGGTGGCGTA-TGGGGTCATGGACCGGGCATAGGTGGAG 851
||||||| ||| | || | |||||||||| | || |||||||| ||||| || |||||
Sbjct 598 ATGTACAAGGGTCTGACTCTGTGGTGGCGTACT-GGATCATGGACAGGGCAAAGATGGAG 656
Query 852 CGGGGTGCCTGAAATG-CCAATAGGGTACATCTTCAATAACTCATTTGTGAATAAT-GAG 909
|| |||||||||||| | || | || |||||||||| ||| |||||||||| | |
Sbjct 657 TGGTGTGCCTGAAATGACAAACA-AGTTTATCTTCAATATCTCCTTTGTGAATACTCCA- 714
Query 910 GACGAAGTATCCTTCACTTACGGTGTGACAGATGCTTCGGTCATAACAAGAACCATGGTG 969
|| |||||||| |||||||||| ||| ||||||||||| | |||| ||| || |
Sbjct 715 GATGAAGTATCGATCACTTACGGAGTGTTGGATGCTTCGGTTACAACACGAATGGTGCTA 774
Query 970 AACGAGACTGGAAC-CATGCACCGGTTTACATGGATTGCGAGGGACAAGAGATGGAATGA 1028
|||||||| ||||| | |||| ||||| | ||||| | ||| || |||| ||||| ||
Sbjct 775 AACGAGACGGGAACTC-TGCAACGGTTCAGATGGAACGGGAGAGATAAGAAATGGATTGG 833
Query 1029 TTTCTGGTCAGTTCCTAAAGAGCAGTGCGATAACTAC-GCTCATTGTGGCCCTAACGGTT 1087
|||||||||| ||| |||| |||| || | |||| | || ||||| ||||||||
Sbjct 834 GTTCTGGTCAGCTCCCGAAGATAAGTGTGACATCTACAAC-CACTGTGGTTTTAACGGTT 892
Query 1088 ACTGTGATTCCC-CTAGCT-CA-AAAACGTTTGAGTGCACATGCCTACCTGGTTTTGAGC 1144
||||||| |||| | || | || | || |||||||||| | ||| |||| || | ||||
Sbjct 893 ACTGTGA-TCCCACCAG-TACAGACAA-GTTTGAGTGCTCTTGCTTACCGGGCTACGAGC 949
Query 1145 CCAAGTTTCCCCG-GCATTGGTTCTTGAGGGACT-CTTCTGG-CGGGTGTACAAAGA-AA 1200
| ||| ||||| | |||||||||||||||| | |||| || || || || | || ||
Sbjct 950 CTAAGACACCCCGAG-ATTGGTTCTTGAGGGA-TGCTTC-GGATGGTTGCACGAGGATAA 1006
Query 1201 AAGAGAGCTTCAATATGCAGTGAGAAAGACGGGTTTGTGAAGTTAAAGCGCA-TGAAGAT 1259
||| |||||| ||||| | || |||||| ||||||| ||||| ||||| | |||||||
Sbjct 1007 AAG-CAGCTTCGATATGTAATGGGAAAGAAGGGTTTGCAAAGTTGAAGCG-AGTGAAGAT 1064
Query 1260 TCCCGACACATCAGATG-CAAGTGTGGATATGAACATAACATTGAAGGAGTGCAAACAGA 1318
|||| | ||||||| || || ||| ||||||||||||||||||||||| ||| ||||||
Sbjct 1065 TCCCAATACATCAGCTGTTAA-TGTAGATATGAACATAACATTGAAGGAATGCGAACAGA 1123
Query 1319 GGTGCTTGAAGAACTGCTCTTGTGTCGCTTACGCAAGTGCTTACCACGAGAGT-AAAAGA 1377
||||||||||||||||||||||||||||||| || ||||||||||| |||||| ||||
Sbjct 1124 GGTGCTTGAAGAACTGCTCTTGTGTCGCTTATGCGAGTGCTTACCATGAGAGTGAAAA-C 1182
Query 1378 GGAGCAATAGGATGCTTGAAATGGCATGGTGGTATGTTGGATGCAAGGACATACTTGAAC 1437
||||||| ||| ||||||| |||||| || |||| ||||| ||||||||||||||| |
Sbjct 1183 GGAGCAAAAGGGTGCTTGACATGGCACGGCAATATGCTGGATACAAGGACATACTTGAGC 1242
Query 1438 TCGGGACAAGATTTCTACATACGTGTAGACAAGGAAGAGTTAGCGCGGTGGAACAGAAAT 1497
|||||||||||||||||| |||| ||||| ||| |||||||| ||||||||| |||||
Sbjct 1243 TCGGGACAAGATTTCTACCTACGCGTAGATAAGTCAGAGTTAGTGCGGTGGAATGGAAAT 1302
Query 1498 GGCTTATCAGGGAAGAGGAGAGTCCTTCTGATTCTTATCAGTTTGATTGCAGCCGTAATG 1557
|||| ||||||||||| |||| | || | ||||| ||||||||| |||||| ||| |||
Sbjct 1303 GGCTCATCAGGGAAGATGAGACTTTTTTTAATTCTCATCAGTTTGCTTGCAGTCGTCATG 1362
Query 1558 TTACTAACTG-TCATTTTGTTCTGTGTT-GTAAGGGAGCGACGAAAG-TCAAACAGGCAT 1614
||||| | || ||| |||||||||| || ||||| | ||| || || | ||| |||| |
Sbjct 1363 TTACTTA-TGATCAGTTTGTTCTGT-TTCATAAGGAAACGAAGACAGTTTAAA-AGGC-T 1418
Query 1615 -AGAAGCTCTTCGGCAAACTTCGCCCCG-GTCCCTTTTGATTTTGACGAATCATTTAGAT 1672
||||| || | ||| |||||| ||| | | |||||||| |||| || ||||| | |
Sbjct 1419 GAGAAGAGCTCCATCAAGCTTCGCTCCGAG-CTCTTTTGATCTTGAAGACTCATTCATAC 1477
Query 1673 TTG-A-A-C---AAGACAAGGCGAGAAACCGGGAGTTACCTTTATTTGATCTTAACACGA 1726
||| | | | | ||||| | |||| ||||||||| ||| | ||||| |||| |||||
Sbjct 1478 TTGAAGAGCTTGAGGACAAATCAAGAACCCGGGAGTTGCCTCTCTTTGAGCTTAGCACGA 1537
Query 1727 TCGTTGCAGCAACAAATAACTTCTCTTCCCAAAACAAGCTTGGAGCAGGTGGTTTCGGAC 1786
| | ||||||||| ||||||||| ||| |||||||||||||||||||||||||| ||||
Sbjct 1538 TTGCTGCAGCAACGAATAACTTCGCTTTTCAAAACAAGCTTGGAGCAGGTGGTTTTGGAC 1597
Query 1787 CTGTTTATAAGGGCGTGTTACAAAACCGTATGGAGATAGCGGTGAAGAGGTTGTCGAGAA 1846
| ||||||||||| ||||||||||| ||||||| ||||| |||||||||||||| | ||
Sbjct 1598 CGGTTTATAAGGGAGTGTTACAAAATGGTATGGAAATAGCAGTGAAGAGGTTGTC-AAAA 1656
Query 1847 A-CTCGGGACAAGGAATGGAAGAGTTCAAGAACGAGGTCAAGCTGATATCAAAGTTGCAG 1905
| |||||| ||||||||||||||||||||||||||||||||| ||||||| |||||||||
Sbjct 1657 AGCTCGGGGCAAGGAATGGAAGAGTTCAAGAACGAGGTCAAGTTGATATCGAAGTTGCAG 1716
Query 1906 CATCGAAATCTCGTGAGGATCTTAGGATGTTGCGTTGAATTGGAAGAGAAGATGTTGGTA 1965
|||||||||||||||||||||||||||||||| |||||||| |||||||||||| |||||
Sbjct 1717 CATCGAAATCTCGTGAGGATCTTAGGATGTTGTGTTGAATTTGAAGAGAAGATGCTGGTA 1776
Query 1966 TACGAGTATTTACCAAACAAGAGCCTAGACTATTTCATATTCCATGAAGAGCAGAGAGCA 2025
|||||||||||||||||||||||||||||||||||||||||| |||| ||||| ||||
Sbjct 1777 TACGAGTATTTACCAAACAAGAGCCTAGACTATTTCATATTCAATGAGGAGCATAGAGTG 1836
Query 2026 GAGTTGGATTGGCCAAAAAGAATGGAGATAGTCCGAGGGATTGCTCGTGGAATCTTATAT 2085
|||||||||||||||||| |||||| |||| |||| |||||||| |||||||||||||||
Sbjct 1837 GAGTTGGATTGGCCAAAACGAATGGGGATAATCCGCGGGATTGCGCGTGGAATCTTATAT 1896
Query 2086 CTTCATCAAGATTCAAGACTGAGAATCATCCACAGAGATCTCAAGGCCAGCAATATACTT 2145
||||||||||||||||| ||||| |||||||||||||| ||||||||||||||| |||||
Sbjct 1897 CTTCATCAAGATTCAAGGCTGAGGATCATCCACAGAGACCTCAAGGCCAGCAATGTACTT 1956
Query 2146 CTTGACAGTGAAATGATCCCAAAGATTTCAGATTTCGGCATGGCTAGAATCTTTGGGGGC 2205
||||||| ||||||||| || |||||| | ||||||||| ||||||||||||| ||||||
Sbjct 1957 CTTGACAATGAAATGATACCGAAGATTGCGGATTTCGGCCTGGCTAGAATCTTCGGGGGC 2016
Query 2206 AACCAAATGGAAGGATGCACAAGTAGGGTCGTCGGAACATTCGGATATATGGCACCGGAG 2265
|||||||| |||||| |||||| | | ||||||||||||| |||||| ||| |||| |||
Sbjct 2017 AACCAAATCGAAGGAAGCACAAATCGAGTCGTCGGAACATACGGATACATGTCACCAGAG 2076
Query 2266 TATGCAATGGAGGGACAGTTCTCCATTAAATCCGACGTCTATAGCTTTGGAGTATTGATG 2325
||||||||||| || |||||||| ||||||||||| ||||| |||||||||||||||||
Sbjct 2077 TATGCAATGGACGGCCAGTTCTCTATTAAATCCGATGTCTACAGCTTTGGAGTATTGATC 2136
Query 2326 TTAGAGATCATAACCGGAAAGAAAAACAGTGCTTTCCACGAGGAATCATCT-AA-CTTAG 2383
|||||||||||||||||||||||||||||||||||| | |||||||| | | || || ||
Sbjct 2137 TTAGAGATCATAACCGGAAAGAAAAACAGTGCTTTCTATGAGGAATCTT-TGAATCT-AG 2194
Query 2384 TCGGACATATTTGGGATCTATGGGAAAACGGTGAAGCAACAGAGATCATAGACAATTTAA 2443
|| |||||||||||||| ||||||||| |||||||| | ||||||||||||||| ||||
Sbjct 2195 TCAAACATATTTGGGATCGATGGGAAAAAGGTGAAGCTATAGAGATCATAGACAAATTAA 2254
Query 2444 TG-GACCAAGAGACTTATGATGAGAGAGAAGTGATGAAGTGCATACAAATTGGGTTGCTC 2502
|| | |||| |||||||||| ||| ||||||||||||||| |||| |||||||||||
Sbjct 2255 TGAGTG-AAGATACTTATGATGTGAGCGAAGTGATGAAGTGCTTACACATTGGGTTGCTT 2313
Query 2503 TGTGTGCAAGAAAACGCTTCGGACAGAGTAGACATGTCCTCTGTTGTCATCATGTTGGGT 2562
|| ||||||||||||| ||| |||||| ||||||||||||||||||| ||||||| ||
Sbjct 2314 TGCGTGCAAGAAAACGTTTCAGACAGACCAGACATGTCCTCTGTTGTCTTCATGTTAGGC 2373
Query 2563 CATAACGCCACTAATCTTCCGAA-TCCAAAGCATCCTGCGTTTACTTCCGCGA-GAAGGA 2620
|||||||||| | ||||||| | ||| ||||||||||||||||| | | || ||||||
Sbjct 2374 CATAACGCCATTGATCTTCC-ATCTCCGAAGCATCCTGCGTTTACGGCGG-GAAGAAGGA 2431
Query 2621 GA 2622
||
Sbjct 2432 GA 2433
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 102081856600
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5