BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G11350.1
Length=2680
Score E
Sequences producing significant alignments: (Bits) Value
Ahg471271 jgi|Araly1|471271|fgenesh2_kg.1__1225__AT1G11350.1 4139 0.0
Ahg910891 jgi|Araly1|910891|Al_scaffold_0001_1145 1325 0.0
Ahg471269 jgi|Araly1|471269|fgenesh2_kg.1__1223__AT1G11330.1 654 0.0
> Ahg471271 jgi|Araly1|471271|fgenesh2_kg.1__1225__AT1G11350.1
Length=2649
Score = 4139 bits (2241), Expect = 0.0
Identities = 2492/2616 (95%), Gaps = 6/2616 (0%)
Strand=Plus/Plus
Query 3 GGATTAAAT-CAACCCTTAAAGCTCTACGTTTCTCTCAAAGTTGCTGAGAAGATGGGTTG 61
||||| ||| ||| || || |||||| ||||||||||| | || ||||||||||||||||
Sbjct 1 GGATT-AATACAAGCCATATAGCTCTGCGTTTCTCTCAGACTTCCTGAGAAGATGGGTTG 59
Query 62 TTTGCTAATTCTTCTTCTTACATTGATTTGCTTTTCCTTGAGGCTTTGTTTGGCTACTGA 121
|||| | |||||||||||||| |||| ||||||||||||||||||||||||||| |||||
Sbjct 60 TTTGTTTATTCTTCTTCTTACTTTGACTTGCTTTTCCTTGAGGCTTTGTTTGGCAACTGA 119
Query 122 TGTAATCACGTTTTCTAGCGAGTTCAGGGACTCTGAGACTGTCGTCTCCAACCACAGCAC 181
| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 120 TACAATCACGTTTTCTAGCGAGTACAGGGACTCTGAGACTGTCGTCTCCAACCACAGCAC 179
Query 182 CTTCAGGTTTGGTTTCTTCAGCCCGGTTAACTCCACAGGACGTTATGCAGGGATATGGTT 241
|||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||
Sbjct 180 CTTCAGGTTTGGTTTCTTCAGCCCGGTTAATTCCACTGGACGTTATGCAGGGATATGGTT 239
Query 242 CAATAATATTCCTGTTCAAACCGTGGTTTGGGTAGCAAACAGTAACAGCCCGATCAATGA 301
|||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 240 CAATAACATTCCTGTTCAAACCGTGGTTTGGGTAGCAAACAGGAACAGCCCGATCAATGA 299
Query 302 CTCTTCCGGAATGGTTTCCATATCCAAGGAAGGGAATCTTGTTGTTATGGATGGTCGCGG 361
|||||||||||||||| |||||||||| |||||||||||||| |||||||||||||| ||
Sbjct 300 CTCTTCCGGAATGGTTGCCATATCCAACGAAGGGAATCTTGTGGTTATGGATGGTCGTGG 359
Query 362 ACAGGTTCACTGGTCCACCAATGTCTTGGTGCCGGTGGCTGCTAACACCTTCTATGCCCG 421
|||||||||||||||||||||||||| ||||||||||| |||||||||| |||||||||
Sbjct 360 ACAGGTTCACTGGTCCACCAATGTCTCGGTGCCGGTGGTTGCTAACACCACCTATGCCCG 419
Query 422 GTTGCTGAATACAGGGAACCTCGTGCTGCTAGGAACTACTAATACTGGGGATGAGATTCT 481
||||||||||||||||||||| |||||||||||||||||||| | |||||||||||||||
Sbjct 420 GTTGCTGAATACAGGGAACCTTGTGCTGCTAGGAACTACTAACAGTGGGGATGAGATTCT 479
Query 482 TTGGGAGAGCTTTGAGCATCCTCAAAACATATATTTGCCAACAATGAGTCTTGCTACTGA 541
|||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||
Sbjct 480 TTGGGAGAGCTTTGAGCATCCTCAAAACATTTATTTGCCAACAATGAGACTTGCTACTGA 539
Query 542 CACGAAAACAGGCAGGAGCCTTAAGCTAAGATCTTGGAAAAGCCCGTTTGATCCATCGCC 601
| |||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 540 CGCGAAAACAGGGAGGAGCCTTAAGCTAAGATCTTGGAAAAGCCCGTCTGATCCATCGCC 599
Query 602 TGGACGATACTCTGCAGGTTTGATTCCTCTGCCATTTCCAGAACTTGTTGTCTGGAAAGA 661
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 600 TGGACGATACTCTGCAGGTTTGATTCCTCTGCCATTTCCAGAACTTGTCGTCTGGAAAGA 659
Query 662 TGATCTTCTGATGTGGCGTAGCGGTCCATGGAATGGTCAATACTTCATTGGGTTACCAAA 721
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 660 TGATCTTCTGATGTGGCGTAGCGGTCCGTGGAATGGTCAATACTTCATTGGGTTACCAAA 719
Query 722 TATGGATTACCGTATCAATCTTTTCGAGTTAACCCTTAGTAGTGACAATCGAGGATCTGT 781
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 720 TATGGATTACCGTATCAATCTTTTCGAGTTAACCCTTAGTAGTGACAATCGAGGATCTGT 779
Query 782 CTCCATGTCCTATGCTGGAAATACTTTGTTGTATCATTTTCTCTTGGACTCCGAAGGAAG 841
|||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||
Sbjct 780 CTCCATGTCCTATGCTGGAAATACATTGCTGTATCATTTTCTCTTGGACTCCGAAGGAAA 839
Query 842 CGTGTTTCAGAGAGATTGGAACGTGGCTATCCAAGAATGGAAGACCTGGTTAAAGGTCCC 901
|||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||
Sbjct 840 CGTGTTTCAGAGAGATTGGAACTTGGCTATGCAAGAATGGAAGACCTGGTTAAAGGTCCC 899
Query 902 ATCGACCAAGTGTGATACATACGCCACATGTGGCCAATTCGCTAGTTGCAGATTCAATCC 961
|||||| |||||||||||||| |||||||||||||||||||||||||||| |||||||
Sbjct 900 ATCGACAAAGTGTGATACATATGCCACATGTGGCCAATTCGCTAGTTGCAAATTCAATTA 959
Query 962 CGGGTCGACTCCGCCTTGCATGTGCATTAGAGGGTTTAAGCCACAGAGTTACGCGGAGTG 1021
|||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 960 CGGGTCAACTCCGCCTTGCATGTGCATTAGAGGGTTCAAGCCACAGAGTTACGCGGAGTG 1019
Query 1022 GAACAACGGAAACTGGACTCAGGGATGCGTAAGAAAGGCACCATTGCAGTGCGAAAGTCG 1081
||| |||||||||||||||||||||||||||||||||| ||||||||||||||||| ||
Sbjct 1020 GAAGAACGGAAACTGGACTCAGGGATGCGTAAGAAAGGTGCCATTGCAGTGCGAAAGACG 1079
Query 1082 AGACAACAACGATGGAAGTAGAAAAAGTGATGGATTTGTGAGAGTGCAAAAGATGAAAGT 1141
||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 1080 AGACAACAACGATAGAAGTAGAAAAAGTGATCGATTTGTGAGAGTGCAAAAGATGAAAGT 1139
Query 1142 GCCCCACAATCCACAACGATCTGGAGCCAATGAACAAGACTGTCCTGAGAGCTGTCTGAA 1201
||||||||||||||||||||||||||| ||||||||||||||||||| || |||||||||
Sbjct 1140 GCCCCACAATCCACAACGATCTGGAGCAAATGAACAAGACTGTCCTGGGAACTGTCTGAA 1199
Query 1202 GAACTGTTCTTGTACGGCTTACTCATTCGACAGAGGGATTGGTTGTCTTCTTTGGAGCGG 1261
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 1200 GAACTGTTCTTGTACGGCTTACTCATTCGACAGAGGGATTGGGTGTCTTCTTTGGAGCGG 1259
Query 1262 AAACTTGATGGATATGCAGGAGTTTTCTGGCACTGGCGTGGTTTTTTACATTCGTCTTGC 1321
|||||||||||||||||| |||||||| |||||||| |||||||||||||||||||| ||
Sbjct 1260 AAACTTGATGGATATGCAAGAGTTTTCGGGCACTGGTGTGGTTTTTTACATTCGTCTCGC 1319
Query 1322 AGATTCAGAGTTTAAAAAGCGGACCAATCGGTCAATTGTGATCACAGTAACTTTGCTAGT 1381
||||||||| || |||| || ||||||||| | |||||||||||||||||||||||||||
Sbjct 1320 AGATTCAGAATTCAAAACGCCGACCAATCGATTAATTGTGATCACAGTAACTTTGCTAGT 1379
Query 1382 AGGCGCTTTTTTGTTTGCAGGGACTGTTGTCTTAGCACTGTGGAAGATCGCTAAGCATAG 1441
||| |||||||||||||||| ||||||||||||||||||||||||||||| |||||||||
Sbjct 1380 AGGTGCTTTTTTGTTTGCAGTGACTGTTGTCTTAGCACTGTGGAAGATCGTTAAGCATAG 1439
Query 1442 AGAGAAGAACAGAAACACAAGGCTACTTAATGAGAGAATGGAAGCTTTAAGTAGTAATGA 1501
||||||||||||||||||||||||||| ||||||||||||||||||||| |||||| |||
Sbjct 1440 AGAGAAGAACAGAAACACAAGGCTACTGAATGAGAGAATGGAAGCTTTATGTAGTAGTGA 1499
Query 1502 CGTTGGTGCAATCCTTGTGAATCAATACAAGCTTAAAGAGCTACCACTGTTCGAGTTCCA 1561
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 1500 CGTTGGTGCAATCCTTGTGAATCAATACAAGCTTAAAGAGCTACCACTGTTCAAGTTCCA 1559
Query 1562 AGTGTTAGCAGTGGCGACCAACAATTTTTCTATCACAAACAAGCTCGGACAAGGAGGATT 1621
|||||||||||||||||| |||||||||| ||||||||||| |||||||||||||||||
Sbjct 1560 AGTGTTAGCAGTGGCGACTGACAATTTTTCAATCACAAACAAACTCGGACAAGGAGGATT 1619
Query 1622 TGGTGCTGTTTACAAGGGGAGGTTACAAGAAGGGCTCGATATCGCTGTGAAGAGGCTTTC 1681
||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||
Sbjct 1620 TGGTGCTGTTTACAAGGGGAGGTTACAAGAAGGGCAAGAGATCGCTGTGAAGAGGCTTTC 1679
Query 1682 GCGAACATCGGGACAAGGAGTCGAGGAGTTTGTGAATGAAGTGGTCGTGATCTCAAAGCT 1741
|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
Sbjct 1680 GCGAACATCGGGACAAGGAGTCGAGGAGTTTGTGAATGAAGTGGTCGTGATCTCTAAGTT 1739
Query 1742 GCAACACCGGAATCTCGTGAGATTGCTTGGTTTCTGCATTGAAGGAGAAGAGAGGATGTT 1801
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1740 GCAACACCGGAATCTCGTGAGATTGCTTGGTTTCTGCATTGAAGGAGAAGAGAGGATGTT 1799
Query 1802 GGTCTATGAGTTCATGCCAGAGAATTGTTTAGACGCATATCTATTTGACCCGGTGAAGCA 1861
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 1800 GGTCTATGAGTTCATGCCAGAGAATTGTTTAGACGCATTTCTATTTGACCCGGTGAAGCA 1859
Query 1862 AAGACTTCTTGACTGGAAGACGCGGTTTAACATAATCGATGGGATTTGCAGAGGTCTTAT 1921
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1860 AAGACTTCTTGACTGGAAGACGCGGTTTACCATAATCGATGGGATTTGCAGAGGTCTTAT 1919
Query 1922 GTACCTTCACAGAGATTCAAGGCTGAAGATCATACACAGAGATCTAAAAGCAAGCAATAT 1981
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 1920 GTACCTTCACAGAGATTCAAGGCTGAAGATCATACACAGAGATTTAAAAGCAAGCAATAT 1979
Query 1982 TTTGTTAGATGAGAATCTAAACCCGAAGATATCCGACTTTGGGCTGGCTAGGATTTTCCA 2041
||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 1980 CTTGTTAGATGAGAATCTAAACCCGAAGATATCCGATTTTGGGCTGGCTAGGATTTTCCA 2039
Query 2042 GGGGAATGAGGATGAAGTAAGCACCGTAAGAGTGGTTGGAACATACGGTTATATGGCACC 2101
||||||||||||||||| || |||| ||||||||||||||||||||||||||||||||||
Sbjct 2040 GGGGAATGAGGATGAAGCAAACACCCTAAGAGTGGTTGGAACATACGGTTATATGGCACC 2099
Query 2102 CGAATATGCAATGGGAGGGTTGTTCTCAGAGAAATCTGACGTTTTCAGCTTAGGAGTCAT 2161
||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 2100 TGAATACGCAATGGGAGGGTTGTTCTCAGAGAAATCTGATGTTTTCAGCTTAGGAGTCAT 2159
Query 2162 ACTCTTAGAGATTGTGAGTGGAAGAAGAAACTCAAGCTTTTACAATGATGGGCAGAATCC 2221
||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 2160 ACTTTTAGAGATTGTGAGTGGAAGAAGAAACTCAAGCTTTTACAATGATGAGCAGAATCC 2219
Query 2222 AAATCTTTCAGCTTATGCATGGAAACTCTGGAAC-ACCGGGGAAGATATTGCTCTTGTGG 2280
|||||||||||||||||||||||||||||||||| || ||||||||||||||||| ||||
Sbjct 2220 AAATCTTTCAGCTTATGCATGGAAACTCTGGAACGAC-GGGGAAGATATTGCTCTCGTGG 2278
Query 2281 ATCCGGTCATCTTTGAAGAGTGTTTTGAAAATGAAATACGCAGATGTGTGCACGTAGGAC 2340
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 2279 ATCCGGTCATCTTTGAAGAGTGTTTTGAAAATGAAATACGCAGATGTGTGCACATAGGAC 2338
Query 2341 TATTGTGTGTACAAGATCACGCAAATGATAGGCCGAGCGTTGCAACGGTGATTTGGATGC 2400
| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 2339 TCTTGTGTGTACAAGATCACGCAAATGATAGACCGAGCGTTGCAACGGTGATTTGGATGC 2398
Query 2401 TAAGTAGCGAGAACTCAAACCTTCCAGAGCCAAAGCAACCTGCATTTATACCTAGAAGGG 2460
|||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||
Sbjct 2399 TAAGTAGCGAGAACTCCAACCTTCCAGAGCCAAAGCAACCCGCATTTATACCTAGAAGGG 2458
Query 2461 GCACTTCAGAAGTTGAATCCTC-GGGACAAAGCGACCCAAGAGCATCGATCAACAATGTG 2519
||||||||||||||| |||||| ||| |||||||||||||| || || || |||||||||
Sbjct 2459 GCACTTCAGAAGTTGCATCCTCAGGG-CAAAGCGACCCAAGTGCGTCAATGAACAATGTG 2517
Query 2520 AGCCTCACAAAAATAACAGGACGTTAGCTCTGTAAGTGAGATAAACCTACTGCTAAAGAA 2579
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 2518 AGCCTCACAAAAATAACAGGACGTTAGCTCTGTAAGTGAGATAAACCTACTACTAAAGAA 2577
Query 2580 TTTTGATGAAAAAATGTTTAAGTTGTATATCTGTAT 2615
|||| |||| | | || |||| ||||| |||| |||
Sbjct 2578 TTTTTATGACAGATTGATTAAATTGTACATCTATAT 2613
> Ahg910891 jgi|Araly1|910891|Al_scaffold_0001_1145
Length=2502
Score = 1325 bits (717), Expect = 0.0
Identities = 1020/1165 (88%), Gaps = 25/1165 (2%)
Strand=Plus/Plus
Query 1390 TTTTGTTTGCAGGGACTGTTGTCTTAGCACTGTGGAAGATCGCTAAGCATAGAGAGAAGA 1449
||||| | || | || |||| ||||||||||| | ||| | || |||||||||||||| |
Sbjct 1353 TTTTG-TCGCTGTGATTGTTCTCTTAGCACTGCGAAAGTTGGCAAAGCATAGAGAGAAAA 1411
Query 1450 ACAGAAACACAAGGCTACT-TAATGAGAGAATGGAAGCTTTAAGTAGTAATGACGT-TGG 1507
|||||||||||||| |||| | |||||| ||||||||||||| || ||| || || |||
Sbjct 1412 ACAGAAACACAAGGGTACTGT-TTGAGAGGATGGAAGCTTTAAATAATAACGA-GTCTGG 1469
Query 1508 TGCAATCCTTGTGAATCAATACAAGCTTAAAGAGCTACCACTGTTCGAGT-TCCAAGTGT 1566
||||| | |||||||||| |||||||||||||||||||| ||||||||| | ||| |||
Sbjct 1470 AGCAATACGTGTGAATCAAAACAAGCTTAAAGAGCTACCATTGTTCGAGTAT-CAAATGT 1528
Query 1567 TAGCAGTGGCGAC-CAACAATTTTTCTATCACAAACAAGCTCGGACAAGGAGGATTTGGT 1625
|||| | || || || ||||| ||||||||||||||||||| ||||||| ||||||
Sbjct 1529 TAGCTGCAGCAACTGAA-AATTTCGCTATCACAAACAAGCTCGGGGAAGGAGGCTTTGGT 1587
Query 1626 GCTGTTTACAAGGGGAGGTTACAAGAAGGGCTCGATATCGCTGTGAAGAGGCTTTCGCGA 1685
| ||||||||||||| |||| |||||||| || ||||||||||||||||| || |||
Sbjct 1588 TCCGTTTACAAGGGGAAATTACGAGAAGGGCAAGAGATCGCTGTGAAGAGGCTCTCACGA 1647
Query 1686 ACATCGGGACAAGGAGTCGAGGAGTTTGTGAATGAAGTGGTCGTGATCTCAAAGCTGCAA 1745
|| || ||||||||| |||| |||||||||||||| |||||||||||||| ||| |||||
Sbjct 1648 ACGTCTGGACAAGGACTCGAAGAGTTTGTGAATGAGGTGGTCGTGATCTCTAAGTTGCAA 1707
Query 1746 CACCGGAATCTCGTGAGATTGCTTGGTTTCTGCATTGAAGGAGAAGAGAGGATGTTGGTC 1805
|||||||| ||||| ||||||||||| |||||||| ||||||||||| |||||| |||||
Sbjct 1708 CACCGGAACCTCGTCAGATTGCTTGGATTCTGCATAGAAGGAGAAGAAAGGATGCTGGTC 1767
Query 1806 TATGAGTTCATGCCA-GAGAATTGTTTAGACGCATATCTATTTGACCCGGTGAAGCAAAG 1864
|||||||| |||||| || |||| ||| || |||||||||||||||||||||||||||||
Sbjct 1768 TATGAGTTTATGCCAGGA-AATTCTTTGGATGCATATCTATTTGACCCGGTGAAGCAAAG 1826
Query 1865 ACTTCTTGACTGGAAGACGCGGTTTAACATAATCGATGGGATTTGCAGAGGTCTTATGTA 1924
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1827 ACTTCTTGACTGGAAGACGCGGTTTAACATAATCGATGGGATTTGCAGAGGTCTGATGTA 1886
Query 1925 CCTTCACAGAGATTCAAGGCTGAAGATCATACACAGAGATCTAAAAGCAAGCAATATTTT 1984
|||||||||||||||||| |||| ||||||||| ||||||||||| || |||||||| ||
Sbjct 1887 CCTTCACAGAGATTCAAGACTGAGGATCATACATAGAGATCTAAAGGCCAGCAATATCTT 1946
Query 1985 GTTAGATGAGAATCTAAACCCGAAGATATCCGACTTTGGGCTGGCTAGGATTTTCCAGGG 2044
||||||||| |||||||||||||||||||| || |||||||| || || ||||||| |||
Sbjct 1947 GTTAGATGAAAATCTAAACCCGAAGATATCTGATTTTGGGCTCGCCAGAATTTTCCGGGG 2006
Query 2045 GAATGAGGATGAAGTAAGCACCGTAAGAGTGGTTGGAACATACGGTTATATGGCACCCGA 2104
|||||| ||||||| ||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 2007 GAATGAAGATGAAGCAAGCACCCTAAGAGTGGTTGGAACATACGGTTATATGGCACCCGA 2066
Query 2105 ATATGCAATGGGAGGGTTGTTCTCAGAGAAATCTGACGTTTTCAGCTTAGGAGTCATACT 2164
||| ||| |||||||||| ||||| |||||||| || |||||||||||||||||||||||
Sbjct 2067 ATACGCACTGGGAGGGTTATTCTCGGAGAAATCCGATGTTTTCAGCTTAGGAGTCATACT 2126
Query 2165 CTTAGAGATTGTGAGTGGAAGAAGAAACTCAAGCTTTTACAATGATGGGCAGAATCCAAA 2224
|||||||||||||||||| ||||||||||||||||| |||||||||| |||||||| |||
Sbjct 2127 CTTAGAGATTGTGAGTGGGAGAAGAAACTCAAGCTTCTACAATGATGAGCAGAATCTAAA 2186
Query 2225 TCTTTCAGCTTATGCATGGAAACTCTGGAAC-ACCGGGGAAGAT-ATTGCTCTTGTGGAT 2282
|||||||||||||||||||||||| |||||| | |||||| || || ||||||||||||
Sbjct 2187 TCTTTCAGCTTATGCATGGAAACTATGGAACGAT-GGGGAA-ATTATCGCTCTTGTGGAT 2244
Query 2283 CCGGTCATCTTTGAAGAGTGTTTTGAAAATGAAATACGCAGATGTGTGCACGTAGGACTA 2342
|| |||| | |||| |||||||||| |||||||||||||||||| |||||| |||||||
Sbjct 2245 CCAGTCAACCTTGACGAGTGTTTTGCAAATGAAATACGCAGATGCGTGCACATAGGACTG 2304
Query 2343 TTGTGTGTACAAGATCACGCAAATGATAGGCCGAGCGT-TGCAACGGTGATTTGGATGCT 2401
||||||||||||||||| ||||||||||| |||||||| | |||| ||||||||||||||
Sbjct 2305 TTGTGTGTACAAGATCATGCAAATGATAGACCGAGCGTGT-CAACCGTGATTTGGATGCT 2363
Query 2402 -AAGTAGCGAGAACTCAAACCTTCCAGAGCCAAAGCAACCTGCATTTATACCTAGAAGGG 2460
|| || || || ||||||||||| |||||||||||||| ||||||||| |||||||||
Sbjct 2364 TAAC-AGTGAAAATTCAAACCTTCCCGAGCCAAAGCAACCCGCATTTATAGCTAGAAGGG 2422
Query 2461 GCACTTCAGAAGTTGAATCCTCGGGACAAAGCGACCCAAGAGCATCGATCAACAATGTGA 2520
|| || |||| | |||||| |||||| |||| ||||||||| |||||||||| ||
Sbjct 2423 GCTCTCCAGACGCTGAATC------ACAAAGTGACCAAAGAGCATCCATCAACAATGCGA 2476
Query 2521 GCCTCACAAAAATAACAGGACGTTA 2545
|| ||||| |||| || ||||||||
Sbjct 2477 GCTTCACAGAAATCACTGGACGTTA 2501
Score = 881 bits (477), Expect = 0.0
Identities = 1035/1295 (80%), Gaps = 75/1295 (6%)
Strand=Plus/Plus
Query 70 TTCTTCTTCTTACATTGAT-TTGCTTTTCCTTGAGGCTT-TGTTTGGCTACTGATGTAAT 127
||||| || |||||||| | || ||| || |||| | || ||||||||| ||||| |
Sbjct 14 TTCTTATTGTTACATTG-TCTTTCTTCTCTTTGA-GATTATGTTTGGCTGGGGATGTTGT 71
Query 128 CACGTTTTCTAGCGAGTTCAGGGACTCTGAGACTG-TCGTCTCCAACCACAGCACCTTCA 186
| |||| |||| |||| ||| |||||| || || | |||||||| | | |||||| ||||
Sbjct 72 CTCGTTCTCTACCGAGCTCAAGGACTCGGAAAC-GCTCGTCTCCGATCGCAGCACTTTCA 130
Query 187 GGTTTGGTTTCTTCAGCCCGGTTAACTCCACAG-GACGTTATGCAGGGATATGGTTCAAT 245
|||||||||| ||||| || ||||||||||| | | || || ||||||||||||||||||
Sbjct 131 GGTTTGGTTTTTTCAGTCCAGTTAACTCCAC-GAGTCGCTACGCAGGGATATGGTTCAAT 189
Query 246 AATA-TTC--CTGT-TCAAACCGTGGTTTGGGTAGCAAACAGTA-ACAGCCCGATCAATG 300
|| | ||| | || | || ||||||||||||||||||| | |||||| |||||||
Sbjct 190 AAAATTTCTGCAGTGGC-TTCCATGGTTTGGGTAGCAAACAG-AGGCAGCCCTATCAATG 247
Query 301 ACTCTTCCGGAATGGTT-TCCATATCCAAGGAAGGGAATCTTGTTG-TTATGGATGGTCG 358
||||||| ||| || || | ||| |||| || |||||||| | || ||| ||| |||||
Sbjct 248 ACTCTTCTGGAGTGATTGT-GATAGCCAAAGACGGGAATCTCG-TGATTAAGGACGGTCG 305
Query 359 CGGACAGGTTCACTGGTCCACCAATGTCTTGGTGCCGGTGGCTGCTAACACCTTC-TATG 417
|||||| |||||||||||||| ||||||| || || |||||||||||| | ||||
Sbjct 306 CGGACATGTTCACTGGTCCACGAATGTCTCACAACCAGTAGCTGCTAACACC-ACATATG 364
Query 418 CCCGG-TTGCTGAATACAGGGAACCTCGTGCTGCTAGGAACTACTAATACTGGGGATGAG 476
| || || |||||||||||||||||||| |||| ||||| | | || | ||||||| ||
Sbjct 365 CAAGGCTT-CTGAATACAGGGAACCTCGTACTGCAAGGAATTTCAAACAGTGGGGATAAG 423
Query 477 ATTCTTTGGGAGAGCTTT-GAGCATCCTCAAAACATATATT--TGCCAACAATGAGT-CT 532
||||| |||||||| ||| |||||||||| ||| || ||| |||||||||||| | ||
Sbjct 424 ATTCTGTGGGAGAG-TTTCGAGCATCCTC-AAA-ATGCATTCATGCCAACAATGA-TACT 479
Query 533 TGCTACTGACACGAA-AACAGGCAGGAGCCTTAAGCTAAGATCTTGGAA-AAGCCCGTT- 589
| ||||||| | || ||| || |||||||||||||| ||||| ||||| || |||||
Sbjct 480 TTCTACTGATGC-AAGAACGGGAAGGAGCCTTAAGCTTAGATCGTGGAATAA--CCGTTC 536
Query 590 TGATCCATCGCCTGGACGATACTCTGCAGGTTTGATTCCTCTGCCATTTCCAGAACTTGT 649
|||||| ||||||||||| |||||||| ||| ||||| |||| |||||||| || ||||
Sbjct 537 TGATCCTTCGCCTGGACGCTACTCTGCTGGTATGATTTCTCTACCATTTCCGGAGCTTGC 596
Query 650 TGTCTGGAAAGATGATCTTCTGATGTGGCGTAGCGGTCCATGGAATGGTCAATACTTCAT 709
||||||||||||||||| || ||||||||||||| || ||||||||||||||||| ||
Sbjct 597 CATCTGGAAAGATGATCTTATGGTGTGGCGTAGCGGCCCGTGGAATGGTCAATACTTTAT 656
Query 710 TGGGTTACCA-AATATGGATTACCGTATCAATCTTTTCGAGTTAACCCTTAG-TAGTGAC 767
||| ||||| ||| |||||| | || ||| ||||| |||||| |||| ||| || ||||
Sbjct 657 TGGACTACCAGAAT-TGGATTTCGGTGTCAGTCTTTACGAGTTTACCC-TAGCTAATGAC 714
Query 768 AATCGAGGATCTGTCTCCATGTCCTATGCTGGAA--AT-ACTTTGTTGTATCATTTTCTC 824
|| |||||||| ||||||||||| ||| || || || || | | ||||||||||| ||
Sbjct 715 AACCGAGGATCCGTCTCCATGTCATATACT--AATTATGAC-TCGCTGTATCATTTTTTC 771
Query 825 TTGGACTCCGA-AGG-AAGCGTGTTTCAGAGAGATTGGAACGTGGCTATCCAAGAATGGA 882
||||||||||| || | ||| | | ||| | | |||| || | || ||||||||||
Sbjct 772 TTGGACTCCGACGGGTATGCG-G-TGGAGAAATACTGGAGCGAAGTTAAGCAAGAATGGA 829
Query 883 AGACCTGGTTA-AAGGTCCCATCGACCAAGTGTGATACATACGCCACATGTGGCCAATTC 941
|||| || || | | ||||| | || ||||||| ||| | | |||||||||||||
Sbjct 830 GGACCGGGATACTA-TTTCCATC-A--AATTGTGATATATATGGTAAATGTGGCCAATTC 885
Query 942 GCTAGTTGCAGATTCAATCCCGGGTCGACTCCGCCTTGCATGTGCATTAGAGGGTTTAAG 1001
|| |||||| ||||||||| | || ||| ||||||| |||||||||||||||| |
Sbjct 886 GCCAGTTGC-----CAATCCCGGTTAGA-TCCACCTTGCAAGTGCATTAGAGGGTTTGAC 939
Query 1002 CCACAGAGTTACGCGGAGTGGAACA-ACGGAAACTGGACTCAGGGATGCGTAAGAAAG-G 1059
|| | |||||| || |||||||||| | |||||||||||||||||||||||||||||| |
Sbjct 940 CCGCGGAGTTATGCAGAGTGGAACAGA-GGAAACTGGACTCAGGGATGCGTAAGAAAGAG 998
Query 1060 CACCATTGCAGTGCGAAAGTCGAGACAACAACGATGGAAGTAGAAAAAGTGATGGATTTG 1119
|| |||||||| || || ||||||| || |||||||||| | ||||||| |||
Sbjct 999 G-CCGTTGCAGTGTGAGAGACGAGACAGTAA---TGGAAGTAGAGAGGGTGATGGGTTTT 1054
Query 1120 TGAGAGTGCAAAAGATGAAAGTGCCCCACAATCCACAACGATCTGGAGCCAATGAACAAG 1179
||||| || ||||||||||||||||| |||||||||| ||||||| || || |||||||
Sbjct 1055 TGAGATTGAAAAAGATGAAAGTGCCCAACAATCCACAGCGATCTGAAGTCAGCGAACAAG 1114
Query 1180 ACTGTCCTGAGA-GCTGTCTGAAGAACTGTTCTTGTACGGCTTACTCAT-TCGACAGAGG 1237
| ||||||| || |||||||||| |||||||||||||||||||||| | | | || |||
Sbjct 1115 AATGTCCTG-GAAGCTGTCTGAAAAACTGTTCTTGTACGGCTTACTTTTATGGCCA-AGG 1172
Query 1238 GATTGGTTGTCTTCTTTGGAGCGGAAACTTGATGGATATGCAGGAGTTTTCTGG-CACTG 1296
||| ||||||||||| ||||| ||||||||||| ||||||||||||| | ||| | |||
Sbjct 1173 GATGGGTTGTCTTCTCTGGAGTGGAAACTTGATCGATATGCAGGAGTATG-TGGGCTCTG 1231
Query 1297 GCGTGGTTTTTTACATTCGTCTTGCAGATTCAGAG 1331
|||| | ||||||| || || |||| |||||||
Sbjct 1232 GCGTTCCTCTTTACATCCGGCTGGCAGGTTCAGAG 1266
> Ahg471269 jgi|Araly1|471269|fgenesh2_kg.1__1223__AT1G11330.1
Length=2881
Score = 654 bits (354), Expect = 0.0
Identities = 1599/2174 (74%), Gaps = 190/2174 (9%)
Strand=Plus/Plus
Query 473 TGAGATTCTTTGGGAGAGCTTTGAGCATCCTCAAAACATATATT--TGCCAACAATGAGT 530
||||||||| |||||||| ||| |||||||| | | | | || |||||| ||||| |
Sbjct 610 TGAGATTCTATGGGAGAGTTTTAAGCATCCTTATGA-TTCT-TTCATGCCAAGAATGACT 667
Query 531 CTT-GCTACTGACACG-AAAACAGGCAGGAGCCTTAAGCTAAGATCTTGGAAAAGCCCGT 588
||| || || ||| | | ||| || ||| || ||||| | ||||||| ||| || |
Sbjct 668 CTTGGC-ACCGAC-GGTAGAACTGGTGGGAATCTAAAGCTTACTTCTTGGACAAG-CCAT 724
Query 589 -TTGATCCATC-GCCTGG-ACGATACTCTGCAGGT-TTGATTCCTCTGC-CATTTCCAGA 643
|||||| || | || || ||| |||| ||| ||| |||| | | | ||||| ||
Sbjct 725 GATGATCCTTCAACAGGGAAC--TACACTGCTGGTATTG-CTCCT-TTCACGTTTCCTGA 780
Query 644 ACTTGTTGTCTGGAAAG-ATGATCTTCTGATGTGGCGTAGCGGTCCATGGAATGGTCA-A 701
||| || ||||| ||| | ||| ||| | ||||||||||| || ||||| || ||
Sbjct 781 GCTTCTTATCTGG-AAGAACGATGTTCCAACATGGCGTAGCGGACCGTGGAACGGGCAGG 839
Query 702 TACTTCATTGGGTTACCAAATATGGATTAC-CGTATCAATCTT-TTCGAG-TTAACCCTT 758
| |||||||| ||||| |||||||||| | | | | |||| | | | |||| |||
Sbjct 840 T-TTTCATTGGTTTACCGAATATGGATT-CACTTCTGTTTCTTGAT-GGGTTTAA-TCTT 895
Query 759 AGTAGTGACAATCGA-GGATCTG-TCTCCATGTCCTATGCTGGAA--ATACTTTGTTGTA 814
| |||||| |||| | ||| | | | || ||||| |||||| || || | || ||||
Sbjct 896 AATAGTGATAATCAAGGGA-C-GATTTCAATGTCTTATGCT--AATGATTCGTTCATGTA 951
Query 815 TCATTTTCTCTTGGACTCC-GAAGGAAGCGTGTT-TCAGAGAGATTGGAACGTGGCTATC 872
||| ||| |||||| ||| ||||||| | || ||||| ||||||| | || || |
Sbjct 952 TCACTTTAACTTGGA-TCCTGAAGGAATTAT-TTATCAGAAAGATTGG-A-GTACCTCTA 1007
Query 873 CAAGAA--TGGAAGACCTGGT-TAAAGGTCCCATCGAC-CA-AGTGTGATACATACGCCA 927
|||| |||| || |||| ||||| | |||| || || | |||||| |||||| |
Sbjct 1008 TGAGAACTTGGAGGA-TTGGTGTAAAGTTTCCAT--ACACAGACTGTGATGCATACGGTA 1064
Query 928 CATGTGGCCAATTCGCTAGTTGCAGATTCAATCCCGGGTCGACTCCGCCTTGCATGTGCA 987
|||||| | || || | | || | | | ||||| | ||||||||| | |||
Sbjct 1065 GATGTGGTCGATACG---G--G-AGCTGCCGTGCCGGGGAAAATCCGCCTTGTAAATGCG 1118
Query 988 TTAGAGGGTTT-AAGCCACAGAGTTACGCGGAGTGGAACAACGGAAACTGGACTCAGGGA 1046
||| ||||||| | ||| ||| | || | |||||||| || ||||||| | | |||
Sbjct 1119 TTAAAGGGTTTGTA-CCAAAGAATAACACCGAGTGGAATGGTGGGAACTGGAGTAATGGA 1177
Query 1047 TGCGTAAGAAAGGCACCATTGCAGTGCGAAAGTC-GAG--A--CAA-CAACGATGGAAGT 1100
|| || ||||| || ||||||||||| ||||| | ||| | || |||| ||| ||
Sbjct 1178 TGTGTGAGAAAAGCTCCATTGCAGTGTGAAAGACAGAGAAATGTAAGTAACGGTGGTGGT 1237
Query 1101 --AGAAAAAG-TGATGGATTTGTGAGAGTGCAAAAGATGAAAGTGCCCCA-CAATCCACA 1156
| ||||| ||||| ||| ||| | |||| |||||||||||| || | | || | |
Sbjct 1238 GGTGGAAAAGCAGATGGGTTTTTGAAACTGCAGAAGATGAAAGTG-CCAATCTATGCGGA 1296
Query 1157 ACGATCTGGAGCCAATGAACAAGACTGTCCTGAGAG-CTGTCTGA-AGAACTGTTCTTGT 1214
||| |||| ||| |||||||||| |||||| | || |||| | | | |||||||||||
Sbjct 1297 ACGGTCTGAAGCTAATGAACAAGTTTGTCCT-AAAGTCTGT-TTAGATAACTGTTCTTGC 1354
Query 1215 ACGGCTTACT-CATT-CGACAGAGGGATTGGTTGTC-TTCTTTGGAGCGGAAACTTGA-T 1270
|||||||| | | || |||||||| || ||||| | | |||||||| || | || | |
Sbjct 1355 ACGGCTTA-TGC-TTATGACAGAGGAATCGGTTG-CATGCTTTGGAGTGGTGA-TTTAGT 1410
Query 1271 GGATATGC-AGGAGTTTTCT-GGCACTGGC-GTGGT-TTTTTACATTCGTCTTGCAG-AT 1325
||||||| | | |||| | || | |||| || | | ||| ||||| |||| | ||
Sbjct 1411 TGATATGCAATCA-TTTT-TGGGAAGTGGCATTGATCTCTTT--ATTCGAGTTGC-GCAT 1465
Query 1326 TCAGAGTTTAAAA-AGCGGACCAATC-GGTCAATTGTGATCACAGTAACTTTGCTAGTAG 1383
||||| | |||| | | | ||||| | ||||| ||||| ||| | || || | |||
Sbjct 1466 TCAGAACTCAAAACA-CAAAGCAATCTAG-CAATTATGATCGCAGCACCTGTG--A-TAG 1520
Query 1384 GCGCTT-TTTTGTTTGCAG-GGAC--TGTTGTCTTAGCACTG-TGGAAGA-TC-GCTAAG 1436
||| || | || |||| | || | |||| | |||||| || |||| | || | |||
Sbjct 1521 GCG-TTGTGTTAATTGCTGCGGTCTGTGTTCTTTTAGCA-TGCCGGAA-ATTCAG-AAAG 1576
Query 1437 CAT--AG----AGAG-AAGAACAGAAACACAAG-GCTACT-TAATGAGAGAATGGAAG-- 1485
| | || || | ||| | |||| | || |||| | | | ||||||||||||
Sbjct 1577 CGTCCAGCTCCAGCGAAAG-ATAGAAGTGC-AGAGCTAATGT-TTAAGAGAATGGAAGCA 1633
Query 1486 CTT-TAAGTAG-TAATGACGTTGGTGCAATCCTTGTGAATC-AATACAAGCTTAAAGAGC 1542
||| |||| | |||||| || | | ||| | || | |||| ||||| || ||||
Sbjct 1634 CTTACAAGT-GATAATGA-----GT-C--TGCTTCT-AACCAAATA-AAGCTCAAGGAGC 1682
Query 1543 TACCACTGTTCGAGTTCCAAGTGTTAGC-AGTGGCGACCAACAATTTTTCTATCACAAAC 1601
| ||||| || ||||| ||||||||||| | || ||| | | || ||| | | ||||
Sbjct 1683 TTCCACTCTTTGAGTTTCAAGTGTTAGCTA-CAGCAACCGATAGCTTCTCTCTAAGAAAC 1741
Query 1602 AAGCTCGGACAAGGAGGATTTGGTGCTGTTTACAAGGGGAGGTTACAAGAAGGGCTCGAT 1661
|||||||| ||||| ||||||||| ||||||||||||| | |||| |||||| | ||
Sbjct 1742 AAGCTCGGGCAAGGCGGATTTGGTCCTGTTTACAAGGGAAAATTACCAGAAGGACAAGAA 1801
Query 1662 ATCGCTGTGAAGAGGCTTTC--GCGAACATCGGGACAAGGAGTCGAGGAGTTTGTGAATG 1719
|| || || |||||||| || | ||| ||| ||||||||| | ||||| || |||| |
Sbjct 1802 ATTGCAGTCAAGAGGCTCTCAAG-GAA-ATCAGGACAAGGACTAGAGGAACTTATGAACG 1859
Query 1720 AAGTGGTCGTGATCTCAAAGCTGCAACACCGGAATCTCGTG-AGATTGCTTGG-TTTCTG 1777
||||||| ||||| || ||| ||||||| |||||||| ||| || || ||||| | | ||
Sbjct 1860 AAGTGGTTGTGATATCGAAGTTGCAACATCGGAATCTAGTGAAG-TTACTTGGATGT-TG 1917
Query 1778 CATTGAAGGAGAAGAGAGGATGTTGGTCTATGAGT-TCATGCCAGAGAATTGTTTAGACG 1836
||||||||| ||||| || ||||| ||||| || | | |||||| |||| | || || |
Sbjct 1918 CATTGAAGGTGAAGAAAGAATGTTAGTCTACGAATAT-ATGCCAAAGAAAAGCTTGGATG 1976
Query 1837 CATATCTATTTGACCCGGTGAAGC-AAAGACTTCTTGACTGGAAGACGCGGTTTAACATA 1895
|||||||||||||||| |||||| ||| | ||||||| |||||||| |||| ||||||
Sbjct 1977 CATATCTATTTGACCCAATGAAGCAAAATA-TTCTTGATTGGAAGACTAGGTTCAACATA 2035
Query 1896 ATCGATGGGATTTGCAGAGGTCTTATGTACCTTCACAGAGATTCAAGGCTGAAGATCATA 1955
|| || || ||||||||||||||| |||||||||||||||||||||| || |||||||||
Sbjct 2036 ATGGAAGGAATTTGCAGAGGTCTTTTGTACCTTCACAGAGATTCAAGACTAAAGATCATA 2095
Query 1956 CACAGAGATCTAAAAGCAAGCAATATTTTGTTAGATGAGAATCTAAACCCGAAGATATCC 2015
||||||||| ||||||| ||||| |||||||||||||||||||||||||||||||||||
Sbjct 2096 CACAGAGATTTAAAAGCCAGCAACATTTTGTTAGATGAGAATCTAAACCCGAAGATATCT 2155
Query 2016 GACTTTGGG-CTGGCTAGGATTTTCCAGGG-GAATGAGGATGAAG-TAAGCACC-GTAAG 2071
|| ||| || || || || ||||||| ||| |||||| ||||||| ||| ||| | |||
Sbjct 2156 GA-TTTCGGACTTGCAAGAATTTTCC-GGGCGAATGAAGATGAAGCTAA-CACAAG-AAG 2211
Query 2072 AGTGGTTGGAACATACGGTTATATGGCACCCGAATATGCAATGGGAGGGTTGTTCTCAGA 2131
|| |||||||||||||| |||||| |||| ||||||||||||| ||| || || |||||
Sbjct 2212 GGTTGTTGGAACATACGGCTATATGTCACCGGAATATGCAATGGAAGGTTTCTTTTCAGA 2271
Query 2132 GAAATCTGACGTTTTCAGCTTAGGAGTCATACT-CTTAGAGATTGTGAGTGGAAGAAGAA 2190
||||| || ||||||||||| || || ||| | || |||||| | |||||||||||||
Sbjct 2272 AAAATCAGATGTTTTCAGCTTGGGGGTTATATTTCT-AGAGATCATAAGTGGAAGAAGAA 2330
Query 2191 ACTCAAGCTTTT-ACAATGATGGGCAGAATCCAAATCTTTCAGCTTATGCATGGAAACTC 2249
|||| || || | |||| || | | | |||| || |||| ||| |||| ||||| ||
Sbjct 2331 ACTCTAG-TTCTCACAAGGAAGAGAATAATCTGAACCTTTTGGCTCATGCGTGGAAGCTG 2389
Query 2250 TGGAAC-ACCGGGGAAGATA-TTGCTCTTGTGGATCCGGTCATCTTTGA-AGAGTGTTTT 2306
|||||| || || || | | || |||| | ||||| | | ||||||| | |||||||
Sbjct 2390 TGGAACGAC-GGTGAGGCTGCTT-CTCTAGCAGATCCAGCCGTCTTTGATA-AGTGTTTC 2446
Query 2307 GA-AAATGAAATACGCAGA--TGTGTGCACGTAGGACTATTGTGTGTACAAGATCACGCA 2363
|| ||| || ||| | ||| ||||| || | ||||| || ||||| ||||| |||
Sbjct 2447 GAGAAA-GAGATA-G-AGAAATGTGTTCATATTGGACTGTTATGTGTGCAAGAAGTTGCA 2503
Query 2364 AATGATAGGCCGAGCGTTGCAA-CGGTGATTTGGATGCTAAGTAGCGAGAAC-TCAAACC 2421
|| ||||| || | ||| ||| || |||| |||||||||| || ||||||| | || ||
Sbjct 2504 AACGATAGACCAAATGTTTCAAACG-TGATATGGATGCTAACTACCGAGAACATGAA-CC 2561
Query 2422 TT-CCAGAGCCAAAGCAACCTGCATTTATACCTA-GAAGGGGCA-CTTCAGAAGTTGAAT 2478
|| || || | ||||| || || |||||| || |||| || | |||| || | |||||
Sbjct 2562 TTGCC-GATACTAAGCAGCCAGCGTTTATAG-TAAGAAGAGG-AGCTTCTGAGGCTGAAT 2618
Query 2479 CCTCGGGACAA-AGCGACCCAAGAGC-ATCGATCAACAATGTGAGCCTCACAAAAATAAC 2536
| || | || | || | ||| || ||| ||||| ||||||| |||||| ||||
Sbjct 2619 CTTCAG-ACCAGAGT-AGTCAAAAGGTATCTATCAATGATGTGAGTCTCACAGCTGTAAC 2676
Query 2537 AGGACGTTA-GCTC 2549
||||||||| ||||
Sbjct 2677 AGGACGTTAAGCTC 2690
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 101091510230
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5