BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT1G11360.1 Length=1278 Score E Sequences producing significant alignments: (Bits) Value Ahg910892 jgi|Araly1|910892|Al_scaffold_0001_1146 1279 0.0 > Ahg910892 jgi|Araly1|910892|Al_scaffold_0001_1146 Length=822 Score = 1279 bits (692), Expect = 0.0 Identities = 779/822 (95%), Gaps = 2/822 (0%) Strand=Plus/Plus Query 190 ATGACTTCTCCGGGAAAATCTCCGAGATCCGACCGGAAATCACCGACGGTTGTCACCGTC 249 ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| Sbjct 1 ATGACTTCTCCGGGAAAATCTCCGAGATCCGACCGCAAATCACCGACGGTTGTCACCGTG 60 Query 250 CAGCCGTCTTCTCCCAGATTCCCGATCAGCACACCTACTGCTGGAGCTCAACGTAAGATC 309 |||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||| Sbjct 61 CAGCCGTCGTCTCCCAGATTCCCGATCGGCACACCTACTGCTGGAGCTCAACGTAAGATC 120 Query 310 GGGATCGCTGTCGATCTAAGCGACGAGAGTGCGTACGCAGTTCAATGGGCTGTTCAGAAC 369 ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| Sbjct 121 GGGATCGCTGTCGATCTTAGCGACGAGAGTGCGTACGCAGTTCAATGGGCTGTTCAGAAC 180 Query 370 TATCTCCGATCAGGTGACGCCGTTGTTCTCCTTCATGTTCAACCGACGAGTGTACTTTAC 429 ||||||||||||||||||||||| |||||||| || ||||||||||| |||||||||||| Sbjct 181 TATCTCCGATCAGGTGACGCCGTCGTTCTCCTCCACGTTCAACCGACAAGTGTACTTTAC 240 Query 430 GGCGCCGATTGGGGCGCTATGGATTTGTCGCCGCAGTGGGATCCAAATAACGAAGAGTCG 489 || |||||||||||||| || || ||||||||||||||||||| | ||||||||||| Sbjct 241 GGTGCCGATTGGGGCGCCATTGACCTGTCGCCGCAGTGGGATCCGGAGAACGAAGAGTCT 300 Query 490 CAGAGGAAGCTTGAGGACGATTTCGACATTGTCACTAATAAGAAAGCGAGCGACGTTGCT 549 |||||||||||||||||||||||||||||| |||| |||||||||||||| ||||||||| Sbjct 301 CAGAGGAAGCTTGAGGACGATTTCGACATTTTCACGAATAAGAAAGCGAGTGACGTTGCT 360 Query 550 CAGCCTTTGGTTGAGGCGGATATTCCGTTTAAGATCCATATCGTCAAGGATCACGATATG 609 ||||||||||||||||||||||||||||||||||| || ||||| ||||||||||||||| Sbjct 361 CAGCCTTTGGTTGAGGCGGATATTCCGTTTAAGATTCACATCGTGAAGGATCACGATATG 420 Query 610 AAGGAGAGGCTTTGTTTGGAGGTGGAGAGGTTAGGGCTAAGTACTTTGATTATGGGTAGT 669 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 421 AAGGAGAGGCTTTGTTTGGAGGTGGAGAGGTTAGGGCTAAGTACTTTGATTATGGGTAGC 480 Query 670 AGAGGATTTGGTGCTACGAAGAGGAGTAGTAAAGGGAGATTAGGGAGTGTCAGTGATTAC 729 |||||||||||||||||||||||||| || |||||||| ||||||||||| ||||||||| Sbjct 481 AGAGGATTTGGTGCTACGAAGAGGAGCAGCAAAGGGAGGTTAGGGAGTGTTAGTGATTAC 540 Query 730 TCAGTTCACCATTGTGCTTGTCCGGTGGTTGTTGTTAGATTTCCTGATGATAAGGATGGA 789 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 541 TCAGTTCACCATTGTGCTTGTCCGGTGGTTGTTGTTAGATTTCCTGATGATAAGGATGGA 600 Query 790 GAAGATGAGAAATCCGGCGACAGTGGTGGGGAGAATCTGATGGACAGTGATAAACTTCAT 849 |||||||||||||| ||||| |||||||||||||||||| |||| ||||||||||||||| Sbjct 601 GAAGATGAGAAATCTGGCGAAAGTGGTGGGGAGAATCTGGTGGAAAGTGATAAACTTCAT 660 Query 850 ACAGTGCCTGAGGTGGCTGAAGAAGAGGGAGATAAGGATGAGTACCATGATGCTTCGGAT 909 |||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||| Sbjct 661 ACAGTGCCTGAGGTGGCTGAGGAAGAGGGAGACAAGGATGAGTACCATGATGCTTCGGAT 720 Query 910 AAGCAGTAGCAGCA--AGGCTTTCATGTTGCAGAAGGAGACCTCCCTAAGGAGACTTAGA 967 |||||| ||||||| | |||| |||||||||||||||||||||||||||||||| |||| Sbjct 721 AAGCAGCAGCAGCATCAAGCTTCCATGTTGCAGAAGGAGACCTCCCTAAGGAGACATAGA 780 Query 968 AAGAAAAGAAAGCGTTCCTTTGCCCTTGGTTTGTGTTCTTGA 1009 | ||||||||||||||||| |||||||||||||||||||||| Sbjct 781 AGGAAAAGAAAGCGTTCCTATGCCCTTGGTTTGTGTTCTTGA 822 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 47768015001 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5