BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G11360.1
Length=1278
Score E
Sequences producing significant alignments: (Bits) Value
Ahg910892 jgi|Araly1|910892|Al_scaffold_0001_1146 1279 0.0
> Ahg910892 jgi|Araly1|910892|Al_scaffold_0001_1146
Length=822
Score = 1279 bits (692), Expect = 0.0
Identities = 779/822 (95%), Gaps = 2/822 (0%)
Strand=Plus/Plus
Query 190 ATGACTTCTCCGGGAAAATCTCCGAGATCCGACCGGAAATCACCGACGGTTGTCACCGTC 249
||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 1 ATGACTTCTCCGGGAAAATCTCCGAGATCCGACCGCAAATCACCGACGGTTGTCACCGTG 60
Query 250 CAGCCGTCTTCTCCCAGATTCCCGATCAGCACACCTACTGCTGGAGCTCAACGTAAGATC 309
|||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 61 CAGCCGTCGTCTCCCAGATTCCCGATCGGCACACCTACTGCTGGAGCTCAACGTAAGATC 120
Query 310 GGGATCGCTGTCGATCTAAGCGACGAGAGTGCGTACGCAGTTCAATGGGCTGTTCAGAAC 369
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 121 GGGATCGCTGTCGATCTTAGCGACGAGAGTGCGTACGCAGTTCAATGGGCTGTTCAGAAC 180
Query 370 TATCTCCGATCAGGTGACGCCGTTGTTCTCCTTCATGTTCAACCGACGAGTGTACTTTAC 429
||||||||||||||||||||||| |||||||| || ||||||||||| ||||||||||||
Sbjct 181 TATCTCCGATCAGGTGACGCCGTCGTTCTCCTCCACGTTCAACCGACAAGTGTACTTTAC 240
Query 430 GGCGCCGATTGGGGCGCTATGGATTTGTCGCCGCAGTGGGATCCAAATAACGAAGAGTCG 489
|| |||||||||||||| || || ||||||||||||||||||| | |||||||||||
Sbjct 241 GGTGCCGATTGGGGCGCCATTGACCTGTCGCCGCAGTGGGATCCGGAGAACGAAGAGTCT 300
Query 490 CAGAGGAAGCTTGAGGACGATTTCGACATTGTCACTAATAAGAAAGCGAGCGACGTTGCT 549
|||||||||||||||||||||||||||||| |||| |||||||||||||| |||||||||
Sbjct 301 CAGAGGAAGCTTGAGGACGATTTCGACATTTTCACGAATAAGAAAGCGAGTGACGTTGCT 360
Query 550 CAGCCTTTGGTTGAGGCGGATATTCCGTTTAAGATCCATATCGTCAAGGATCACGATATG 609
||||||||||||||||||||||||||||||||||| || ||||| |||||||||||||||
Sbjct 361 CAGCCTTTGGTTGAGGCGGATATTCCGTTTAAGATTCACATCGTGAAGGATCACGATATG 420
Query 610 AAGGAGAGGCTTTGTTTGGAGGTGGAGAGGTTAGGGCTAAGTACTTTGATTATGGGTAGT 669
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 421 AAGGAGAGGCTTTGTTTGGAGGTGGAGAGGTTAGGGCTAAGTACTTTGATTATGGGTAGC 480
Query 670 AGAGGATTTGGTGCTACGAAGAGGAGTAGTAAAGGGAGATTAGGGAGTGTCAGTGATTAC 729
|||||||||||||||||||||||||| || |||||||| ||||||||||| |||||||||
Sbjct 481 AGAGGATTTGGTGCTACGAAGAGGAGCAGCAAAGGGAGGTTAGGGAGTGTTAGTGATTAC 540
Query 730 TCAGTTCACCATTGTGCTTGTCCGGTGGTTGTTGTTAGATTTCCTGATGATAAGGATGGA 789
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 541 TCAGTTCACCATTGTGCTTGTCCGGTGGTTGTTGTTAGATTTCCTGATGATAAGGATGGA 600
Query 790 GAAGATGAGAAATCCGGCGACAGTGGTGGGGAGAATCTGATGGACAGTGATAAACTTCAT 849
|||||||||||||| ||||| |||||||||||||||||| |||| |||||||||||||||
Sbjct 601 GAAGATGAGAAATCTGGCGAAAGTGGTGGGGAGAATCTGGTGGAAAGTGATAAACTTCAT 660
Query 850 ACAGTGCCTGAGGTGGCTGAAGAAGAGGGAGATAAGGATGAGTACCATGATGCTTCGGAT 909
|||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||
Sbjct 661 ACAGTGCCTGAGGTGGCTGAGGAAGAGGGAGACAAGGATGAGTACCATGATGCTTCGGAT 720
Query 910 AAGCAGTAGCAGCA--AGGCTTTCATGTTGCAGAAGGAGACCTCCCTAAGGAGACTTAGA 967
|||||| ||||||| | |||| |||||||||||||||||||||||||||||||| ||||
Sbjct 721 AAGCAGCAGCAGCATCAAGCTTCCATGTTGCAGAAGGAGACCTCCCTAAGGAGACATAGA 780
Query 968 AAGAAAAGAAAGCGTTCCTTTGCCCTTGGTTTGTGTTCTTGA 1009
| ||||||||||||||||| ||||||||||||||||||||||
Sbjct 781 AGGAAAAGAAAGCGTTCCTATGCCCTTGGTTTGTGTTCTTGA 822
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 47768015001
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5