BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G11380.1
Length=1107
Score E
Sequences producing significant alignments: (Bits) Value
Ahg471274 jgi|Araly1|471274|fgenesh2_kg.1__1228__AT1G11380.1 1506 0.0
> Ahg471274 jgi|Araly1|471274|fgenesh2_kg.1__1228__AT1G11380.1
Length=1043
Score = 1506 bits (815), Expect = 0.0
Identities = 976/1051 (93%), Gaps = 21/1051 (2%)
Strand=Plus/Plus
Query 1 ACCAAAAAAGGTACAAAGTCCTTTGGGAGAAGATATCATCAAAGAGAAAAGCCCTAATTA 60
||||||||||||||||| |||||||||||||| || ||||||||||||| |||||| ||
Sbjct 1 ACCAAAAAAGGTACAAA-TCCTTTGGGAGAAG--AT-ATCAAAGAGAAAACCCCTAAATA 56
Query 61 AA--TCTC-----TCATCAATGGCGGATTTGGATAAACTC--GAG-GGTGGAGGAGGAGG 110
|| |||| ||||||||||||||||||||||||||| ||| || |||||||||||
Sbjct 57 AATCTCTCTTTTTTCATCAATGGCGGATTTGGATAAACTCGAGAGTGGAGGAGGAGGAGG 116
Query 111 AGGAGCCGTCGTAATCGCCGACATTAGAGCCGATGAAGGCGGAGGAGCGGTGGAGGAGAG 170
||||||||| | ||||| |||||||||||||| || ||||| ||||||||||| |||||
Sbjct 117 AGGAGCCGTTGAAATCGGTGACATTAGAGCCGACGACGGCGGCGGAGCGGTGGAAGAGAG 176
Query 171 GGAGAGGTTAACGGAACTTGAAGGAATTTCTGTGTTGGATTTCGATTTGCTTTGCTCAAC 230
|||||||||||||||||||||||| ||||||||| |||||||||||||||||||||| ||
Sbjct 177 GGAGAGGTTAACGGAACTTGAAGGGATTTCTGTGCTGGATTTCGATTTGCTTTGCTCGAC 236
Query 231 GGTTGCGCTTCAGACTCAGGGGAAATGGAGGAAGCTTGAGAGCTCGGAGGGAGAAGATGC 290
||||||||||||||||||||||||||||||||| ||||| |||||||| |||||||||||
Sbjct 237 GGTTGCGCTTCAGACTCAGGGGAAATGGAGGAAACTTGAAAGCTCGGAAGGAGAAGATGC 296
Query 291 GACGGAGGATGATTATGGCGGTGGCGTTTTACGGCTTTGGGAAGGCGATGTTATGGATTG 350
||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||
Sbjct 297 GACGGAGGATGATTATGGCGGCGGCGTTTTACGGCTCTGGGAAGGCGATGTTATGGATTG 356
Query 351 CTTTGAAGATCGTCATCTCTGTATCGAATCTGCTTGCTGTCCATGCTACAGATTCGGGAA 410
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 357 CTTTGAAGATCGTCATCTCTGTATCGAATCTGCTTGCTGTCCATGCTACAGATTCGGGAA 416
Query 411 AAACATGACAAGGACTGGTTTTGGTTCTTGCTTTCTTCAGGGTGCTGTTCATATGATTCT 470
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 417 AAACATGACAAGGACTGGTTTTGGTTCTTGCTTGCTTCAGGGTGCTGTTCATATGATTCT 476
Query 471 TATTGCCGGTTTCTTATTCAATGTTGTTGCTTTTGCTGTAACTAAGAGGCACTGCTTTCT 530
||||||||||||||||||||| |||| ||| |||||||||||||||||||||||||||||
Sbjct 477 TATTGCCGGTTTCTTATTCAACGTTGCTGCGTTTGCTGTAACTAAGAGGCACTGCTTTCT 536
Query 531 CTATCTGGCTATTGCTTTCGTTCTTTTGATTGGATCCTACTTGGGTTTCTTCCGTATGTT 590
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 537 CTATCTGGCTATTGCTTTCGTTCTTTTGATTGGATCCTACTTGGGTTTCTTCCGTATGCA 596
Query 591 GATAAGAAGGAAGTTTAATATTAGAGGTACTGATAGTTTCTTGGACGATTTTATCCACCA 650
|||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||
Sbjct 597 GATAAGAAGGAAGTTTAACATTAGAGGTACTGATAGTTTCTTGGACGATTGCATCCACCA 656
Query 651 TCTCGTATGTCCATTCTGTACATTAACTCAGGAATCTAAAACTCTGGAGATGAACAATGT 710
|||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 657 TCTCGTCTGTCCATTCTGTACATTAACTCAGGAATCGAAAACTCTGGAGATGAACAATGT 716
Query 711 TCATGATGGTATCTGGCATGGTCGAGGAGACACTCTATGTATAGGCGGCTATTCCGAAGG 770
|||||| |||||||||||||||||||||||||||||||| |||||||||||| |||||||
Sbjct 717 TCATGACGGTATCTGGCATGGTCGAGGAGACACTCTATGCATAGGCGGCTATCCCGAAGG 776
Query 771 AAAAGCTTTTCTCGAGCTGCATTCGCCTCCAGTTATTGCCTCAACAATGTCATCATCTCA 830
||||||||||||| || ||||||||||||||||||||| ||||||||||||||||||||
Sbjct 777 AAAAGCTTTTCTCAAGTTGCATTCGCCTCCAGTTATTGTATCAACAATGTCATCATCTCA 836
Query 831 ACCCTAACAACACACAACAGAGTT-CATTCACAGAAACCGCAACCAAGTTCTGTGGCCTC 889
|||||||||||||||||||||||| | || | |||||||||| || || |||| | | ||
Sbjct 837 ACCCTAACAACACACAACAGAGTTTCTTT-ATAGAAACCGCAGCCTAGGTCTGCG-CTTC 894
Query 890 CATAGCAA-TCTGCATTGGTGTCAACATCGGCTTATGGCAATTGATTTGCTCAACAGTGT 948
|||||||| | ||||||| | |||||||||||||||||| ||||||||||||||| ||||
Sbjct 895 CATAGCAAATTTGCATTGATCTCAACATCGGCTTATGGCGATTGATTTGCTCAACGGTGT 954
Query 949 AAACTGATTCATGTCAAGAGAAAACTTTCATGTTTAGTTTTGGAAACTGTGGTATATAGC 1008
|||| |||||||||||| ||||||||||||||||| ||||| |||||||||||||||||
Sbjct 955 AAACAGATTCATGTCAAAAGAAAACTTTCATGTTT-GTTTTCAAAACTGTGGTATATAGC 1013
Query 1009 AAACATGGAAGTTTGAT-AGAAATGTCCTGT 1038
||||||||||||||||| | ||| |||||||
Sbjct 1014 AAACATGGAAGTTTGATGAAAAA-GTCCTGT 1043
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 41248996194
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5