BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G11390.1
Length=2502
Score E
Sequences producing significant alignments: (Bits) Value
Ahg919955 jgi|Araly1|919955|scaffold_101236.1 3531 0.0
Ahg475162 jgi|Araly1|475162|fgenesh2_kg.2__292__AT1G61640.1 1164 0.0
> Ahg919955 jgi|Araly1|919955|scaffold_101236.1
Length=2151
Score = 3531 bits (1912), Expect = 0.0
Identities = 2078/2158 (96%), Gaps = 12/2158 (1%)
Strand=Plus/Plus
Query 304 TTTCTCACCATCTTCGTCGCTATGTCAAGAGTTT-TGATCTCTAAAATCGTTGGAAAGCA 362
|||||||||||||||||||||||||||||| ||| ||||||||| || |||||||| ||
Sbjct 1 TTTCTCACCATCTTCGTCGCTATGTCAAGA-TTTCTGATCTCTAGGATTGTTGGAAAACA 59
Query 363 AACACAATCTCT-TGTCTCGAACCAGAAAGATAGAGTGTCTCAATGGGGAAGCTATAGAA 421
||| |||||||| | | |||||||||||||| |||||||| |||||||||||||||||||
Sbjct 60 AACGCAATCTCTAT-TGTCGAACCAGAAAGAGAGAGTGTCCCAATGGGGAAGCTATAGAA 118
Query 422 CTGCTTTTACAGCTGCTCTAAGGTCGCCTCAGCTCAGAACTTACTCTTCATCTGGTAGGA 481
||||||||||||||||||||||||||||||| | |||||||||||||| |||||||||
Sbjct 119 CTGCTTTTACAGCTGCTCTAAGGTCGCCTCAATTTAGAACTTACTCTTCCTCTGGTAGGG 178
Query 482 TTCCGAGTAATGTGTATTGTACTTTT-GCCTTTAGAGATCTCAAAGGAAGTTTTTTAAGT 540
|||||||||||| |||||||| |||| |||||||||||||| |||||||||||||| |||
Sbjct 179 TTCCGAGTAATGGGTATTGTA-TTTTGGCCTTTAGAGATCTTAAAGGAAGTTTTTTGAGT 237
Query 541 AATCATCTGTCTCGAAGTTATACTACTGCCCCTGCAAGAAATGTAGTTAGTCATCATGCC 600
||||||||||| |||| |||| |||||| |||||||||||||||||||||||||||| ||
Sbjct 238 AATCATCTGTCCCGAAATTATTCTACTGTCCCTGCAAGAAATGTAGTTAGTCATCATACC 297
Query 601 CAAATTGCTTGGAGAAGGCTTCATTATAAGTATTCTGAGCGTATTAGTACCATTGCTCAG 660
||| ||||||||| |||||||||||||||||||||||||||||| ||||| || ||||||
Sbjct 298 CAAGTTGCTTGGAAAAGGCTTCATTATAAGTATTCTGAGCGTATAAGTACTATGGCTCAG 357
Query 661 GCGTTTAGCTTGTCTCTTACCCGTTCGCACTTGTTAATACCTGGGATCGTTGCTGTCACT 720
||||| |||||||||||||||||||| ||||||||||||||||||||||||||| |||||
Sbjct 358 GCGTTCAGCTTGTCTCTTACCCGTTCACACTTGTTAATACCTGGGATCGTTGCTCTCACT 417
Query 721 TGTGGACAAGTAGCATGGGCACAAAGAGCTCCTGGTTCGGGGATAAATCACTATGCTTCA 780
|||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 418 TGTGGACAAGTAGCTTGGGCTCAAAGAGCTCCTGGTTCGGGGATAAATCACTATGCTTCA 477
Query 781 GATAAATCTCTCTATACAAGGGCTAAGAATGGTCCTATCTTTCTGTCTTCGTTATTGTTT 840
|||||||| || ||||||||||| ||||| ||||||||||||||||||||||||||||||
Sbjct 478 GATAAATCCCTTTATACAAGGGCGAAGAACGGTCCTATCTTTCTGTCTTCGTTATTGTTT 537
Query 841 TCGGTTATAGAGGGTTTTATCTTGATTGGGAGGGCTTTTTATATAGCTTGTTTGTTTACT 900
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 538 TCGGTTATAGAGGGTTTTATTTTGATTGGGAGGGCTTTTTATATAGCTTGTTTGTTTACT 597
Query 901 CCTACTATTCTGATGGGGCTGGTTGTGGAATCATGTGGGCCTCGTTTTAGGAAAATATGG 960
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 598 CCTAGTATTCTGATGGGGCTGGTTGTGGAATCATGTGGGCCTCGTTTTAGGAAAATATGG 657
Query 961 CTTGAGATGGTCCATCGAACTCTGGAAAGAGCAGGTCCTGCTTTTATCAAATGGGGTCAA 1020
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 658 CTTCAGATGGTCCATCGAACTCTGGAAAGAGCAGGTCCTGCTTTTATCAAATGGGGTCAA 717
Query 1021 TGGGCAGCCACGCGACCTGATCTATTCCCCAAGGATTTGTGTTCACAGCTCTCAAAGCTT 1080
||||||||||| ||||| ||||||||||||||||||||||||| ||||||||||||||||
Sbjct 718 TGGGCAGCCACACGACCAGATCTATTCCCCAAGGATTTGTGTTTACAGCTCTCAAAGCTT 777
Query 1081 CACAGTAATGCTCCTGAGCATAGCTTCGCCTACACTAAGAAAACTATCGAGAAGGCATTT 1140
|||||||||||||||||||||||||| |||||||||||||||||||| |||||||| |||
Sbjct 778 CACAGTAATGCTCCTGAGCATAGCTTTGCCTACACTAAGAAAACTATTGAGAAGGCGTTT 837
Query 1141 GGTCGTAAACTTTCTGAGATATTTGAGGAGTTTGATGAGGTGCCAGTGGCATCTGGGAGT 1200
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 838 GGTCGTAAACTTTCTGAGATATTTGAGGAGTTTGAAGAGGTGCCAGTGGCATCTGGGAGT 897
Query 1201 ATTGCCCAAGTACATAGAGCTTCTTTAAGGTTTCAGTATCCAGGACAAAAGTCCAAGTCT 1260
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 898 ATTGCTCAAGTACATAGAGCTTCTTTAAGGTTTCAGTATCCAGGACAAAAGTCCAAGTCT 957
Query 1261 TCGCTGGTTGCGGTTAAAGTTAGACATCCGGGTGTTGGTGAATCGATTAGGAGAGATTTT 1320
||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 958 TCGTTGGTTGCTGTTAAAGTTAGACATCCGGGTGTTGGTGAATCGATTAGGAGAGATTTT 1017
Query 1321 GTGATAATTAATTTGGTGGCAAAGATATCGACTTTAATTCCAGCTTTGAAATGGTTGAGA 1380
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1018 GTGATAATTAATTTGGTGGCAAAGATATCTACTTTAATTCCAGCTTTGAAATGGTTGAGA 1077
Query 1381 TTGGACGAGAGTGTGCAACAGTTTGGTGTCTTCATGTTGTCTCAAGTTGATCTCGCGAGG 1440
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1078 TTGGACGAGAGTGTGCAACAGTTTGGTGTCTTCATGTTGTCTCAAGTTGATCTCGCGAGG 1137
Query 1441 GAAGCTTCACATTTGAGTCGGTTCATATATAACTTCCGTAGATGGAAGGATGTCTCTTTC 1500
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 1138 GAAGCTTCACATTTGAGTCGGTTCATATATAACTTTCGTAGATGGAAGGATGTCTCTTTC 1197
Query 1501 CCTAAACCTGTGTATCCTCTTGTACATCCTGCTGTTTTGGTGGAGACATATGAGCATGGA 1560
||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||
Sbjct 1198 CCTAAACCTGTGTATCCCCTTGTACATCCTGCTGTTTTGGTGGAGACATATGAGCACGGA 1257
Query 1561 GAAAGTGTGGCACGTTATGTTGATGGAATGGAAGGACATGAATGGATTAAGACTAGATTG 1620
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1258 GAAAGCGTGGCACGTTATGTTGATGGAATGGAAGGACATGAATGGATTAAGACTAGATTG 1317
Query 1621 GCTCACATCGGGACCCATGCCCTCTTGAAGATGCTCTTGGTTGATAACTTTATTCACGCT 1680
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1318 GCTCATATCGGGACCCATGCCCTCTTGAAGATGCTCTTGGTTGATAACTTTATTCACGCT 1377
Query 1681 GACATGCATCCGGGAAATATCCTTGTCCGGAAAAAGGCTTCCCGTGGAGGCCTTTTCAAA 1740
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 1378 GACATGCATCCGGGAAATATCCTTGTCCGGAAAAAGGCTTCCGGTGGAGGCCTTTTCAAA 1437
Query 1741 ACGAAGAAGCCTCACATTGTTTTCCTTGATGTGGGAATGACTGCAGAACT-TGCAAAGAA 1799
|||||||||||||||||||||||||||||||||||||||||||| ||||| | |||||||
Sbjct 1438 ACGAAGAAGCCTCACATTGTTTTCCTTGATGTGGGAATGACTGCGGAACTCT-CAAAGAA 1496
Query 1800 TGACCGAGAGAACTTACTTGACTTTTTCAAGGCGGTTGCGCGTAGAGATGGCCGGACTGC 1859
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1497 CGACCGAGAGAACTTACTTGATTTTTTCAAGGCGGTTGCGCGTAGAGATGGCCGGACTGC 1556
Query 1860 TGCTGAACGAACACTTAAATTATCAAGAAAGCAGAATTGTCCCAATCCAGAGGCTTTTAT 1919
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1557 TGCTGAACGAACACTTAAATTATCAAGAAAGCAGAATTGTCCCAATCCAGAGGCTTTTAT 1616
Query 1920 CGAGGAAGTAGAGGAAGCATTCAAATTCTGGGGAACCCCTGAGGGAGATTTAGTACATCC 1979
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1617 CGAGGAAGTAGAGGAGGCATTCAAATTCTGGGGAACCCCTGAGGGAGATTTAGTACATCC 1676
Query 1980 AGCAGATTGTATGCACGAATTACTTGAGAAAGTAAGACGTCATAGAGTAAATATTGATGG 2039
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 1677 AGCAGATTGTATGCACGAATTACTTGAGAAAGTAAGACGTCATAGAGTTAATATTGATGG 1736
Query 2040 GAATGTGTGCACTGTTATGGTGACAACATTAGTTCTCGAGGGTTGGCAACGGAAACTTGA 2099
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1737 GAATGTGTGCACTGTGATGGTGACAACATTAGTTCTCGAGGGTTGGCAACGGAAACTTGA 1796
Query 2100 CCCAGGATATGATGTGATGCACACGTTGCAAACAATGGTGTTGAAAACCGACTGGGCTAA 2159
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1797 CCCAGGATATGATGTGATGCACACGTTGCAAACAATGGTGTTGAAAACCGACTGGGCTAA 1856
Query 2160 GTCTCTTTCTTATACGGTGGATGGTCTGATGGCGCCGTAGGCGAAGAAAGGTTC-CATCT 2218
|||||||||||| |||||||||||||||||||||||||||| || |||||| || |||||
Sbjct 1857 GTCTCTTTCTTACACGGTGGATGGTCTGATGGCGCCGTAGGAGATGAAAGG-TCTCATCT 1915
Query 2219 TTTTGAAATTTTGTTTGTTATCATCATAGGAGTCGAAACAATTTACACATCTTAGATGAG 2278
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1916 TTTTGAAATTTTGTTTGTTATCATCATAGGAGTCGAAACAATTTACACATCTTAGATGAG 1975
Query 2279 AGAACATAGAAAGAAAGTACATGTTCTTATGTTCcttttgtttttttctttcattctttt 2338
|||||||||||||||||||||||||||| || |||| ||| ||| || ||||||||||||
Sbjct 1976 AGAACATAGAAAGAAAGTACATGTTCTTGTGATCCTCTTG-TTTATT-TTTCATTCTTTT 2033
Query 2339 gtcttttgctttttATTGTCATGGATTTTGGTTCATTCTAACTACATAGATTGTATTTAC 2398
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2034 GTCTTTTGCTTTTTATTGTCATGGATTTTGGTTCATTCTAACTACATAGATTGTATTTAC 2093
Query 2399 GCGGTTGGTTTCCGTTATAAACCGCCTGTTTATTCTCTGAACCAAAGAACAGTGAACA 2456
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2094 GCGGTTGGTTTCCGTTATAAACCGCCTGTTTATTCTCTGAACCAAAGAACAGTGAACA 2151
> Ahg475162 jgi|Araly1|475162|fgenesh2_kg.2__292__AT1G61640.1
Length=2227
Score = 1164 bits (630), Expect = 0.0
Identities = 1293/1606 (81%), Gaps = 73/1606 (5%)
Strand=Plus/Plus
Query 652 ATTGCTCAGGCGTTTAGCTTGTCTCTTA-CCCGTTCGCACTTGTTAATACCTGGGATCGT 710
|||||||| ||||||||||||||| ||| |||||||||||||||| |||| || || |
Sbjct 422 ATTGCTCAAGCGTTTAGCTTGTCT-TTAGCCCGTTCGCACTTGTTGTTACCCGGTTTC-T 479
Query 711 T-GCTGTCACTTGTGGACAAGTAGCATGGGCACAAA--G-AGCTCCTGGTTCGGGGATAA 766
| ||| | |||||| ||||||| |||| || |||| | ||||| | || | | |
Sbjct 480 TGGCTCTTACTTGTAGACAAGTGGCATATGCGCAAAGGGTGGCTCCAAG-TC-CTG-TCA 536
Query 767 ATCACTATGCTTCAGATAAATCTCTCTATACAAGG-GCT-AAGAATGGT-CCTATCTTTC 823
| | | | ||||| | ||| ||| || ||| | | | || | |||||| ||
Sbjct 537 TTTATTCTCCTTCACACGTTTCT-TCT-TA-TAGGCGTTCGATAAACTTCCCTATCATTA 593
Query 824 TGTCTTCGTTATTG-TTT-T-CGGTTATAGAGG-GTTTTATCTTGATTGGGAGGGCTTTT 879
| || || |||||| ||| | |||| | | ||| ||| | || |||||||||| ||| |
Sbjct 594 TCTCGTCTTTATTGTTTTCTGCGGTCA-A-AGGTGTTGT-TC-TGATTGGGAGAGCTCTC 649
Query 880 TATATAGC-TTGTTTGTTTACTCCTACTATTCTGATGGGGC-TGGTTGTGGAATCATGT- 936
||| |||| || ||||||| |||| | | || | || ||| | |||| ||| | |||
Sbjct 650 TATTTAGCATT-TTTGTTTTCTCCAAATGTTATAAT--GGCTTTGTTG-GGATTTGTGTG 705
Query 937 -GGGCCTCGTTTTAGGAAAATATGGC--T-TGAGATGGTCCATCGAACTCTGGAAAGAGC 992
|||||||||| | | ||| | || | |||| | ||||||||||| ||||||||||
Sbjct 706 CGGGCCTCGTTACA-G-AAAGCT-GCAGTATGAGGTCCTCCATCGAACTTTGGAAAGAGC 762
Query 993 AGGTCCTGCTTTTATCAAATGGGGTCAATGGGCAGCCACGCGACCTGATCTATTCCCCAA 1052
|||||||||||||||||||| || |||||| ||||| |||||||||| || |||
Sbjct 763 AGGTCCTGCTTTTATCAAATTTGGCCAATGGATTGCCACACGACCTGATCGCTTTAACAA 822
Query 1053 GGATTTGTGTTCACAGCTCTCAAAGCTTCACAGTAATGCTCCTGAGCATAGCTTCGCCTA 1112
||||||||||| ||||| ||||||||||||||||||||||||||||| || || || |
Sbjct 823 GGATTTGTGTTTGCAGCTTTCAAAGCTTCACAGTAATGCTCCTGAGCACAGTTTTGCGTT 882
Query 1113 CACTAAGAAA-A-CTATCGAGAA-GGCATTTGGTCGTAAACTTTCTGAGATATTTGAGGA 1169
||| || ||| | | ||||| || ||||||||||||||||| ||||| |||||||||||
Sbjct 883 CACCAA-AAAGAGC-ATCGA-AACTGCATTTGGTCGTAAACTCTCTGAAATATTTGAGGA 939
Query 1170 GTTTGATGAGGTGCCAGTGGCATCTGGGAGTATTGCCCAAGTACATAGAGCTT-CTTTAA 1228
|||||||||| ||||||||||||||||||||| || |||||||| |||||| ||| ||
Sbjct 940 ATTTGATGAGGCGCCAGTGGCATCTGGGAGTATAGCTCAAGTACACCGAGCTTCCTTGAA 999
Query 1229 GGTTTCAGTATCCAGGACAAAA-GTCCAAGTCTTCGCTGGTTGCGGTTAAAGTTAGACAT 1287
||||||||||||||||||||| || ||||||||| ||||| |||||||||||||||
Sbjct 1000 -GTTTCAGTATCCAGGACAAAAGGT-GAAGTCTTCGGAAGTTGCTGTTAAAGTTAGACAT 1057
Query 1288 CCGGGTGTTG-GTGAATCGATTAGGAGAGATTTTGTGATAATTAATTTGGTGGCAAAGAT 1346
|| |||||| | ||| |||| | | |||||||||||||||||||||| ||||||||| |
Sbjct 1058 CCTTGTGTTGAG-GAAACGATGAAGCGAGATTTTGTGATAATTAATTTTGTGGCAAAGCT 1116
Query 1347 ATCGACTTTAATTCCAGCTTTGAAATGG-TTGAGATTGGACGAGAGTGTGCAACAGTTTG 1405
| | ||||| ||||| | |||| ||| || |||||||||||| ||||||||||||||
Sbjct 1117 AACTACTTTTATTCCGGGGCTGAATTGGCTT-AGATTGGACGAGTGTGTGCAACAGTTTA 1175
Query 1406 GTGTCTTCATGTTGTCTCAAGTTGATCTCGCGAGGGAAGCTTCACATTTGAGTCGGTTCA 1465
|||||| ||||||||| |||||||||||| | ||||||||||| |||||||||||||| |
Sbjct 1176 GTGTCTACATGTTGTCCCAAGTTGATCTCTCAAGGGAAGCTTCTCATTTGAGTCGGTTTA 1235
Query 1466 TATATAACTTCCGTAGATGGAAGGATGTCTCTTTCCCTAAACCTGTGTATCCTCTTGTAC 1525
| |||||||||||| ||||||| ||||||||||| ||||| || | ||||| ||| |||
Sbjct 1236 TTTATAACTTCCGTGGATGGAAAGATGTCTCTTTTCCTAAGCCCATCTATCCGCTTATAC 1295
Query 1526 ATCCTGCTGTTTTGGTGGAGACATATGAGCATGGAGAAAGTGTGGCACGTTATGTTGATG 1585
|||| ||||||||||| ||||| |||||||| ||||| || ||||| |||||||| ||||
Sbjct 1296 ATCCCGCTGTTTTGGTCGAGACGTATGAGCACGGAGAGAGCGTGGCTCGTTATGTCGATG 1355
Query 1586 GAAT-GGAAGGACATGAATGGATTAAGACTAGATTGGCTCACATCGGGACCCATGCCCTC 1644
| | |||||||||||| || ||||| ||| | | ||||| ||||| || ||||| |||
Sbjct 1356 G-CTCAGAAGGACATGAAAGGCTTAAGGCTAAAGTAGCTCATATCGGAACTCATGCTCTC 1414
Query 1645 TTGAAGATGCTCTTGGTTGATAACTTTATTCACGCTGACATGCATCC-GGGAAATATCCT 1703
||||| |||||| |||| || ||||| ||||| ||||| |||||||| ||| ||||| ||
Sbjct 1415 TTGAAAATGCTCCTGGTCGACAACTTCATTCATGCTGATATGCATCCTGGG-AATATTCT 1473
Query 1704 TGTCCGGAAAAAGGCTTCCCGTGGAGGCCTTTTCAAAACGAA-GAAGCCTCACATTGTTT 1762
||||||| ||| | | || |||| ||||||| | | || |||||| ||||||||||
Sbjct 1474 TGTCCGGCCAAACAATACTCGAAGAGGTCTTTTCAGATC-AAGGAAGCCACACATTGTTT 1532
Query 1763 TCCTTGATGTGGGAATGACTGCAGAACT-TGCAAAGAA-TGACCGAGAGAACTTACTTGA 1820
|||| |||||||| |||||||| ||||| | |||| || ||||||||| ||| |||| |
Sbjct 1533 TCCTAGATGTGGGCATGACTGCGGAACTCT-CAAA-AATTGACCGAGATAACCTACTCGG 1590
Query 1821 CTTTTTCAAGGCGGTTGCGCGTAGAGATGGCCGGACTGCTGCTGAACGAACACTTAAATT 1880
||||||||||| ||||| |||||||| ||||||||||||||||||||||||||||||||
Sbjct 1591 GTTTTTCAAGGCAGTTGCACGTAGAGACGGCCGGACTGCTGCTGAACGAACACTTAAATT 1650
Query 1881 ATC-AAGA-AAGCAGAATTGTCCCAATCCAGAGGCTTTTATCGAGGAAGTAGAGGAAGCA 1938
||| || | || ||||||||||| ||||| |||| |||||| |||||||||| || |||
Sbjct 1651 ATCTAA-ACAA-CAGAATTGTCCTAATCCTCAGGCCTTTATCAAGGAAGTAGAAGATGCA 1708
Query 1939 TTCAAATTCTGGGGAACCCCTGAGGGAGATTTAGTACATCCAGCAGATTGTATGCACGAA 1998
|| | |||||||||||| || |||||| |||| |||||||| |||||||||||||||
Sbjct 1709 TTTACATTCTGGGGAACAGAGGAAGGAGATCTAGTCCATCCAGCGGATTGTATGCACGAA 1768
Query 1999 TTACTT-GAGAAAGTAAGACGTCATAGAGTAAATATTGATGGGAATGTGTGCACTGTTAT 2057
|| || |||||| | || ||||||||||| ||||| || || ||||| | ||| || ||
Sbjct 1769 CTA-TTCGAGAAAATGAGGCGTCATAGAGTTAATATCGACGGCAATGTATCCACCGTGAT 1827
Query 2058 GGTGACAACATTAGTTCTCGAGGGTTGGCAACGGAAACTTGACCCAGGATATGATGTGAT 2117
| | |||||||||||||||||||||||||||||||||||||| || ||||| ||||||||
Sbjct 1828 GTTTACAACATTAGTTCTCGAGGGTTGGCAACGGAAACTTGATCCGGGATACGATGTGAT 1887
Query 2118 GCACACGTTGCAAACAATGGTGTTGAAAACCGACTGGGCT-AAGTCTCTTTCTTATACGG 2176
|| ||| | ||||||||| || ||||||| || ||| | || || |||||||| |||
Sbjct 1888 GCGTACGCTACAAACAATGCTGCTGAAAACGGATTGGA-TGAAATCACTTTCTTACACGA 1946
Query 2177 TGGATGGTCTGATGGCGCCGTAGGC-GAAGAAAGGTTCCATCTTTT 2221
| ||||| |||||||| |||||| ||| || ||||| |||||||
Sbjct 1947 TCGATGGACTGATGGCTCCGTAGATTGAA-AA-GGTTCAATCTTTT 1990
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 94311446620
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5