BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G11400.1
Length=1044
Score E
Sequences producing significant alignments: (Bits) Value
Ahg471276 jgi|Araly1|471276|fgenesh2_kg.1__1230__AT1G11400.2 1419 0.0
> Ahg471276 jgi|Araly1|471276|fgenesh2_kg.1__1230__AT1G11400.2
Length=1017
Score = 1419 bits (768), Expect = 0.0
Identities = 910/977 (93%), Gaps = 16/977 (2%)
Strand=Plus/Plus
Query 80 GGTTTCGTTTCACCGGATTTGGGCTCTCCGGCGACGGAGAATAGCCACCATCTCCG-T-- 136
||||||||||||||||||||||||||||||||||||||||||||||| || | | |
Sbjct 44 GGTTTCGTTTCACCGGATTTGGGCTCTCCGGCGACGGAGAATAGCCA-AAT-T-TGATAC 100
Query 137 AGTATAC--TTG--ATAGCTGAGGAACAAGAGAAGTGACAAGGGTGATTGAAAAGTTGAA 192
|| | || | | ||||||||| |||||||||||||||||||||||||||||| |||||
Sbjct 101 AGAAAACAGTAGACATAGCTGAGAAACAAGAGAAGTGACAAGGGTGATTGAAAACTTGAA 160
Query 193 GGACTCAGATGGGAAGCAG------AAGCGGAGAACAAGGAAAGCGAATGGCGGAACTGA 246
|||||| |||||||||||| ||| |||||||||||||||| |||||| |||||||
Sbjct 161 GGACTCTGATGGGAAGCAGCAACAAAAGTGGAGAACAAGGAAAGCAAATGGCAGAACTGA 220
Query 247 GCAAAAATCTTAAAGAAGGTGAGAGGATTCTGGAGCCCACACGTAGACCTGATGGTACTC 306
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 221 GCAAAAGTCTTAAAGAAGGTGAGAGGATTCTGGAGCCCACACGTAGACCTGATGGTACCC 280
Query 307 TCCGGAAACCCATTCGGATTCGACCTGGATATACTCCAGAAGATGAAGTTGTCAAATATC 366
||||||||||||| ||||||||| |||||||| |||| |||||||||||||||||||||
Sbjct 281 TCCGGAAACCCATCCGGATTCGAGCTGGATATGTTCCACAAGATGAAGTTGTCAAATATC 340
Query 367 AGTCCAAAGGTTCTCTGATGAAGAAGGAGATGGCCTCACAAGGGCCTCCAGGTTATGAAC 426
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 341 AGTCCAAAGGTTCTCTGATGAAGAAGGAGATGGCCTCACAAGGGCCTCCTGGTTATGAAC 400
Query 427 CTGATCCAGCTCCTAAACCAAAGACTAAAGCTGCTAAGAGGAACGAACGTAAAAAAGAGA 486
||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 401 CTGATCCAGCTCCGAAACCAAAGACTAAATCTGCTAAGAGGAACGAACGTAAAAAAGAGA 460
Query 487 AGCGATTACAGGCTACTGCAGAAAAAGCTAACAGCTCTGAGGATGGATCAGCTAGTAATG 546
|| |||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 461 AGAGATTACAGTCTACTGCAGAAAAAGGTAACAGCTCTGAGGATGGATCAGCTAGTAATG 520
Query 547 GATCCCAATCGGTGAATGTATTGGCTTCTGAAATGGAGGCTTTGGACGTTTCGTCAAATA 606
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 521 GATCCCAATCGGTGAATGTATTGGCTTCTGAAATGGAGGCTTTGGACGTTTCTTCAAATA 580
Query 607 ATGATGTATGTGGGGGAGCACCTAATCCAGGAACCACAGGAGAAGACGTAGAGAAAAGAA 666
||||||||||||| | ||| || ||||||| ||| |||||||||||||||||||||||||
Sbjct 581 ATGATGTATGTGGAGAAGCGCCCAATCCAGTAACTACAGGAGAAGACGTAGAGAAAAGAA 640
Query 667 TCCGCGCACTTAAGAAGAAAATCCGACTCACAGAAGCTCAACAGCAGAAGACTGCTTCCC 726
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 641 TCCGCGCACTTAAGAAGAAAATCCGACTTACAGAAGCTCAACAGCAGAAGACTGCTTCCC 700
Query 727 GAGACCTAAACCCAGAGCAGTTAGAGAAATTCTCTAAGTTGGAAGAATGGAGGCAAGAAC 786
|||| ||||||| ||||||||||||||||| |||||||||||||||||||| |||||||
Sbjct 701 AAGACTTAAACCCGGAGCAGTTAGAGAAATTTTCTAAGTTGGAAGAATGGAGACAAGAAC 760
Query 787 TCAAGGCTCTGGAGGATAAGGCGGCTTAACTTGCTGCAGCATCAACATGAATTGTCTAAC 846
|||||||||| |||||||||| ||||| ||||||||||||||| |||||||| |||||||
Sbjct 761 TCAAGGCTCTAGAGGATAAGGAGGCTTGACTTGCTGCAGCATCGACATGAATGGTCTAAC 820
Query 847 TTTTAGGCAGGCTGCAGTTTCTCTCATGAAATTTCTGGAACCAATCCAAATTTGTATCAA 906
|||||| ||||||| ||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 821 TTTTAGACAGGCTGTAGTATCTCTCATGAAATTTCTGGAACCAATCCAAATTTGTATCAA 880
Query 907 TGAAAAGAAGGCTGTTGTTACTTGTTAGGTTTTGTCAGATCTGATTAATGAACTTGGCGC 966
||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 881 TGAAAAGAAAGCTGTTGTTACTTCTTAGGTTTTGTCAGATCTGATTAATGAACTTGGCGC 940
Query 967 AATGCCTGAATCTTCATGGGAATTGATTTCACATTGTGTTTGCGTTTGGTCCTAATCTAA 1026
|||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 941 AATGCCTGAATCCTCATGGGAATTGATGTCACATTGTGTTTGCGTTTGGTCCTAATCTAA 1000
Query 1027 AGAATATGATTCCAAAC 1043
|||| |||||||||||
Sbjct 1001 AGAACGTGATTCCAAAC 1017
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 38847252423
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5