BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G11410.1
Length=2686
Score E
Sequences producing significant alignments: (Bits) Value
Ahg471279 jgi|Araly1|471279|fgenesh2_kg.1__1233__AT1G11410.1 4181 0.0
Ahg471270 jgi|Araly1|471270|fgenesh2_kg.1__1224__AT1G11340.1 1733 0.0
> Ahg471279 jgi|Araly1|471279|fgenesh2_kg.1__1233__AT1G11410.1
Length=2676
Score = 4181 bits (2264), Expect = 0.0
Identities = 2553/2692 (95%), Gaps = 22/2692 (1%)
Strand=Plus/Plus
Query 1 ATGAAGTTCTTCTTTATCTTTTTCATTTTCTTGTTCTCCTTCTTGATTCAATCTTGTTAC 60
|||||||||||||||||||||||||||||||| || ||| ||||||||||||||||||||
Sbjct 1 ATGAAGTTCTTCTTTATCTTTTTCATTTTCTTATTTTCCCTCTTGATTCAATCTTGTTAC 60
Query 61 TCTGACAACACAATCTTGAGAAGTCAGTCTTTGAAAGATGGTGATGTTATATACTCTGAA 120
||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||
Sbjct 61 TCTGACAACACAATCTTGAGAAGACAGTCTTTGAAAGATGGTGATGTTATATTCTCTGAA 120
Query 121 GGAAAGAGATTTGCTTTTGGATTCTTCAGCTTGGGGAATTCAAAGCTCAGGTATGTTGGG 180
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 121 GGAAAAAGATTTGCTTTTGGATTCTTCAGCTTGGGGAATTCAAAGCTCAGGTATGTTGGG 180
Query 181 ATTTGGTATGCTCAAGTCTCTGAGCAGACTATTGTATGGGTTGCAAATAGAGATCATCCT 240
||||||||||||||||||||||| |||||| |||||||||||||||||||||| ||||||
Sbjct 181 ATTTGGTATGCTCAAGTCTCTGAACAGACTGTTGTATGGGTTGCAAATAGAGACCATCCT 240
Query 241 ATTAATGACACATCTGGTCTGATAAAGTTCAGTACCAGAGGGAATCTTTGTGTGTATGCA 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 241 ATTAATGACACATCTGGTCTGATAAAGTTCAGTACCAGAGGGAATCTTTGTGTGTATGCA 300
Query 301 TCTGGCAATGGAACAGAGCCTATTTGGTCTACTGATGTTATTGATATGATCCAAGAACCT 360
|||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 301 TCTGTCAATGGAACAGAGCCTATCTGGTCTACTGATGTTATTGATATGATCCAAGAACCG 360
Query 361 GCTTTAGTTGCGAAGCTATCTGATTTAGGCAACCTTGTTCTACTTGATCCTGTCACAGGG 420
|||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||
Sbjct 361 GCTTTAGTTGCGAAGCTAACTGATTTAGGCAACCTTGTTCTACTTGATCCTGTCACTGGG 420
Query 421 AAAAGTTTCTGGGAGAGCTTTAATCATCCTACAAACACTTTGCTTCCCTTTATGAAGTTT 480
|||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 421 AAAAGTTTTTGGGAGAGCTTTAATCATCCTACAAACACTTTGCTTCCTTTTATGAAGTTA 480
Query 481 GGATTCACTCGTCAAAGCGGTGTGGATCGTATTATGACGTCTTGGAGATCTCCTGGTGAC 540
|||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||
Sbjct 481 GGATTCACTCGTCAAAACGGTGTGGATCGTATTATGACATCTTGGAGATCTCCTGGTGAC 540
Query 541 CCGGGTTCTGGAAACATTACATACCGGATAGAACGTAGAGGGTTTCCGCAGATGATGATG 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 541 CCGGGTTCTGGAAACATTACATACCGGATAGAACGTAGAGGGTTTCCGCAGATGATGATG 600
Query 601 TACAAGGGTCTGACTCTTTGGTGGCGTACTGGGTCATGGACAGGGCAAAGATGGAGTGGT 660
||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||
Sbjct 601 TACAAGGGTCTGACTCTGTGGTGGCGTACTGGATCATGGACAGGGCAAAGATGGAGTGGT 660
Query 661 GTGCCTGAAATGACAAACAAGTTTATCTTCAATATCTCGTTTGTGAATAATCCAGATGAA 720
|||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||
Sbjct 661 GTGCCTGAAATGACAAACAAGTTTATCTTCAATATCTCCTTTGTGAATACTCCAGATGAA 720
Query 721 GTATCAATCACTTATGGAGTGTTAGATGCTTCGGTTACAACAAGAATGGTGCTAAACGAG 780
||||| |||||||| |||||||| |||||||||||||||||| |||||||||||||||||
Sbjct 721 GTATCGATCACTTACGGAGTGTTGGATGCTTCGGTTACAACACGAATGGTGCTAAACGAG 780
Query 781 ACAGGAACTCTGCAACGGTTTC-GCTGGAACGGGAGAGATAAGAAATGGATCGGGTTCTG 839
|| ||||||||||||||||| | | |||||||||||||||||||||||||| ||||||||
Sbjct 781 ACGGGAACTCTGCAACGGTT-CAGATGGAACGGGAGAGATAAGAAATGGATTGGGTTCTG 839
Query 840 GTCAGCTCCCGAAGATAAGTGTGACATCTACAACCACTGTGGCTTTAACGGTTACTGTGA 899
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 840 GTCAGCTCCCGAAGATAAGTGTGACATCTACAACCACTGTGGTTTTAACGGTTACTGTGA 899
Query 900 TTCCACCAGTACAGAGAAGTTTGAGTGCTCTTGCTTACCGGGGTACGAGCCTAAGACACC 959
| ||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||
Sbjct 900 TCCCACCAGTACAGACAAGTTTGAGTGCTCTTGCTTACCGGGCTACGAGCCTAAGACACC 959
Query 960 TCGAGATTGGTTCTTGAGAGATGCTTCGGATGGGTGCACGAGGATAAAAGCAGATTCGAT 1019
||||||||||||||||| |||||||||||||| ||||||||||||||||||| ||||||
Sbjct 960 CCGAGATTGGTTCTTGAGGGATGCTTCGGATGGTTGCACGAGGATAAAAGCAGCTTCGAT 1019
Query 1020 ATGTAATGGGAAAGAAGGGTTTGCAAAGTTGAAGCGAGTGAAGATTCCCAATACATCAGC 1079
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1020 ATGTAATGGGAAAGAAGGGTTTGCAAAGTTGAAGCGAGTGAAGATTCCCAATACATCAGC 1079
Query 1080 TGTTAATGTGGATATGAACATAACACTGAAGGAATGTGAACAGAGGTGCTTGAAGAACTG 1139
||||||||| ||||||||||||||| |||||||||| |||||||||||||||||||||||
Sbjct 1080 TGTTAATGTAGATATGAACATAACATTGAAGGAATGCGAACAGAGGTGCTTGAAGAACTG 1139
Query 1140 CTCATGTGTTGCTTATGCGAGTGCTTACCACGAGAGTCAAGATGGAGCTAAAGGGTGCTT 1199
||| ||||| |||||||||||||||||||| |||||| || | ||||| |||||||||||
Sbjct 1140 CTCTTGTGTCGCTTATGCGAGTGCTTACCATGAGAGTGAAAACGGAGCAAAAGGGTGCTT 1199
Query 1200 GACATGGCACGGCAATATGTTGGATACTAGGACATACTTGAGCTCAGGACAGGATTTCTA 1259
||||||||||||||||||| ||||||| ||||||||||||||||| ||||| ||||||||
Sbjct 1200 GACATGGCACGGCAATATGCTGGATACAAGGACATACTTGAGCTCGGGACAAGATTTCTA 1259
Query 1260 TTTACGCGTAGATAAGTCAGAGTTAGCGCGGTGGAATGGAAATGGCGCATCGGGGAAGAA 1319
|||||||||||||||||||||||| ||||||||||||||||||| |||| |||||||
Sbjct 1260 CCTACGCGTAGATAAGTCAGAGTTAGTGCGGTGGAATGGAAATGGCTCATCAGGGAAGAT 1319
Query 1320 GAGACTTGTTTTAATTCTCATCAGTTTGATTGCAGTCGTGATGTTACT-ACTGATCAGTT 1378
||||||| |||||||||||||||||||| |||||||||| |||||||| | |||||||||
Sbjct 1320 GAGACTTTTTTTAATTCTCATCAGTTTGCTTGCAGTCGTCATGTTACTTA-TGATCAGTT 1378
Query 1379 T-TCACTGTTATTTAAGGAAGCGAAGACAACGAACACAGTCTAACAGGCTTAGAAAAGCT 1437
| | ||||| | | ||| ||| || ||| ||||| ||| ||||| |||| ||||
Sbjct 1379 TGTT-CTGTT-TC-AT--AAG-GAA-AC---GAAGACAGTTTAAAAGGCTGAGAAGAGCT 1428
Query 1438 CCATCAAGCTTCGCTCCGAGCTCTTTTGATCTTGAAGACTCATTCATACTTGAAGAGCTT 1497
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1429 CCATCAAGCTTCGCTCCGAGCTCTTTTGATCTTGAAGACTCATTCATACTTGAAGAGCTT 1488
Query 1498 GAGGACAAATCAAGAAGCCGGGAGTTGCCTCTCTTTGAGCTTAGCACGATTGCTACAGCA 1557
|||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1489 GAGGACAAATCAAGAACCCGGGAGTTGCCTCTCTTTGAGCTTAGCACGATTGCTGCAGCA 1548
Query 1558 ACGAATAATTTTGCTTTTCAAAACAAGCTTGGAGCAGGTGGTTTTGGACCTGTTTATAAA 1617
|||||||| || |||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1549 ACGAATAACTTCGCTTTTCAAAACAAGCTTGGAGCAGGTGGTTTTGGACCGGTTTATAAG 1608
Query 1618 GGTGTGTTACAAAATGGTATGGAAATAGCAGTGAAGAGGTTGTCAAAAAGCTCAGGTCAA 1677
|| |||||||||||||||||||||||||||||||||||||||||||||||||| || |||
Sbjct 1609 GGAGTGTTACAAAATGGTATGGAAATAGCAGTGAAGAGGTTGTCAAAAAGCTCGGGGCAA 1668
Query 1678 GGAATGGAAGAGTTCAAGAACGAGGTCAAGTTGATATCGAAGCTGCAGCATCGAAATCTC 1737
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 1669 GGAATGGAAGAGTTCAAGAACGAGGTCAAGTTGATATCGAAGTTGCAGCATCGAAATCTC 1728
Query 1738 GTGAGGATCTTAGGATGTTGTGTTGAATTTGAAGAGAAGATGTTGGTATACGAGTATTTA 1797
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 1729 GTGAGGATCTTAGGATGTTGTGTTGAATTTGAAGAGAAGATGCTGGTATACGAGTATTTA 1788
Query 1798 CCAAACAAGAGCCTAGACTATTTCATATTCCATGAAGAGCAAAGAGCAGAGTTGGATTGG 1857
|||||||||||||||||||||||||||||| |||| ||||| |||| ||||||||||||
Sbjct 1789 CCAAACAAGAGCCTAGACTATTTCATATTCAATGAGGAGCATAGAGTGGAGTTGGATTGG 1848
Query 1858 CCAAAAAGAATGGGGATAATCCGCGGGATTG-GTCGTGGAATCTTATACCTTCATCAAGA 1916
|||||| |||||||||||||||||||||||| | |||||||||||||| |||||||||||
Sbjct 1849 CCAAAACGAATGGGGATAATCCGCGGGATTGCG-CGTGGAATCTTATATCTTCATCAAGA 1907
Query 1917 TTCAAGGCTGAGGATCATCCACAGAGACCTTAAGGCCAGCAATGTACTTCTTGACAATGA 1976
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1908 TTCAAGGCTGAGGATCATCCACAGAGACCTCAAGGCCAGCAATGTACTTCTTGACAATGA 1967
Query 1977 AATGATACCGAAGATTGCGGATTTCGGCCTGGCTAGAATCTTCGGAGGCAACCAAATCGA 2036
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 1968 AATGATACCGAAGATTGCGGATTTCGGCCTGGCTAGAATCTTCGGGGGCAACCAAATCGA 2027
Query 2037 AGGAAGCACAAATCGAGTCGTCGGAACATATGGATACATGTCACCAGAGTATGCAATGGA 2096
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 2028 AGGAAGCACAAATCGAGTCGTCGGAACATACGGATACATGTCACCAGAGTATGCAATGGA 2087
Query 2097 CGGCCAGTTCTCTATTAAATCCGATGTATACAGCTTTGGAGTATTGATCTTAGAGATCAT 2156
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 2088 CGGCCAGTTCTCTATTAAATCCGATGTCTACAGCTTTGGAGTATTGATCTTAGAGATCAT 2147
Query 2157 AACCGGAAAGAGAAACAGTGCTTTTTATGAGGAATCTTTGAATCTAGTCAAACATATTTG 2216
||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 2148 AACCGGAAAGAAAAACAGTGCTTTCTATGAGGAATCTTTGAATCTAGTCAAACATATTTG 2207
Query 2217 GGATCGATGGGAAAATGGTGAAGCTATAGAGATCATAGACAAATTAATGGGTGAAGAGAC 2276
||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||| ||
Sbjct 2208 GGATCGATGGGAAAAAGGTGAAGCTATAGAGATCATAGACAAATTAATGAGTGAAGATAC 2267
Query 2277 GTATGATGAGGGCGAAGTAATGAAGTGCTTACACATTGGGTTACTTTGCGTGCAAGAAAA 2336
||||||| | ||||||| ||||||||||||||||||||||| |||||||||||||||||
Sbjct 2268 TTATGATGTGAGCGAAGTGATGAAGTGCTTACACATTGGGTTGCTTTGCGTGCAAGAAAA 2327
Query 2337 C-TCTTCAGACAGACCAGACATGTCCTCTGTTGTCTTCATGTTAGGTCATAACGCCATTG 2395
| | |||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 2328 CGT-TTCAGACAGACCAGACATGTCCTCTGTTGTCTTCATGTTAGGCCATAACGCCATTG 2386
Query 2396 ATCTTCCATCTCCGAAGCATCCTGCATTTACGGCGGGAAGGAGGAGAAACACCAAAACTG 2455
||||||||||||||||||||||||| |||||||||||||| ||||||||| ||||||||
Sbjct 2387 ATCTTCCATCTCCGAAGCATCCTGCGTTTACGGCGGGAAGAAGGAGAAACGTCAAAACTG 2446
Query 2456 GCGGCAGCTCAGATAATTGGCCCAGCGGAGAAACCAGCAGTACTATTAACGACGTTACTC 2515
||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
Sbjct 2447 GCGGCAGCTCAGATAATTGGCCCAGCGGAGAAACCGGCAGTACTATTAACGACGTTACCC 2506
Query 2516 TCACCGATGTTCAAGGTCGTTAAGAAGTGTATTCCTCTTCTTTATAATCTAAGAAGACTA 2575
|||||||||||||||||||||||||||||| |||||||||||||||| |||||||| |||
Sbjct 2507 TCACCGATGTTCAAGGTCGTTAAGAAGTGTTTTCCTCTTCTTTATAAACTAAGAAGCCTA 2566
Query 2576 TAGGTATCAATTTATAGTAATACTTGTTATATAGAAAATTATGTGTTTAAAGCGTATGCA 2635
||||||||||||||||| |||||||||||||||||||||||| ||| |||| |||||||
Sbjct 2567 TAGGTATCAATTTATAGCAATACTTGTTATATAGAAAATTATTTGTATAAAATGTATGCA 2626
Query 2636 A-ACTTATTTGTATAAAGTTTACAAATACCTAATGAAAAGAAAAGTTAGCCT 2686
| | |||||| ||||||||| |||||||||||||||||||||||||||||||
Sbjct 2627 ACA-TTATTTTTATAAAGTT-ACAAATACCTAATGAAAAGAAAAGTTAGCCT 2676
> Ahg471270 jgi|Araly1|471270|fgenesh2_kg.1__1224__AT1G11340.1
Length=2668
Score = 1733 bits (938), Expect = 0.0
Identities = 1699/2058 (83%), Gaps = 86/2058 (4%)
Strand=Plus/Plus
Query 28 TTCTTGTTCTCCTTCTTGATTCAATCTTGTTA-CTCTGACAACACAATCTTGAGAAGTCA 86
||||| |||||| || | |||||||||| || ||||| | || ||| ||||||| ||
Sbjct 227 TTCTTTTTCTCCCTC-T--TTCAATCTTG-TATCTCTGTTGATACGATCATGAGAAGACA 282
Query 87 GTCTTTGAAAGATGGTGATGTTATATACTCTGAAGGAAAGAGATTTGCTTTTGGATTCTT 146
||| |||| |||||||||||| ||| |||||| ||| |||||||| || |||||||||||
Sbjct 283 GTCCTTGAGAGATGGTGATGTCATACACTCTGTAGGGAAGAGATTCGCATTTGGATTCTT 342
Query 147 CAG-CTTGGGGAATTCAAAGCTCAGGTATGTTGGGATTTGGTATGCTCAAGTCTCTGAGC 205
||| ||||||| |||| |||||| ||||||| |||||||||||||||||| || || | |
Sbjct 343 CAGTCTTGGGG-ATTCGAAGCTCCGGTATGTGGGGATTTGGTATGCTCAAATCACTCAAC 401
Query 206 AGACTATTGTATGGGTTGCAAATAGAGATCATCCTATTAATGACACATCTGGTCTGATAA 265
|||||||||||||||||||||| ||||| ||||||||||||||||| |||||||||||||
Sbjct 402 AGACTATTGTATGGGTTGCAAACAGAGACCATCCTATTAATGACACCTCTGGTCTGATAA 461
Query 266 AGTTCAGTACCAGAGGGAATCTTTGTGTGTATGCATCTGGCAATGGAACAGAGCCTATTT 325
||||||||| |||| | ||||| |||||||||||||||| |||||||||||||||||| |
Sbjct 462 AGTTCAGTAACAGATGCAATCTCTGTGTGTATGCATCTGTCAATGGAACAGAGCCTATCT 521
Query 326 GGTCTACTGATGTTAT-TGATATG-ATCCAAGAACCTGCTTTAGTTGCGAAG-CTATCTG 382
|||||||||||||| | |||| | ||| ||| | |||||||||| || || ||||
Sbjct 522 GGTCTACTGATGTT-TCAGATA-GTATCTTGGAAACAACTTTAGTTGC-TAGACTCTCTG 578
Query 383 ATTTAGGCAACCTTGTTCTACTTGATCCTGTCACAGGGAAAAGTTTCTGGGAGAGCTTTA 442
||||||||||||||||||| |||||||| |||||||||| |||||||||||||||||||
Sbjct 579 ATTTAGGCAACCTTGTTCTGCTTGATCCAGTCACAGGGAGAAGTTTCTGGGAGAGCTTTG 638
Query 443 ATCATCCTACAAACACTTTGCTTCCCTTTATGAAGTTTGGATTCACTCGTCAAAG-CGGT 501
||||||||||| ||||||| ||||| ||||||| | | || ||||| || |||| ||||
Sbjct 639 ATCATCCTACAGACACTTTTCTTCCGTTTATGAGGATGGGTTTCACACG-AAAAGACGGT 697
Query 502 GTGGATCG-TATTATGACGTCTTGGAGATCTCCTGGTGACCCGGGTTCTGGAAACATT-A 559
||||||| | || |||| || |||| ||||| ||| ||||| |||| |||| || || |
Sbjct 698 TTGGATCGCT-TTCTGACATCATGGAAATCTCATGGGGACCCTGGTTGTGGAGAC-TTAA 755
Query 560 CATACCGGATAGAACGTAGAGGGTTTCCGCAGATGATGATGTACAAGGGTCTGACT-CTT 618
||| ||||| ||||||||||||||||||||| |||| ||||||| |||| || | |
Sbjct 756 CATTGCGGATGGAACGTAGAGGGTTTCCGCAGTTGATTCTGTACAAAGGTC-GAGTCCCG 814
Query 619 TGGTGGCGTACT-GGGTCATGGACAGGGCAAAGATGGAGTGGTGTGCCTGAAATGACAAA 677
|||||||||| | ||||| ||||| ||||| || ||||| ||||||||||||||| | ||
Sbjct 815 TGGTGGCGTA-TGGGGTCGTGGACCGGGCATAGGTGGAGCGGTGTGCCTGAAATG-CCAA 872
Query 678 CA-AGTTTATCTTCAATATCTCGTTTGTGAATAATCCA-GATGAAGTATCAATCACTTAT 735
| || ||||||||||| |||||||||||||||| | || |||||||| |||||||
Sbjct 873 TAGGGTATATCTTCAATAACTCGTTTGTGAATAAT-GAGGACGAAGTATCCTTCACTTAC 931
Query 736 GGAGTGTTAGATGCTTCGGTTACAACAAGAATGGTGCTAAACGAGACAGGAACTC-TGCA 794
|| ||| ||||||||| || | |||||||| || | |||||||| ||||| | ||||
Sbjct 932 GGTGTGACAGATGCTTCAGTCATAACAAGAACCATGGTGAACGAGACTGGAAC-CATGCA 990
Query 795 ACGGTTTCGC-TGGAACGGGAGAGATAAGAAATGG-ATCGGGTTCTGGTCAGCTCCCGAA 852
||| ||| | |||| | ||| || |||| |||| || | |||||||||| ||| ||
Sbjct 991 CCGG-TTCACATGGATTGCGAGGGACAAGAGATGGAAT-GATTTCTGGTCAGTTCCTAAA 1048
Query 853 GATAAGTGTGACATCTACAAC-CACTGTGGCTTTAACGGTTACTGTGATTCCACC-AG-T 909
|| |||| || | |||| | || |||||| ||||||||||||||| ||| || || |
Sbjct 1049 GAGCAGTGCGATAACTAC-GCTCATTGTGGCCCTAACGGTTACTGTGA-TCCCCCTAGCT 1106
Query 910 ACAGAGAA-GTTTGAGTGCTCTTGCTTACCGGGGTACGAGCCTAAGACACCTCGAG-ATT 967
|| | || |||||||||| | ||| |||| || | ||||| ||| || || | |||
Sbjct 1107 -CA-AAAACGTTTGAGTGCACATGCCTACCTGGTTTTGAGCCCAAGTTTCCCCG-GCATT 1163
Query 968 GGTTCTTGAGAGA-TGCTTC-GGATGGGTGCACGAGGATAAAAGCAGATTCGATATGTAA 1025
|||||||||| || | |||| || ||||| || | || ||||| || ||| | ||| |
Sbjct 1164 GGTTCTTGAGGGACT-CTTCTGG-CGGGTGTACCAAGAAAAAAGGAGCTTCAAGATGCAG 1221
Query 1026 TGGGAAAGAAGGGTTTGCAAAGTTGAAGCG-AGTGAAGATTCCCAATACATCAGCTGTTA 1084
|| |||||| ||||||| ||||| ||||| | |||||||||| | || |||| || |
Sbjct 1222 TGAGAAAGACGGGTTTGTGAAGTTAAAGCGCA-TGAAGATTCCTGACACGTCAGATG-CA 1279
Query 1085 A-TGTGGATATGAACATAACACTGAAGGAATGTGAACAGAGGTGCTTGAAGAACTGCTCA 1143
| ||||||||||||||||||| | ||||| || ||||||||||||||| |||||||||
Sbjct 1280 AGTGTGGATATGAACATAACATTTAAGGAGTGCAAACAGAGGTGCTTGAGGAACTGCTCT 1339
Query 1144 TGTGTTGCTTATGCGAGTGCTTACCACGAGAGT-CAAGATGGAGCTAA-AGGGTGCTTGA 1201
|||||||||||||| |||||||||||||||||| |||| ||||| || ||| |||||||
Sbjct 1340 TGTGTTGCTTATGCAAGTGCTTACCACGAGAGTAAAAGA-GGAGC-AATAGGATGCTTGA 1397
Query 1202 CATGGCACGGCAATATGTTGGATACTAGGACATACTTGAGCTCAGGACAGGATTTCTATT 1261
|||||||| | |||||||||| | ||||||||||||||||| ||||| ||||||||
Sbjct 1398 CATGGCACAGTGGTATGTTGGATGCGAGGACATACTTGAGCTCCGGACAAGATTTCTACA 1457
Query 1262 TACGCGTAGATAAGTCAGAGTTAGCGCGGTGGAATGGAAATGGCGCATCGGGGAAGAAGA 1321
|||| ||||| ||| ||||||||| | |||||| |||| ||| ||| ||||||| ||
Sbjct 1458 TACGTGTAGACAAGGAAGAGTTAGCACTGTGGAACAGAAAGGGCTTATCAGGGAAGAGGA 1517
Query 1322 GACTTGTTTTAATTCTCATCAGTTTGATTGCAGTCGTGATGTTACT-ACTGATCAGTTTT 1380
|| | || | ||||| ||||||||| |||||| ||| |||||||| |||| ||| |||
Sbjct 1518 GAGTCCTTCTGATTCTTATCAGTTTGGTTGCAGCCGTAATGTTACTAACTG-TCA--TTT 1574
Query 1381 CACTGTTAT-T-TAAGGAAGCGAAGACAACGAACACAGTCTAACAGGCTTAGAAAAGCTC 1438
|||| | | | | ||| | || | ||| | | |||| ||||||| ||| ||||||
Sbjct 1575 ---TGTTCTGTGT-CGTAAG-GGAG-CGACG-A-A-AGTCAAACAGGCATAG--AAGCTC 1623
Query 1439 --CATCAAGCTTCGCTCCGAG-CTCTTTTGATCTTGAAGACTCATTCATACTTGAAGAGC 1495
| ||| |||||| || || | |||| ||| ||||||| ||||||| | || ||||
Sbjct 1624 TTCGGCAAACTTCGC-CCCAGTCCCTTTCGATTTTGAAGAATCATTCAGA-TT--TGAGC 1679
Query 1496 TTGAGGACAAATCAAGAAGCCGGGAGTTGCCTCTCTTTGAGCTTAGCACGATTGCTACAG 1555
| ||||| | |||| ||||||||| ||| ||||||| |||| |||||| ||| |||
Sbjct 1680 ---AAGACAAGGCGAGAAACCGGGAGTTACCTTTCTTTGATCTTAACACGATCGCTGCAG 1736
Query 1556 CAACGAATAA-TTTTGCTTTTCAAAACAAGCTTGGAGCAGGTGGTTTTGGACCTGTTTAT 1614
|| ||||||| || | ||| |||||||||||||||||||||||||| ||||| ||||||
Sbjct 1737 CAGCGAATAACTTCT-CTTCCCAAAACAAGCTTGGAGCAGGTGGTTTCGGACCCGTTTAT 1795
Query 1615 AAAGGTGTGTTACAAAATGGTATGGAAATAGCAGTGAAGAGGTTGTC-AAAAAGCTCAGG 1673
|| || ||||||||||| |||||||| ||||| |||||||||||||| ||||| ||| ||
Sbjct 1796 AAGGGCGTGTTACAAAACGGTATGGAGATAGCGGTGAAGAGGTTGTCGAAAAA-CTCGGG 1854
Query 1674 TCAAGGAATGGAAGAGTTCAAGAACGAGGTCAAGTTGATATCGAAGCTGCAGCATCGAAA 1733
||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||
Sbjct 1855 GCAAGGAATGGAAGAGTTCAAGAACGAGGTCAAGTTGATATCAAAGTTGCAGCATCGAAA 1914
Query 1734 TCTCGTGAGGATCTTAGGATGTTGTGTTGAATTTGAAGAGAAGATGTTGGTATACGAGTA 1793
||| |||||||||||||||||||| |||||||| |||||||||||||| ||||||||||
Sbjct 1915 TCTAGTGAGGATCTTAGGATGTTGCGTTGAATTGGAAGAGAAGATGTTAATATACGAGTA 1974
Query 1794 TTTACCAAACAAGAGCCTAGACTATTTCATATTCCATGAAGAGCAAAGAGCAGAGTTGGA 1853
||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||
Sbjct 1975 TTTACCAAACAAGAGCCTAGACTATTTCATATTCCATGAAGAGCAGAGAGCGGAGTTGGA 2034
Query 1854 TTGGCCAAAAAGAATGGGGATAATCCGCGGGATTGGTCGTGGAATCTTATACCTTCATCA 1913
|||||||||| | |||| ||||||||||||||||| ||||||||||||||| ||||||||
Sbjct 2035 TTGGCCAAAACGGATGGAGATAATCCGCGGGATTGCTCGTGGAATCTTATATCTTCATCA 2094
Query 1914 AGATTCAAGGCTGAGGATCATCCACAGAGACCTTAAGGCCAGCAATGTACTTCTTGACAA 1973
|||||||| ||||| |||||||||||||| || |||||||||||| ||||||||||||
Sbjct 2095 AGATTCAAAACTGAGAATCATCCACAGAGATCTCAAGGCCAGCAATATACTTCTTGACAG 2154
Query 1974 TGAAATGATACCGAAGATTGCGGATTTCGGCCTGGCTAGAATCTTCGGAGGCAACCAAAT 2033
||||||||| || |||||| ||||||||||| |||||||||||||||| || ||||||||
Sbjct 2155 TGAAATGATCCCTAAGATTTCGGATTTCGGCATGGCTAGAATCTTCGGGGGAAACCAAAT 2214
Query 2034 CGAAGGAAGCACAAATCG 2051
||||||| |||||| |||
Sbjct 2215 CGAAGGATGCACAAGTCG 2232
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 101320051700
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5