BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G11420.1
Length=1815
Score E
Sequences producing significant alignments: (Bits) Value
Ahg910897 jgi|Araly1|910897|Al_scaffold_0001_1151 1698 0.0
> Ahg910897 jgi|Araly1|910897|Al_scaffold_0001_1151
Length=1833
Score = 1698 bits (919), Expect = 0.0
Identities = 1575/1876 (84%), Gaps = 108/1876 (6%)
Strand=Plus/Plus
Query 1 ATGGAGCAGATGATATTCATTAGAAAAGAC-GACAAAGTAGAAGTTTTTTCTGAAGAAGA 59
|||||||| ||| |||| |||||||||||| | ||||||||||||| || ||||| ||
Sbjct 1 ATGGAGCAAATGGTATTTATTAGAAAAGACTG-TAAAGTAGAAGTTTATTGTGAAG-AG- 57
Query 60 AGAGTTAAAAGGGTCTTATTACAGAGCGATTCTGGAAGATAATCCAACGAAATCAGGACA 119
||||| |||| ||||| ||||||||||||||||||||| | |||||| |||||||||
Sbjct 58 -GAGTTTAAAGAGTCTTGGTACAGAGCGATTCTGGAAGATGACCCAACGGAATCAGGACG 116
Query 120 CAATAAGCTTAAAGTTCGTTACTTGACGCAGCTCAATGAA-CACCGTTTGG-CTCCTTTA 177
||| ||||||||||||||| ||||||||| |||| || || ||| |||| ||||| ||
Sbjct 117 CAAAAAGCTTAAAGTTCGTAACTTGACGCTGCTCGAT-AAGGACC-CTTGGTCTCCTCTA 174
Query 178 ACGGAATTCGTCGATCAGAGGTTCATTCGTCCTGTCCCGTCGGAGGATGTGAACGACGGC 237
|||||||||||||||||||| || ||||| |||||||| |||||||| |||||||||||
Sbjct 175 ACGGAATTCGTCGATCAGAGCTTAATTCGACCTGTCCCACCGGAGGATCTGAACGACGGC 234
Query 238 GTCGTTTTTGTAGAAGGCTTGATGGTCGACGCTTATCTCAAAGATGGGTGGTGGACTGGT 297
|||||||||| |||||| ||||||||||||||||||||||||||||||||||||||| ||
Sbjct 235 GTCGTTTTTGAAGAAGGTTTGATGGTCGACGCTTATCTCAAAGATGGGTGGTGGACTTGT 294
Query 298 GTGGTGGTAAAAACAATGGAGGATGAGAAGTTTTTGGTTTACTTCGATTGCCCACCAGAC 357
||||| | |||||| ||||||||||||| | || |||||| ||||||| ||||||||||
Sbjct 295 GTGGTAATCAAAACATTGGAGGATGAGAAATGTTGGGTTTATTTCGATTCCCCACCAGAC 354
Query 358 ATTATTCAGTTTGAGAAAAAGAAATTGAGGGTTCATCTTGATTGGACCGGCTTCAAATGG 417
|| ||| || ||||||| |||||||||||||||||||| |||||||||||||||||||||
Sbjct 355 ATCATTGAGGTTGAGAATAAGAAATTGAGGGTTCATCTCGATTGGACCGGCTTCAAATGG 414
Query 418 ATCCGACCTGATAATAAGGAATTGGTCAAGTCTGTT-TTTA--GTTGCGGGACAATGGTG 474
||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||
Sbjct 415 GTCCGACCTGATAATAAGGAATTGGTCAAGTCTGTTGTTTATAGTTGCGGGACAATGGTG 474
Query 475 GAATTGAGATTTGATTGTGCTTGGATTCCGGTAATTGTCATTAAGGAGTTGGAGAA-GGA 533
||||||||| | | || || |||| ||||||||| ||||||||||||||||||||| ||
Sbjct 475 GAATTGAGACTGGGTTTTGATTGGCTTCCGGTAACTGTCATTAAGGAGTTGGAGAATGGG 534
Query 534 CAAGAGGTTTCTTGTCAAGTACTGGAATAAGTCCTAT-AGCTGCCG-G-G-AATCGAAAA 589
||||||||| |||||||| ||||| ||||||||| | | |||| | | | |||| | |
Sbjct 535 -AAGAGGTTTATTGTCAAGCACTGGGATAAGTCCT-TCACCTGCAGAGAGGAATC-AGGA 591
Query 590 ATT-TAATTGTTGATTCCCTAAGACTAAGGCCTATGCAGCCTCCTTTATCTGTTGGAAAG 648
|| ||| ||||||||||| || | ||||||| |||||||||||| ||||| ||| |
Sbjct 592 ATCATAACCGTTGATTCCCTTAGTGTCAGGCCTAAGCAGCCTCCTTTTTCTGTCGGAGGG 651
Query 649 TATGAATTGCTGGATCATGTAGAGGCGTTTAGTGGTTTTGAATGGCGTCAAGGTGTGGTC 708
| ||| ||| ||||||||||||||| ||||||| ||||||||||||||||||||||||
Sbjct 652 TTTGATTTGTTGGATCATGTAGAGGTGTTTAGTCATTTTGAATGGCGTCAAGGTGTGGTG 711
Query 709 AGGGGAATTGTCTTTGAGGGAAGGTACATGGTAAGTTTCGGGGCAACAAAGGAGGCATCG 768
||||||||||||||||||||| | ||||||||||||||||||||||||| || || |||
Sbjct 712 AGGGGAATTGTCTTTGAGGGACGATACATGGTAAGTTTCGGGGCAACAAGGGCCGCGTCG 771
Query 769 CAATTTAATCACTCTGATATTAGGCCTCCAATGGAGTGGGAAGATGGAGTTTGGCATAAA 828
||||| | ||| || ||| |||||||||||||||||||| ||||||||||||||||||||
Sbjct 772 CAATTCAGTCATTCAGATCTTAGGCCTCCAATGGAGTGGAAAGATGGAGTTTGGCATAAA 831
Query 829 AGAACAAAGCCAAAACGCCAGAAAGAAACTTCTTTAGACGGCAACAGAAA----T--GTG 882
| ||||||||||||| | || ||| ||||||||||||||||||| ||||| | |||
Sbjct 832 ATAACAAAGCCAAAAGGTCAAAAAAAAACTTCTTTAGACGGCAAAAGAAACAAGTCAGTG 891
Query 883 -CA--G-ACA----AA--G-G-A-ACCA-----C--C-GGGAAATGAGATGGCTGATGAT 921
| | ||| || | | | || | | | |||||||| ||||||| | |||
Sbjct 892 GCTTTGGACACTGGAAATGTGCAGACAAAGGAACTGCCGGGAAATGGGATGGCTAACGAT 951
Query 922 GT-G-AAA--AAAGA--ATCTGGTTTACCTATAACCCTGGGGGTAACTGCAACAAAGAAC 975
|| | ||| ||| | |||||||| || |||||||| ||| | |||||||||| ||||
Sbjct 952 GTAGTAAATGAAAAAGGATCTGGTTCACATATAACCCAGGGCATGACTGCAACAATGAAC 1011
Query 976 AAAACCCAAGGAAAGGTATCCCCTGTGCCAATGAAGAAT------GGCTTTG-GAAATGA 1028
|||||||| |||||| ||||||||| ||||||||||||| |||| | |||||||
Sbjct 1012 AAAACCCAGGGAAAGATATCCCCTGAGCCAATGAAGAATCAAATTGGCTC-GAGAAATGA 1070
Query 1029 GTCAACTCGAGAGAAG-ATGCCTGAGGAGCCTAAGATCAAATATTATACTCGAAAGAGGA 1087
| |||||||||||||| || | | ||| ||| | | | | ||||| |||||||
Sbjct 1071 GCCAACTCGAGAGAAGCAT---T-AC-AGCA-AAG-T----T-T-ACACTCGGAAGAGGA 1117
Query 1088 AAAGAGGAGGTCTA-AAGCTCAATTCATACATCAATAAGACTGTGTTATCCTCGGATCGG 1146
| |||||| ||| || | ||||||| || ||||| |||||||||||||||| ||||||
Sbjct 1118 AGAGAGGACAACTAGAA-CACAATTCAGACCTCAATGAGACTGTGTTATCCTCAGATCGG 1176
Query 1147 ACCCCCAATGTGGTGAAGAAT-TCTGCTTCTAATGCTGAGGAAAACCATGCAAAACACAC 1205
||||||||||||||||||||| | || |||||||| |||||||||||| ||||| | ||
Sbjct 1177 ACCCCCAATGTGGTGAAGAATGT-TGGTTCTAATGTTGAGGAAAACCAAGCAAAGGATAC 1235
Query 1206 A-ATAATGGTTTTGCCTTTTGCAAAGAAGTCACCG-GTCTGGAAGACT-TATGAATCA-C 1261
| | ||||||||||||||| | |||||||||||| || ||||||| | ||||||||| |
Sbjct 1236 AGA-AATGGTTTTGCCTTTCGTGAAGAAGTCACCGTGT-TGGAAGA-TATATGAATCAAC 1292
Query 1262 TGGAGGTCTTCAAAAGTGTATCACACAGTCTTCATTTCAGCCCATTGTTTGAGACTAA-G 1320
| ||||||||||||| ||| |||| |||| ||||||||||||||| || ||| ||| |
Sbjct 1293 CG-AGGTCTTCAAAAGAGTACCACAAAGTCCTCATTTCAGCCCATTATTAAAGAGTAAAG 1351
Query 1321 CAAGATTTCCGTGAAGGGTATGCAATAGGTATGATGGTGACTTATTTTGGGTTACTGGAG 1380
||||||||||||||||||||||| ||||| ||||||||| ||||| |||||||||||||
Sbjct 1352 -AAGATTTCCGTGAAGGGTATGCATTAGGTCTGATGGTGATTTATTCTGGGTTACTGGAG 1410
Query 1381 AAATTTAAAGATCTTGAAGCCGACGTTCCTGTAAGCCAACTAAATAGCCTTAAAGATTCA 1440
|||||||||||||||||| |||||||||| ||||||||||| ||||||| |||||||||
Sbjct 1411 AAATTTAAAGATCTTGAAACCGACGTTCCCCTAAGCCAACTACATAGCCTCAAAGATTCA 1470
Query 1441 TTTTCGGAGCTCGAGAAACATGGCTTCAATGTTACAACTCCATTATCACGGATCGACAAG 1500
||||| ||||| |||||| | || |||| ||||||||| | ||||||||||||||||||
Sbjct 1471 TTTTCAGAGCTAGAGAAATACGGTTTCAGTGTTACAACGGCTTTATCACGGATCGACAAG 1530
Query 1501 CTGTTAGCACTCAAAGATAGACAACTATATATAATGGAGGAACTAAAAGGTTTTGACAAG 1560
||||| ||||||||||||||||||||| ||||| |||||||||||||||||||||||||
Sbjct 1531 CTGTTGGCACTCAAAGATAGACAACTAAATATATTGGAGGAACTAAAAGGTTTTGACAAA 1590
Query 1561 GAGATGACAAATGAATTTAGCAAGGCTAAAC-AAGAGTTTGATGACATGGAACAAAAGAT 1619
|||||||| |||||| ||||| | ||| | || || | | | | | ||| || |
Sbjct 1591 GAGATGACGGATGAATATAGCA-G--TAATCGAA-AG---GCT-A-A---A-CAAGAGTT 1637
Query 1620 TCTTGAGGT-GAAAC-ACAAGATTATCGAGCTGCAGAGGCaagaagctgctctaaaagaa 1677
| | || | ||| | | |||||| | |||||||| ||||||||||| ||||||||| ||
Sbjct 1638 TGATAAGATAGAA-CGA-AAGATTCTTGAGCTGCATAGGCAAGAAGCCGCTCTAAAAAAA 1695
Query 1678 caaaaggaagcagaaaaagaacagaaagatgcagcctggaaaaagaTATGTCAGATGGAG 1737
||||| ||||||| ||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 1696 CAAAAAGAAGCAGCAAAAGAACAGAAAGATGCAGCCTACAAAAAGATATGTCAGATGGAG 1755
Query 1738 TCATGTGCAAAAGATCTCAATGTAGAGCTTGAAGATGTGGAGTTTGAGTTTGAGACAATT 1797
||||| ||||||||||| ||||||||||||||| |||||||||||||||||||||||||
Sbjct 1756 TCATGCGCAAAAGATCTTGATGTAGAGCTTGAAGGTGTGGAGTTTGAGTTTGAGACAATT 1815
Query 1798 TTGTCGGCTCCTTGGT 1813
||||||||||| ||||
Sbjct 1816 TTGTCGGCTCCCTGGT 1831
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 68143448305
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5