BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G11430.1
Length=953
Score E
Sequences producing significant alignments: (Bits) Value
Ahg471280 jgi|Araly1|471280|fgenesh2_kg.1__1234__AT1G11430.1 1343 0.0
> Ahg471280 jgi|Araly1|471280|fgenesh2_kg.1__1234__AT1G11430.1
Length=920
Score = 1343 bits (727), Expect = 0.0
Identities = 869/935 (93%), Gaps = 20/935 (2%)
Strand=Plus/Plus
Query 4 ACTCTCTCTTCGATTTCAGCAATTGCAATGGCTTCCTTCACAACAACTTCTTCTTCCTCG 63
||||||||||||||||| ||| || ||||||||||||| |||||| |||| |||||||||
Sbjct 1 ACTCTCTCTTCGATTTCTGCAGTTTCAATGGCTTCCTTAACAACATCTTCGTCTTCCTCG 60
Query 64 CTTC-TCCTCAAAACTCTTCTCCCCGTAAGCCACCTGAATCGTTTCTCTACACTCTCTGG 122
|||| ||| |||||| ||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 61 CTTCTTCC-CAAAACACTTCTCCCCGTAAGCCACCTGAATCGTTTCTCTACACTCTCCGG 119
Query 123 TATCCGCGTTGGCGATTCATGGACTCCTCTGCTCCGGAACATCTCCACCGCTGGGTCTCG 182
||||||||||||||| ||||||| |||||||| |||| |||||||||||||||||||||
Sbjct 120 TATCCGCGTTGGCGACACATGGACACCTCTGCTTCGGAGCATCTCCACCGCTGGGTCTCG 179
Query 183 GCGTCGAGTGGCGATTGTGAAAGCTGCGACGGTGGATTCGGATTACTCGTCGAAACGGAG 242
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 180 GCGTCGGGTGGCGATTGTGAAAGCTGCGACGGTGGATTCGGATTACTCGTCGAAACGGAG 239
Query 243 CAATAGCAATGAGCAGAGAGAGACGATTATGCTTCCTGGTTGCGATTACAATCATTGGCT 302
| ||| |||||||||||||||||||||||||||||||| || |||||||||||||||||
Sbjct 240 TAGTAGTAATGAGCAGAGAGAGACGATTATGCTTCCTGGATGTGATTACAATCATTGGCT 299
Query 303 CATTGTAATGGAGTTTCCTAAAGATCCAGCGCCAAGTAGGGATCAGATGATTGATACTTA 362
|||||||||||||||||||||||||||| |||| ||| || |||||||||||||||||
Sbjct 300 TGTTGTAATGGAGTTTCCTAAAGATCCAGCTCCAACTAGAGACCAGATGATTGATACTTA 359
Query 363 CCTTAACACTCTTGCTACTGTTCTTGGCAGCATGGAAGAGGCGAAGAAGAACATGTATGC 422
|||||||||||| |||||||||||||| |||||||||||||| |||||||||||||||||
Sbjct 360 CCTTAACACTCTAGCTACTGTTCTTGGAAGCATGGAAGAGGCAAAGAAGAACATGTATGC 419
Query 423 ATTCAGTACCACGACATATACTGGATTCCAATGCACCATCGACGAAGAAACATCTGAGAA 482
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 420 ATTCAGTACCACCACATATACTGGATTCCAATGCACCATCGACGAAGAAACATCTGAGAA 479
Query 483 GTTCAAGGGTTTGCCTGGAGTTCTCTGGGTCTTGCCTGACTCCTACATAGATGTCAAGAA 542
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 480 GTTCAAGGGTTTGCCTGGAGTTCTCTGGGTCTTGCCTGACTCCTACATAGATGTTAAGAA 539
Query 543 CAAAGACTATGGAGGCGACAAGTACATCAATGGAGAGATTATCCCGTGCACATACCCAAC 602
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 540 CAAAGACTATGGAGGCGACAAGTACATCAATGGAGAGATTATCCCGTGCACATACCCGAC 599
Query 603 ATACCAACCAAAGCAGCGCAATAACACTAAGTATCAAAGTAAGAGATACGAAAGAAAAAG 662
||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||
Sbjct 600 ATACCAACCAAAGCAGCGCAATAACACAAAGTATCAAAGTAAGAGGTACGAAAGAAAAAG 659
Query 663 AGACGGTCCTCCACCTCCTGAACAGAGGAAACCAAGACAAGAACCAGCAGCCTCTGATTC 722
||||||||||||||| |||||||||||||||||||||||||||||||| || ||||||||
Sbjct 660 AGACGGTCCTCCACCACCTGAACAGAGGAAACCAAGACAAGAACCAGCCGCTTCTGATTC 719
Query 723 CTCTTAAACTATAATAAGATAATGGAGTGTTTGCAAGTTTTGATCTTTTGGTTAG-CACT 781
||||||||| || ||||||||||||| |||||||||||||||||||||||||||| | ||
Sbjct 720 CTCTTAAACGATGATAAGATAATGGAATGTTTGCAAGTTTTGATCTTTTGGTTAGTCCCT 779
Query 782 TAGCTTGTTGAAGTCGTGTGTAAAATCGTCTAGTACC-AAATGATGATACTGT-ATCATC 839
|||||| ||||||||| |||||||||||||||||||| ||||||||||||| | ||||||
Sbjct 780 TAGCTTATTGAAGTCGGGTGTAAAATCGTCTAGTACCCAAATGATGATACTATCATCATC 839
Query 840 ACACCTTGAACAATAGCTATTGTTATGTTAGGATGAAATTCAACTTGAACCATTTGTTTA 899
||||||||||||||| || | | | |||| ||||||||||||||||||||||
Sbjct 840 ACACCTTGAACAATA--TA--G----G--A---TGAACTTCAACTTGAACCATTTGTTTA 886
Query 900 TTTAGG-TAATGTTCGGTTTTGGTTTGGTTTGATT 933
|||||| || |||| || |||||||||||||||||
Sbjct 887 TTTAGGATA-TGTTTGGCTTTGGTTTGGTTTGATT 920
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 35378066976
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5