BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G11440.1
Length=1303
Score E
Sequences producing significant alignments: (Bits) Value
Ahg471281 jgi|Araly1|471281|fgenesh2_kg.1__1235__AT1G11440.1 1917 0.0
> Ahg471281 jgi|Araly1|471281|fgenesh2_kg.1__1235__AT1G11440.1
Length=1284
Score = 1917 bits (1038), Expect = 0.0
Identities = 1222/1307 (93%), Gaps = 28/1307 (2%)
Strand=Plus/Plus
Query 2 TTTTCTCTCATCAACCGCAGAGAAAGACTTTCAAGATCATCCTTCAAGCTCTCTCAAATG 61
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1 TTTTCTCTCATCAACCGCAGAGATAGACTTTCAAGATCATCCTTCAAGCTCTCTCAAATG 60
Query 62 GCCAACTTCTATGAGAATTACCAGAGTCCTTACGATTACAATCAGGTTAATAATCTCTAC 121
||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 61 GCCAATTTCTATGAGAATTACCAGATTCCTTACGATTACAATCAGGTTAATAATCTCTAC 120
Query 122 GATCAAAATCATTATCATTACAATCAACAGCAGCAGCAGCTTGGTTTCGAACCAATGAGT 181
||||||||||||||||||||||| | || ||||||||||||||||||||||||||||||
Sbjct 121 GATCAAAATCATTATCATTACAA-C--CAACAGCAGCAGCTTGGTTTCGAACCAATGAGT 177
Query 182 TATAATTATTACAACTGGAATGAATCTGAATCTGAATCTGAATATGTTGCTTACTCTGGT 241
||||| ||||| ||||||||| | ||||||||||||||||||| ||||||||||||||||
Sbjct 178 TATAACTATTATAACTGGAATCATTCTGAATCTGAATCTGAATCTGTTGCTTACTCTGGT 237
Query 242 TATGATGATCCAATGAGTTATAATTGTTATAACTGGAATGGATCCGAGTCTGAGACAACC 301
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 238 TATGATGATCCAATGAGTTATAATTGTTATAACTGGAATGGATCTGAGTCTGAGACAACC 297
Query 302 TCTGCATATGTTGCTTACTCTGTTTCTACCATGTCTGAGCCTAAACACTTGTTCTATGAT 361
||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 298 TCTGCATCTATTGCTTACTCTGTTTCTACCATGTCTGAGCCTAAACACTTGTTCTATGAT 357
Query 362 CCGAATCTCTAT---ACAACCTACGAATCTCCTCCTCAGTTTAGTATCTATTGCTCTGTA 418
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 358 CCGAATCTCTATACAACAACCTACGAATCTCCTCCTCAGTTTAGTATCTATTGCTCTGTA 417
Query 419 GCCTCTGCTCTTGACTTCAACGAGCCGGAATTCGATGAATACGATCCCACGCCGTACGGT 478
|||||||||||||||||||||||||||||||||||||| || ||||| ||||||||||||
Sbjct 418 GCCTCTGCTCTTGACTTCAACGAGCCGGAATTCGATGATTATGATCCGACGCCGTACGGT 477
Query 479 GGTGGCTACGATGTTGTTGCAACCTATGGAAAACCTCTTCCTCCATCGGTGGAAACTTGT 538
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 478 GGTGGCTACGACGTTGTTGCAACCTATGGAAAACCTCTTCCTCCATCGGTGGAAACTTGT 537
Query 539 TACCCTTGTTCAACCGCTCCTCACGCTAAAGCTCCCTCTCCTCCTGAGATTATTGCTCCT 598
||||||| |||||| |||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 538 TACCCTTCTTCAACAGCTCCTCACGCTAAAGCTCCCTCTCCTCCTGAGATTATAGCTCCT 597
Query 599 GTTCCTCTTGGAATTTATGATGGTGGTCAAAAGAATGTTGTCAAGAAACGTGTGTCTTTT 658
|||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||
Sbjct 598 GTTCCTCTTGGAATATATGATGGTGGTCAAAAGAATGTTATCAAGAAACGTGTGTCTTTC 657
Query 659 GCTGAACCGGTAGAAGAAGTCAAACCAATAGAAACCATTAAAGA-GCAAGAACAAGAACa 717
||||||||||||||||||| ||||||||| |||||||||||||| | |||||||||||||
Sbjct 658 GCTGAACCGGTAGAAGAAGCCAAACCAATGGAAACCATTAAAGAAG-AAGAACAAGAACA 716
Query 718 agacgaagattatgatgaagaaagtgaggacgaagatgatggtgatgatgatgatgaaga 777
||||||||| |||| |||||||||||||| | || |||| |||||||||| | ||
Sbjct 717 AGACGAAGAAGATGAAGAAGAAAGTGAGGA--A-GACGATG---ATGATGATGA-G--GA 767
Query 778 agaagaagaaggggatgaggaagctaaagaagaagaaaaagatCACAGTTCAAGCTATGG 837
||| | || ||||||||| ||||||||||||| |||||||||||||||||||||
Sbjct 768 AGA-G--GA------TGAGGAAGCAAAAGAAGAAGAAAGAGATCACAGTTCAAGCTATGG 818
Query 838 AAATGAGGAATATGAAG-TCGTAGATAAAGGAGAAGTGAAAGCTTTGTATGTTCCGTCTG 896
||||||| ||| |||| | ||||||||||||||||||||||||||||||||||||||||
Sbjct 819 AAATGAGAAATTTGAAACT-GTAGATAAAGGAGAAGTGAAAGCTTTGTATGTTCCGTCTG 877
Query 897 GTTACGGATTAGAAGCGACCGATCTCTGTGAGGTTATATTTGGAGGTTACTTTCCTTGTG 956
||||||| |||||||| || ||||||||||||||||||||||||||||||||||||||||
Sbjct 878 GTTACGGCTTAGAAGCAACGGATCTCTGTGAGGTTATATTTGGAGGTTACTTTCCTTGTG 937
Query 957 TGTTACGTAACAAAAGACGTCAGGAAGATGAACAAGATCGTGGGGCTGCTGTTTCTTGCT 1016
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 938 TGTTACGTAACAAAAGACGTCAGGAAGATGAACAAGATCGTGCGGCTGCTGTTTCTTGCT 997
Query 1017 GGGAAAGCAACGATTCTGATCCGTGGAAGACAACTTCCGATCACCTTTTCGGGGATTCAT 1076
||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||
Sbjct 998 GGGAAAGCAACGATTCTGATCCGTGGAAGACGACTTCCGATTACCTTTTCGGGGATTCAT 1057
Query 1077 ATCCGTACGGTTACGAGAATCGGAGCGAAAGAAATCAGTTCGAGGTCTCCTCTTATGGTT 1136
| ||||||||| |||||||| |||||||||||| | |||||||| |||| ||||||||||
Sbjct 1058 ACCCGTACGGTAACGAGAATTGGAGCGAAAGAAGTAAGTTCGAGATCTCTTCTTATGGTT 1117
Query 1137 ACCGGATGTATTAACAACCCTAGTTATCATCAGTTGTGTCAATGTGAGGTAAGAACAACA 1196
||||||||||||||| ||||||||||||||||| |||| |||||||||||||||||||||
Sbjct 1118 ACCGGATGTATTAACTACCCTAGTTATCATCAGATGTGACAATGTGAGGTAAGAACAACA 1177
Query 1197 TTCTTTTGATTATTGATGAACCTGATTTTTTAGTATCTGTTACACAAGAGATGAGATTTA 1256
|||||||||||||||||||||||||||| ||||||| | ||| |||||||||||||||||
Sbjct 1178 TTCTTTTGATTATTGATGAACCTGATTTATTAGTATATCTTATACAAGAGATGAGATTTA 1237
Query 1257 CTGTTGTATAACGAGGAGGGGTTACTTAATAATAAAACGTCGCACGC 1303
|||||||||||||||||||| |||| |||||||||||| | ||||||
Sbjct 1238 CTGTTGTATAACGAGGAGGGATTACATAATAATAAAACTTTGCACGC 1284
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 48721087926
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5