BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G11460.1
Length=1014
Score E
Sequences producing significant alignments: (Bits) Value
Ahg919961 jgi|Araly1|919961|scaffold_101242.1 1476 0.0
Ahg918864 jgi|Araly1|918864|scaffold_100145.1 1118 0.0
Ahg334438 jgi|Araly1|334438|fgenesh1_pg.C_scaffold_1001003 1013 0.0
> Ahg919961 jgi|Araly1|919961|scaffold_101242.1
Length=1051
Score = 1476 bits (799), Expect = 0.0
Identities = 944/1015 (93%), Gaps = 5/1015 (0%)
Strand=Plus/Plus
Query 1 ATGGGTGAGGATATGCGAGTAGTGAAAGTAGAATCAAAATGGCCACCGATAATAGTAATG 60
||| ||||||||||| ||| ||||||||||| ||||||||||||||| | ||||| |||
Sbjct 21 ATGAGTGAGGATATGGGAGGAGTGAAAGTAGTCTCAAAATGGCCACCGGTTATAGTTATG 80
Query 61 GTAATATCACAAGTAGCAATGGGTTCGGTGAATGCACTTGTGAAGAAAGCTCTTGATGTT 120
|| | |||||||||||| ||||| ||||||||||||||||||||||||||||| ||||||
Sbjct 81 GTGACATCACAAGTAGCGATGGGCTCGGTGAATGCACTTGTGAAGAAAGCTCTCGATGTT 140
Query 121 GGTGTGAACCATATGATCATTGGTGCTTATCGAATTGCTATTTCCTCTTTCATTCTGGCT 180
|||||||||||||||||| |||||||||||||||| ||||||||||| |||||||||||
Sbjct 141 GGTGTGAACCATATGATCGTTGGTGCTTATCGAATGGCTATTTCCTCGCTCATTCTGGCT 200
Query 181 CCTATCGCCTATATTTTGGAAAGGGAAATAATACCGGAAATAACGTTTAGGCTAATGGTC 240
||||| |||||| ||||||||||| ||||||||||| |||||||||||||||||||||||
Sbjct 201 CCTATTGCCTATTTTTTGGAAAGGAAAATAATACCGCAAATAACGTTTAGGCTAATGGTC 260
Query 241 GATCATTTCATCAGTGGATTGCTCGGGGCGAGTTTGATGCAATTTTTCTATTTGCTTGGT 300
||||||||||||||||| ||||||||||| |||||||||||||||||||||||||| |||
Sbjct 261 GATCATTTCATCAGTGGTTTGCTCGGGGCAAGTTTGATGCAATTTTTCTATTTGCTGGGT 320
Query 301 CTGTCTTACACGTCAGCAACTGTTGCGTGTGCTTTGGTAAGCTTGATGCCTGCAATCACC 360
||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 321 CTGTCGTATACGTCAGCAACTGTTGCGTGTGCTTTGGTAAGCTTGATGCCTGCAATCACC 380
Query 361 TTTGCTTTCGCTCTTATTTTGAGGACTGAAAAGATAAAAAGTCT-AAGAACCCAAGCAGG 419
|| ||||||||||||||||| ||||||||||||||||||||||| ||| |||||||||||
Sbjct 381 TTCGCTTTCGCTCTTATTTTCAGGACTGAAAAGATAAAAAGTCTAAAG-ACCCAAGCAGG 439
Query 420 AATGATAAAAGTGATGGGAACTATTATATGTATAAGTGGAGCTTTGTTCTTAACATTTTA 479
|||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||
Sbjct 440 AATGATAAAAGTGATGGGAACTATCATATGTATAGGTGGAGCTTTGTTCTTAACATTTTA 499
Query 480 CAAAGGCCCTCATATATCAAACTCTCACTCTCACCAAGAGGCTCTTCCTCACAACAACAA 539
||||||||||||||||||||||||||||||||||| | ||||||||||||||| | |||
Sbjct 500 CAAAGGCCCTCATATATCAAACTCTCACTCTCACCTACAGGCTCTTCCTCACA-C--CAA 556
Query 540 CAGCGATCACAACACAAAGAATTGGCTTCTTGGATGTCTCTACTTAACCATAGGAACCGT 599
|||| |||||||||| |||||||||||||||||||||||||||||||||||||||| |
Sbjct 557 CAGCAATCACAACACCAAGAATTGGCTTCTTGGATGTCTCTACTTAACCATAGGAATAAT 616
Query 600 GTTGATATCTCTATGGATTTTGTTTCAAGGGACTTTAAGCATCAAGTACCCTTGCAAATT 659
|||| | ||||||||||| ||||||||||||||||||| |||||||||||||||||||||
Sbjct 617 GTTGCTGTCTCTATGGATCTTGTTTCAAGGGACTTTAAACATCAAGTACCCTTGCAAATT 676
Query 660 CTCAAGCACTTGTCTCATGTCAATTTTCGCAGCTTTTCAATGTGCTCTATTGAGTCTTTA 719
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 677 CTCAAGCACTTGTCTCATGTCAATTTTCGCAGCTTTTCAGTGTGCTCTATTGAGTCTTTA 736
Query 720 CAAGAGTAGAGATGTTAAAGATTGGATCATCGATGATAGATTTGTGATCGGTGTCATCGT 779
||||||||||||| ||||| ||||||||||||||||| ||||||||||||||||||||||
Sbjct 737 CAAGAGTAGAGATCTTAAACATTGGATCATCGATGATGGATTTGTGATCGGTGTCATCGT 796
Query 780 ATATGCTGGAGTGATAGGACAAGCAATGTCGACGGTATCAGTGACATGGGGGGTGAAGAA 839
||||||||||||||||||||||||||||||||| ||| ||| ||||||||| | ||||
Sbjct 797 ATATGCTGGAGTGATAGGACAAGCAATGTCGACTGTAGCAGCGACATGGGGAATAAAGAG 856
Query 840 ATTAGGAGCTGTTTTCGTATCAGCAATTATGCCAATAGCTCTCATTTCGGCTAGTCTATT 899
||||||||||||||||| |||||||||||||||| | |||| |||||||||| ||||||
Sbjct 857 ATTAGGAGCTGTTTTCGCATCAGCAATTATGCCAGTTTCTCTAATTTCGGCTACTCTATT 916
Query 900 CGATTTCATAATCTTACACACTCCTTTATACCTCGGAAGTCTGATTGGATCAGTAGGGAC 959
||||||| |||||||| ||||||||||||||||||||||| ||||||||||||||| ||
Sbjct 917 CGATTTCCTAATCTTAGACACTCCTTTATACCTCGGAAGTGTGATTGGATCAGTAGTAAC 976
Query 960 AATAACAGGTCTCTACGTGTTCTTGTGGGGTAAGAACAAAGATATGGAAGCATAA 1014
||||| |||||| ||||||||||||||||||||||||||||| ||||||||||||
Sbjct 977 AATAATAGGTCTTTACGTGTTCTTGTGGGGTAAGAACAAAGAAATGGAAGCATAA 1031
> Ahg918864 jgi|Araly1|918864|scaffold_100145.1
Length=1127
Score = 1118 bits (605), Expect = 0.0
Identities = 888/1023 (87%), Gaps = 25/1023 (2%)
Strand=Plus/Plus
Query 1 ATGGGTG-AGGATATGCGAGTAGTGAAAGTAGAATCAAAATGGCCACCGATAATAGTAAT 59
||||||| ||| |||| | ||||| ||||| | ||||| ||||| | ||||| ||
Sbjct 22 ATGGGTGAAGG-TATGATTGGAGTGAGAGTAGTAGAAAAATATTCACCGGTCATAGTGAT 80
Query 60 GGTAATATCACAA-GTAGCAATGGGTTCGGTGAATGCACTTGTGAAGAAAGCTCTTGATG 118
||| || ||| || ||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 81 GGTGATGTCA-AACGTAGCGATGGGTTCGGTGAATGCACTTGTGAAGAAAGCTCTTGATG 139
Query 119 TTGGTGTGAACCATATGATCATTGGTGCTTATCGAATTGCTATTTCCTCTTTCATTCTGG 178
||||||||||||||||| ||||||||||||||||||| ||||||||| |||||||| |||
Sbjct 140 TTGGTGTGAACCATATGGTCATTGGTGCTTATCGAATGGCTATTTCCGCTTTCATTTTGG 199
Query 179 CTCC-TATCGCCTATATTTTGGAAAGGGAAATAATACCGGAAATAACGTTTAGGCTAATG 237
||| | | |||||||| ||||||||| ||| || ||| | ||||||||||||||||||
Sbjct 200 TTCCCTTT-GCCTATATCTTGGAAAGGAAAACAAGACCACAGATAACGTTTAGGCTAATG 258
Query 238 GTCGATCATTTCATCAGTGGA-TTGCTCGGGGCGAGTTTGATGCAATTTTTCTATTTGCT 296
||||||||||| ||||||| || |||||||||||||||||||||||||||| ||||||
Sbjct 259 ATCGATCATTTCGTCAGTGGCCTT-CTCGGGGCGAGTTTGATGCAATTTTTCTTTTTGCT 317
Query 297 TGGTCTGTCTTACACGTCAGCAACTGTTGCGTGTGCTTTGGTAAGCTTGATGCCTGCAAT 356
||||||||| |||||||||||||||||| ||||||||||||||||| || ||||||||||
Sbjct 318 TGGTCTGTCGTACACGTCAGCAACTGTTTCGTGTGCTTTGGTAAGCATGTTGCCTGCAAT 377
Query 357 CACCTTTGCTTTCGCTCTTATTTTGAGGACTGAAAA-GATAAAAAGTCTAA-GAACCCAA 414
|||||| ||||| || |||||||| ||||||||||| | |||| | ||||| || || ||
Sbjct 378 CACCTTCGCTTTGGCCCTTATTTTCAGGACTGAAAATG-TAAAGATTCTAAAGA-CCAAA 435
Query 415 GCAGGAATGATAAAAGTGATGGGAACTATT-ATATGTATAAGTGGAGCTTTGTTCTTAAC 473
||||||||| | || ||||| |||||| || |||||||||||||||||||||||||||||
Sbjct 436 GCAGGAATGTTGAAGGTGATTGGAACT-TTGATATGTATAAGTGGAGCTTTGTTCTTAAC 494
Query 474 ATTTTACAAAGGCCCTCATATATCAAACTCTCACTCTCACCAAGAGGCTCTTCCTCACAA 533
||||||||||||||| || ||||||||||||||||||||| ||||||| | || |||||
Sbjct 495 ATTTTACAAAGGCCCACAAATATCAAACTCTCACTCTCACGGAGAGGCT-T-CC-CACAA 551
Query 534 CAACAACAGCGATCA---CAACACAAAGAATTGGCTTCTTGGATGTCTCTACTTAACCAT 590
||| || | |||||| |||| | || |||||||||||||||||||| |||||||||||
Sbjct 552 CAA-AA-A-CGATCAAGACAACGCCAATAATTGGCTTCTTGGATGTCTTTACTTAACCAT 608
Query 591 AGGAACCGTGTTGATATCTCTATGGATTTTGTTTCAAGGGACTTTAAGCATCAAGTACCC 650
|||||| |||||| ||||||||||||| |||||||||||||||||||| || ||||||||
Sbjct 609 AGGAACTGTGTTGCTATCTCTATGGATGTTGTTTCAAGGGACTTTAAGTATTAAGTACCC 668
Query 651 TTGCAAATTCTCAAGCACTTGTCTCATGTCAATTTTCGCAGCTTTTCAATGTGCTCTATT 710
|||||||| ||| ||||||||||| |||||||| ||||| || || ||||||||||| ||
Sbjct 669 TTGCAAATACTCGAGCACTTGTCTTATGTCAATCTTCGCGGCATTCCAATGTGCTCTCTT 728
Query 711 GAGTCTTTACAAGAGTAGAGATGTTAAAGATTGGATCATCGATGATAGATTTGTGATCGG 770
|||||||||||| || ||||| ||||| ||||||||||||||||||||||| ||||||
Sbjct 729 GAGTCTTTACAAAAGCAGAGACGTTAATGATTGGATCATCGATGATAGATTCGTGATCAC 788
Query 771 TGTCATCGTATATGCTGGAGTGATAGGACAAGCAATGTCGACGGTATCAGTGACATGGGG 830
|||||| |||| ||||||||| ||||||||||||||||||||||| || ||||||||
Sbjct 789 CGTCATCATATACGCTGGAGTGGTAGGACAAGCAATGTCGACGGTAGCAACAACATGGGG 848
Query 831 GGTGAAGAAATTAGGAGCTGTTTTCGTATCAGCAATTATGCCAAT-AGCTCTCATTTCGG 889
| | ||||||||||||||||| |||| ||| ||| || | ||| | | ||||||||||||
Sbjct 849 GATAAAGAAATTAGGAGCTGTGTTCGCATCGGCATTTTTTCCACTTA-CTCTCATTTCGG 907
Query 890 CTAGTCTATTCGATTTCATAATCTTACACACTCCTTTATACCTCGGAAGTCTGATTGGAT 949
||| |||||| |||||| |||| |||||||||||||||||||| |||||| |||||||||
Sbjct 908 CTACTCTATTTGATTTCCTAATTTTACACACTCCTTTATACCTTGGAAGTGTGATTGGAT 967
Query 950 CAGTAGGGACAATAACAGGTCTCTACGTGTTCTTGTGGGGTAAGAACAAAGATATGGAAG 1009
|| ||| ||| ||||| ||||||||| |||| |||||||| ||||||||||| | ||||
Sbjct 968 CACTAGTGACCATAACGGGTCTCTACATGTTTTTGTGGGGCAAGAACAAAGAAACGGAAT 1027
Query 1010 CAT 1012
|||
Sbjct 1028 CAT 1030
> Ahg334438 jgi|Araly1|334438|fgenesh1_pg.C_scaffold_1001003
Length=831
Score = 1013 bits (548), Expect = 0.0
Identities = 622/655 (95%), Gaps = 16/655 (2%)
Strand=Plus/Plus
Query 368 TCGCTCT-TATTTT-G--AGGACTGAAAAGATAAAAAGTCT-AAGAACCCAAGCAGGAAT 422
|||| || |||||| | ||||||||||| ||||||||||| ||| ||||||||||||||
Sbjct 185 TCGC-CTATATTTTGGAAAGGACTGAAAAAATAAAAAGTCTAAAG-ACCCAAGCAGGAAT 242
Query 423 GATAAAAGTGATGGGAACTATT-ATATGTATAAGTGGAGCTTTGTTCTTAACATTTTACA 481
||||||||||||||||||| || |||||||||||||||||||||||||| |||||||||
Sbjct 243 GATAAAAGTGATGGGAACT-TTAATATGTATAAGTGGAGCTTTGTTCTTGGCATTTTACA 301
Query 482 AAGGCCCTCATATATCAAACTCTCACTCTCACCAAGAGGCTCTTCCTCACAACAACAACA 541
|||||||||||||||||||||||||||||||||||||||||||| |||||||| | || |
Sbjct 302 AAGGCCCTCATATATCAAACTCTCACTCTCACCAAGAGGCTCTTTCTCACAAC-A-AA-A 358
Query 542 GCGATCACAACA-CAAAGAATTGGCTTCTTGGATGTCTCTACTTAACCATAGGAACCGTG 600
|||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 359 GCGATCACAACACCAAA-AATTGGCTTCTTGGATGTCTCTACTTAACCATAGGAACCGTG 417
Query 601 TTGATATCTCTATGGATTTTGTTTCAAGGGACTTTAAGCATCAAGTACCCTTGCAAATTC 660
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 418 TTGATATCTCTATGGATTTTGTTTCAAGGGACTTTAAGCATCAAGTACCCTTGCAAATTC 477
Query 661 TCAAGCACTTGTCTCATGTCAATTTTCGCAGCTTTTCAATGTGCTCTATTGAGTCTTTAC 720
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||
Sbjct 478 TCAAGCACTTGTCTCATGTCAATTTTCGCAGCTTTTCAGTGTGCTCTATTGAGTCTCTAC 537
Query 721 AAGAGTAGAGATGTTAAAGATTGGATCATCGATGATAGATTTGTGATCGGTGTCATCGTA 780
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 538 AAGAGTAGAGATGTTAAAGATTGGATCATCGATGATAGATTTGTGATCGGTGTCATCGTA 597
Query 781 TATGCTGGAGTGATAGGACAAGCAATGTCGACGGTATCAGTGACATGGGGGGTGAAGA-A 839
||||||||||||||||||||||||||||| |||||||| ||||||||||| || || | |
Sbjct 598 TATGCTGGAGTGATAGGACAAGCAATGTCAACGGTATCGGTGACATGGGGAGTAAA-ACA 656
Query 840 ATTAGGAGCTGTTTTCGTATCAGCAATTATGCCAATAGCTCTCATTTCGGCTAGTCTATT 899
|||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||
Sbjct 657 ATTAGGAGCTGTTTTCGTATCAGCAATTATGCCAATTGCTCTCATTTCGGCTACTCTATT 716
Query 900 CGATTTCATAATCTTACACACTCCTTTATACCTCGGAAGTCTGATTGGATCAGTAGGGAC 959
||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||| |
Sbjct 717 CGATTTCCTAATCTTACACACTCCTTTATACCTCGGAAGTCTGATTGGATCAGTTGGGCC 776
Query 960 AATAACAGGTCTCTACGTGTTCTTGTGGGGTAAGAACAAAGATATGGAAGCATAA 1014
||||| |||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 777 AATAATAGGTCTCTACGTGTTCTTGTGGGGTAAGAACAAAGAAATGGAAGCATAA 831
Score = 322 bits (174), Expect = 3e-87
Identities = 194/204 (95%), Gaps = 0/204 (0%)
Strand=Plus/Plus
Query 1 ATGGGTGAGGATATGCGAGTAGTGAAAGTAGAATCAAAATGGCCACCGATAATAGTAATG 60
||||||||||||||||||| || |||||||| ||||||||||||||||| |||||||||
Sbjct 1 ATGGGTGAGGATATGCGAGGAGAGAAAGTAGTCTCAAAATGGCCACCGATTATAGTAATG 60
Query 61 GTAATATCACAAGTAGCAATGGGTTCGGTGAATGCACTTGTGAAGAAAGCTCTTGATGTT 120
||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 TTAATATCTCAAGTAGCGATGGGTTCGGTGAATGCACTTGTGAAGAAAGCTCTTGATGTT 120
Query 121 GGTGTGAACCATATGATCATTGGTGCTTATCGAATTGCTATTTCCTCTTTCATTCTGGCT 180
|||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||
Sbjct 121 GGTGTGAACCATATGATCGTTGGTGCTTATCGAATGGCTATTTCCTCTTTCATTCTGGCT 180
Query 181 CCTATCGCCTATATTTTGGAAAGG 204
||||||||||||||||||||||||
Sbjct 181 CCTATCGCCTATATTTTGGAAAGG 204
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 37703564913
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5