BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT1G11470.1 Length=747 Score E Sequences producing significant alignments: (Bits) Value Ahg334440 jgi|Araly1|334440|fgenesh1_pg.C_scaffold_1001005 296 1e-79 > Ahg334440 jgi|Araly1|334440|fgenesh1_pg.C_scaffold_1001005 Length=594 Score = 296 bits (160), Expect = 1e-79 Identities = 249/291 (86%), Gaps = 9/291 (3%) Strand=Plus/Plus Query 227 GGCGGATCTCGTCAGCTCGGCAAAGCAGCTT-ACATGGAAGGCAAACATGTAGATGCTCT 285 ||||||||||||||||||||||||||||||| |||||||||||||| | ||||||| || Sbjct 270 GGCGGATCTCGTCAGCTCGGCAAAGCAGCTTCTCATGGAAGGCAAACGTCTAGATGCCCT 329 Query 286 CCAGATCTTTATGTGGATGC-ATAGAAAGGAGATGAGTTTCTCTACCTCTGAGGTTGCAC 344 |||||||||||||||||| | |||||||| |||||| ||| ||| |||| ||| |||| | Sbjct 330 CCAGATCTTTATGTGGAT-CTATAGAAAGAAGATGATTTTTTCTCCCTCGGAGCTTGCGC 388 Query 345 TCTTTGTGGATATCATTGGTAACACTATCGGCATAGCTGCTGCTCACTCCTACTTGAAGA 404 | |||||||||||| ||| || ||||| ||| || || |||||||| |||||||||||| Sbjct 389 TTTTTGTGGATATCTTTGCTAGGACTATAGGCTTACCTACTGCTCACGCCTACTTGAAGA 448 Query 405 AAGTAGACCCAAACTGCGACCAAATGCACAATCGTACCGAGAATTGGCCTGCTTTCGT-G 463 ||||||||||| ||||||||| ||||||||||| |||||||||||||||||||| ||| | Sbjct 449 AAGTAGACCCAGACTGCGACCGAATGCACAATCCTACCGAGAATTGGCCTGCTTACGTAG 508 Query 464 -TCTCTCGTGAAGTTGGAGACTAAGCTGTTAAAGGAAAA-CGGGATAGTTC 512 |||| | || ||||| ||| |||| ||| || ||| ||||||||||| Sbjct 509 ATCTC-C-TGCTTTTGGATACTGAGCTTTTAGAG-AAACGCGGGATAGTTC 556 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 27524746074 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5