BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G11470.1
Length=747
Score E
Sequences producing significant alignments: (Bits) Value
Ahg334440 jgi|Araly1|334440|fgenesh1_pg.C_scaffold_1001005 296 1e-79
> Ahg334440 jgi|Araly1|334440|fgenesh1_pg.C_scaffold_1001005
Length=594
Score = 296 bits (160), Expect = 1e-79
Identities = 249/291 (86%), Gaps = 9/291 (3%)
Strand=Plus/Plus
Query 227 GGCGGATCTCGTCAGCTCGGCAAAGCAGCTT-ACATGGAAGGCAAACATGTAGATGCTCT 285
||||||||||||||||||||||||||||||| |||||||||||||| | ||||||| ||
Sbjct 270 GGCGGATCTCGTCAGCTCGGCAAAGCAGCTTCTCATGGAAGGCAAACGTCTAGATGCCCT 329
Query 286 CCAGATCTTTATGTGGATGC-ATAGAAAGGAGATGAGTTTCTCTACCTCTGAGGTTGCAC 344
|||||||||||||||||| | |||||||| |||||| ||| ||| |||| ||| |||| |
Sbjct 330 CCAGATCTTTATGTGGAT-CTATAGAAAGAAGATGATTTTTTCTCCCTCGGAGCTTGCGC 388
Query 345 TCTTTGTGGATATCATTGGTAACACTATCGGCATAGCTGCTGCTCACTCCTACTTGAAGA 404
| |||||||||||| ||| || ||||| ||| || || |||||||| ||||||||||||
Sbjct 389 TTTTTGTGGATATCTTTGCTAGGACTATAGGCTTACCTACTGCTCACGCCTACTTGAAGA 448
Query 405 AAGTAGACCCAAACTGCGACCAAATGCACAATCGTACCGAGAATTGGCCTGCTTTCGT-G 463
||||||||||| ||||||||| ||||||||||| |||||||||||||||||||| ||| |
Sbjct 449 AAGTAGACCCAGACTGCGACCGAATGCACAATCCTACCGAGAATTGGCCTGCTTACGTAG 508
Query 464 -TCTCTCGTGAAGTTGGAGACTAAGCTGTTAAAGGAAAA-CGGGATAGTTC 512
|||| | || ||||| ||| |||| ||| || ||| |||||||||||
Sbjct 509 ATCTC-C-TGCTTTTGGATACTGAGCTTTTAGAG-AAACGCGGGATAGTTC 556
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 27524746074
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5