BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT1G11475.1

Length=562
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg471284 jgi|Araly1|471284|fgenesh2_kg.1__1238__AT1G11475.1         619    6e-177


> Ahg471284 jgi|Araly1|471284|fgenesh2_kg.1__1238__AT1G11475.1
Length=410

 Score =  619 bits (335),  Expect = 6e-177
 Identities = 392/418 (94%), Gaps = 9/418 (2%)
 Strand=Plus/Plus

Query  14   AGCTCAAAGTTGTACTTGACCTTTTTAAAGAAGCACGAAACGAA-AAACCCTAAAATTCC  72
            ||||||||||||| ||| ||||||||||||||||||||||| || ||||||||||| || 
Sbjct  1    AGCTCAAAGTTGTTCTTCACCTTTTTAAAGAAGCACGAAAC-AATAAACCCTAAAA-TCG  58

Query  73   CAAGCAGAGAAAGAGAGACAGAGCAAGTACAGATTTCAACTAGCTCAAGATGATCATCCC  132
            | |||||||  ||||||||    ||||||||||||| |  | ||||||||||||||||||
Sbjct  59   CTAGCAGAG--AGAGAGAC----CAAGTACAGATTTTAGTTTGCTCAAGATGATCATCCC  112

Query  133  TGTTCGTTGCTTTACTTGTGGAAAGGTGATTGGAAACAAATGGGATCAGTATCTTGATCT  192
            |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  113  TGTTCGTTGCTTCACTTGTGGAAAGGTGATTGGAAACAAATGGGATCAGTATCTTGATCT  172

Query  193  TCTCCAGCTCGACTACACTGAAGGGGACGCACTTGATGCACTCCAGCTAGTCAGATACTG  252
            ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct  173  TCTCCAGCTCGACTACACTGAAGGGGACGCACTTGATGCGCTCCAGCTAGTCAGATACTG  232

Query  253  CTGCAGGCGTATGCTAATGACTCATGTTGATCTGATTGAGAAGCTTCTCAACTACAACAC  312
            ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct  233  CTGCAGGCGTATGCTCATGACTCATGTTGATCTGATTGAGAAGCTTCTCAACTACAACAC  292

Query  313  TCTGGAGAAATCAGACAACAGTTAGAAGAGGATGCAAATCTGCTGAAAAAGTTTTCCTCT  372
            ||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||
Sbjct  293  TCTGGAGAAATCAGACAACAGTTAGAAGAGGATGCAAATCTGCTGAAAGTGTTTTCCTCT  352

Query  373  TTAGAGGCTTAAATATTAGTATGTATGAAAACATTTGGTGTATGTGGTGTAGACCCTT  430
            ||||||||||| ||||||||||||||| ||||||||||||||||||||| ||| ||||
Sbjct  353  TTAGAGGCTTATATATTAGTATGTATGGAAACATTTGGTGTATGTGGTGCAGAACCTT  410



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 20527706882


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5