BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G11480.1
Length=2171
Score E
Sequences producing significant alignments: (Bits) Value
Ahg312180 jgi|Araly1|312180|fgenesh1_pm.C_scaffold_1000960 2638 0.0
> Ahg312180 jgi|Araly1|312180|fgenesh1_pm.C_scaffold_1000960
Length=1737
Score = 2638 bits (1428), Expect = 0.0
Identities = 1643/1746 (94%), Gaps = 18/1746 (1%)
Strand=Plus/Plus
Query 220 ATGTCAAAGAAGAAATCGGCTGCCATGACGCTTAAGGACTTCCATGGCGGCTCAATACCA 279
||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1 ATGTCAAAGAAGAAAGCGGCTGCCATGACGCTTAAGGACTTCCATGGCGGCTCTATACCA 60
Query 280 TCTGATCTCCCTCTCCCTTCCGCTCCTGGAGTGACTCCGAAGGTTATTCCGGATCGACCT 339
|||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||
Sbjct 61 TCTGATCTCCCTCTCCCTTCCGCTCCTGGAGTGACTCCGAAGGTTACTCCAGATCGACCT 120
Query 340 GTTTTTGATAGAGCGCCTTGGGGGAA-TTCAATTGGCAGGCCAGATCAGAGAGCAAGACC 398
||||| ||||||||||||| |||||| |||||||||||||||||||||||| ||||| ||
Sbjct 121 GTTTTCGATAGAGCGCCTT-GGGGAACTTCAATTGGCAGGCCAGATCAGAGGGCAAGGCC 179
Query 399 GAGTTCGTCTCATGCTATTAGAAATCTCGATGATAAATCACTGTTTCTGCCTCACAATGT 458
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||
Sbjct 180 GAGTTCGTCTCATGCTATTAGAAATCTCGATGATAAATCACTGTTTCTGCCTCCCAACGT 239
Query 459 CAATATCGGACGTAATTTCAGTGAAGATGAACGGAAGCCTCTGGATGGTCACTCTGCTCC 518
||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||
Sbjct 240 GAATATCGGACGTAATTTCAGTGAGGATGAACGGAAGCCTCTGGATGGTCACTCGGCTCC 299
Query 519 TCGTAGAGTGGTCAGTGATGATGTTTTTCGGTTTGCGAATAACCGTTTGGAGATGAAAGC 578
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 300 TCGTAGAGTGGTCAGTGATGATGTTTTTCGGTTTGCGAATAACCGTTTGGAGGTGAAAGC 359
Query 579 AGACTCGGTTTTAGCTGGGAGGCATAGTGGTTGGGCAGCTGGTCCTTTGACTCATTCTGG 638
|||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||
Sbjct 360 AGACTCGGTTTTAGCTGGGAGGCATAGTGGTTGGGCGGCTGGTCATTTGACTCATTCTGG 419
Query 639 GACTGGTAATATTGAGAACTCAGTGTCAGGAAATCACTCTAATATTTGGAATGGGAGGAA 698
|||| ||| | |||||||||| |||||||||| |||||||||| ||||||||||||||||
Sbjct 420 GACTTGTATTGTTGAGAACTCGGTGTCAGGAACTCACTCTAATGTTTGGAATGGGAGGAA 479
Query 699 GGAGGTATCAGTTGCTAACAATGAGCCTGGACAGTCTCCATGGACTAAACAACCAGCTGT 758
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 480 AGAGGTATCAGTTGCTAACAATGAGCCTGGACAGTCTCCATGGACTAAACAACCAGCTGT 539
Query 759 TTCGAATTTGGTCCATACAAGTGCGCTTGACCAAGTGTCTTCAGGAGGATGGCAGTCCAA 818
||| |||||||||||||||| ||||| ||||||||||||||||||| || |||||||||
Sbjct 540 TTCTAATTTGGTCCATACAAATGCGCCTGACCAAGTGTCTTCAGGAATATTGCAGTCCAA 599
Query 819 GCTTTTGGTTCCTTCTCAGATGGGTTTTGATGTTGTTAAGCATTCAGAGATAGATACCAG 878
||||| ||||||| |||||||||| ||||||||||||||||||||||||||||| | |||
Sbjct 600 GCTTTGGGTTCCTCCTCAGATGGGATTTGATGTTGTTAAGCATTCAGAGATAGAGAGCAG 659
Query 879 AGTTTATAAGACTAATAGCCCTGTGATTAG-TCAAGGGGTTGAGCCACATGGAACACATG 937
|||||||||||||||||||| |||| || | |||||||| ||||||||||||||||||||
Sbjct 660 AGTTTATAAGACTAATAGCCATGTGCTT-GATCAAGGGGATGAGCCACATGGAACACATG 718
Query 938 TAGAACGGGCACTGATTGCTGAAGATGGGATCCAGCGTGGGAAAAAACTCTCCCGTGAGT 997
||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||
Sbjct 719 TAGAACGGGCACTGATTGCTGAAGATGGGATCCAGGGTGGGAAAAAATTCTCCCGTGAGT 778
Query 998 ATGAGAAAATCCCTGGTCCAACTTATGTGGATGCTAAGGAAGCGAAAATTGTAGCAAACA 1057
|||||||| ||||||||||||||||||||||||||||| ||||||||||| ||||||||
Sbjct 779 TTGAGAAAACCCCTGGTCCAACTTATGTGGATGCTAAGGCAGCGAAAATTGCAGCAAACA 838
Query 1058 CCAACGATAAACCTCATCCAAAATACTCTGACGTTAAGCCTGCTGGACATTTGGTGCAGC 1117
||||| |||||||||||||||| || |||||||||| |||||||||||||||||||||||
Sbjct 839 CCAACAATAAACCTCATCCAAATTATTCTGACGTTAGGCCTGCTGGACATTTGGTGCAGC 898
Query 1118 CAACTGCCCCTTCTGAAGTTGTGGAAAGACCTAAGCTGAACCTGCTTCCTCGGACAAAAC 1177
|||||||||||||||||||||||||| ||||||||||||||||||| ||||||| |||||
Sbjct 899 CAACTGCCCCTTCTGAAGTTGTGGAACGACCTAAGCTGAACCTGCTGCCTCGGAAAAAAC 958
Query 1178 CACTTGAAAGTGTGGAGAAACCTGTGAATGACGAAAAACTGGAAAATAGTGCTTCAGTCC 1237
| |||||||| |||||||||||||||||||| | ||||||||||||| || |||||||||
Sbjct 959 CTCTTGAAAGCGTGGAGAAACCTGTGAATGATGGAAAACTGGAAAATGGTTCTTCAGTCC 1018
Query 1238 TTATACAACGTGAAA------ATGCGACACAGAAAAGTTTCAACAATTCAAAATCTGGTT 1291
|||| |||||||||| ||||||||||||||||| | |||||||||||||||||||
Sbjct 1019 TTATTCAACGTGAAAGTGGTTATGCGACACAGAAAAGTGTGAACAATTCAAAATCTGGTT 1078
Query 1292 TGTCTACAGATGAGATTCCTAACCAGCCGGCTGAGCGGCCCAAGTTGAATCTGAAGCCTG 1351
||||| ||||| | || |||| ||||||||||| ||||||||||||||||||||||
Sbjct 1079 TGTCTGCAGAT--G----CTTACCAACCGGCTGAGCGCCCCAAGTTGAATCTGAAGCCTG 1132
Query 1352 TGGCACAGTTGCTTGAGCAGCCAGAAGTTAAAACTGAAAAGGACAGAAGTGCGGTTTTTG 1411
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 1133 TGGCACAGTTGCTTGAGCAGCCAGAAGTTAAAACTGAAAAGGAAAGAAGTGCGGTTTTTG 1192
Query 1412 GTGGTGCCAGACCACGAGAGCTGGTGTTGAAGGAGAGAGGCATTGATGAGCCCGAGCATC 1471
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 1193 GTGGTGCCAGACCACGAGAGCTGGTGTTGAAGGAGAGAGGCATTGATGAGACCGAGCATC 1252
Query 1472 ACAAATTGGATCAACCGACAGATAGGATGGTCCTCAAACCGATTGAAAGAGTTCCAGAGC 1531
||| |||||| ||||||| ||| |||||||||||||||||||||||||||| ||||||||
Sbjct 1253 ACATATTGGAGCAACCGATAGACAGGATGGTCCTCAAACCGATTGAAAGAGCTCCAGAGC 1312
Query 1532 ATGCAAGTCAAAGGCCAGTGAGTTCTCCACGTGACATGAGAACGAGGAAATTCGACCAAA 1591
|||||| ||||||||||||||||||||| |||||| ||||||||||||||||||||||||
Sbjct 1313 ATGCAATTCAAAGGCCAGTGAGTTCTCCCCGTGACTTGAGAACGAGGAAATTCGACCAAA 1372
Query 1592 AGGATGGGCGAAATGTAAGCGACATTGCCAGATCCGAAACTCAGAGGAGAAACTGGCGTG 1651
|||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1373 AGGACGGGCGAAATGTAAGCGACGTTGCCAGATCCGAAACTCAGAGGAGAAACTGGCGTG 1432
Query 1652 AAAATGAAAACAAGAGCGCAAGACAGCAACAGCAGACTCAGGAGAAGACAAGACATCCAT 1711
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 1433 AAAATGAAAACAAGAGCTCAAGACAGCAACAGCAGACTCAGGAGAAGACAAGACATCCAT 1492
Query 1712 CACCAGAGACATGGCGAAAGCCGGTTCCCCAGAAACTGGATTCACCAAATGGAACAGGGA 1771
|||| | |||||||||||| || ||||||||||||| ||| |||||| ||||||||||||
Sbjct 1493 CACCGGTGACATGGCGAAAACCAGTTCCCCAGAAACCGGAATCACCAGATGGAACAGGGA 1552
Query 1772 TTCGTCAC-GGAAAAGCAGCTTCTGCTCTTGAGCTAGCTCAAGCCTATTCTCCTTTCTCT 1830
|||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1553 TTCGTCACGGGAAAA-CAGCTTCTGCTCTTGAGCTAGCTCAAGCCTATTCTCCTTTCTCT 1611
Query 1831 GACCCTAAATCTGGAATTGGAAGCAGCAACAGTTTTAACAAAAGCCGCAACAACCAAACG 1890
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1612 GACCCTAAATCTGGAATTGGAAGCAGCAACAGTTTTAACAAAAGCCGCAACAACCAAACG 1671
Query 1891 CAGCAGCAACCCTTCTCTCGGTTGGTAGGATCGACAACAACAGGAAGACAGATTAATGGG 1950
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 1672 CAGCAGCAACCCTTCTCTCGGTTGGTAGGATCGACAACAACACCAAGACAGATTAATGGC 1731
Query 1951 TACTGA 1956
||||||
Sbjct 1732 TACTGA 1737
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 81703575525
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5