BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G11490.1
Length=1098
Score E
Sequences producing significant alignments: (Bits) Value
Ahg312181 jgi|Araly1|312181|fgenesh1_pm.C_scaffold_1000961 1498 0.0
> Ahg312181 jgi|Araly1|312181|fgenesh1_pm.C_scaffold_1000961
Length=1089
Score = 1498 bits (811), Expect = 0.0
Identities = 1009/1103 (91%), Gaps = 19/1103 (2%)
Strand=Plus/Plus
Query 1 ATGCGTGGGGTTTGGCTTTATCTCAAGAAGTCTCTTAGCTGCTGCAAG-GCACAGAAGTC 59
|||||||| |||||||||||||||||||||||||||||||||||| || |||||||||||
Sbjct 1 ATGCGTGGAGTTTGGCTTTATCTCAAGAAGTCTCTTAGCTGCTGC-AGTGCACAGAAGTC 59
Query 60 AACTGTAGCTTGTGATCCAGACAAGATCCAAATTCAGAAGAAGGAGAATCCATCTGGATG 119
|||||| |||||||||| |||||||| |||||||| || | |||||||||||||||
Sbjct 60 AACTGTCGCTTGTGATCGAGACAAGAACCAAATTC---AG-A--AGAATCCATCTGGATC 113
Query 120 CTCAAGAAGATCAATGTCGAATCTGAGAGATGTCTTTGTAACTAATGGAGATGAAGGAGC 179
||| |||||||||||| |||||||||||||| |||| |||||||| ||||||||||||
Sbjct 114 CTC---AAGATCAATGTCAAATCTGAGAGATGTTTTTGGAACTAATGAAGATGAAGGAGC 170
Query 180 TATGCAGAATGTAAGCTGCTGCAGCTCACGGTCTCTTGAGAGCTCCAGGTTTGTAAACAC 239
|||||||||| |||||||||||||||||||||||| ||||||||||||||| ||||||
Sbjct 171 TATGCAGAATCCAAGCTGCTGCAGCTCACGGTCTCTGGAGAGCTCCAGGTTTACAAACAC 230
Query 240 -AGTGAAATTTGAGGAGAATG-CAGGTTATTCAGACAGATTCAAAGGTTTGCTTAGCGGA 297
| |||| ||||||| ||||| || |||||||||||||||||||||||||| | ||||||
Sbjct 231 TA-TGAAGTTTGAGGGGAATGCCA-GTTATTCAGACAGATTCAAAGGTTTGATCAGCGGA 288
Query 298 GCATCTTCTTCTGATTTACTTCCCGGTCGTTGTTCAGAGAGATTTGATGTTGTTGGCTCT 357
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 289 GCATCTTCATCTGATTTACTTCCCGGTCGTTGTTCAGAGAGATTTGATGTTGTTGGCTCT 348
Query 358 GACATCTGCGGTTTCGGAGTTCTTGCTTGTCAAAAATGTCATGAGAGAGTCAGAGATCTT 417
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 349 GACATCTGCGGTTTCGGAGTTCTTGCTTGTCGAAAATGTCATGAGAGAGTCAGAGATCTT 408
Query 418 GACGCGTTTGAAGCACATTACCTCTCTAACCACTCTGTCGTTAGACTCTTAGCAGGAGAT 477
||||||||||| || ||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 409 GACGCGTTTGAGGCCCATTACCTCTCTAACCACTCTGTTATTAGACTCTTAGCAGGAGAT 468
Query 478 TTCTCAAGAACAACTGTGGAACTAATCTGCAACACAGGCTATTCTCACAAGCTAGGCAAA 537
||||||||||||||||| || |||||||||| ||||||| |||||||||||| ||||||
Sbjct 469 TTCTCAAGAACAACTGTTGAGTTAATCTGCAATACAGGCTTTTCTCACAAGCTTGGCAAA 528
Query 538 ATGAAAGGGAACAACATTTCAGCGATCTTTAAAATCCAGAACTT-GCAGAGAGTTGTTGC 596
| ||||||||||||||||| |||||||| ||||| || || || ||| |||||||||||
Sbjct 529 ACAAAAGGGAACAACATTTCGGCGATCTTGAAAATACA-AAGTTTGCAAAGAGTTGTTGC 587
Query 597 AGACTTTGAAGATTACAGAGAGCTCGTGAAAATAAGAGCAAACAAGCTTTCAAAGAAGCA 656
||| ||||||||||||||||| || |||||||||||||| ||||||||||||||||| ||
Sbjct 588 AGAGTTTGAAGATTACAGAGAACTTGTGAAAATAAGAGCGAACAAGCTTTCAAAGAAACA 647
Query 657 CTCTCGTTGTATGGCTGATGGCAACGAGTTTCTTGGGTTCCACGGTACAACTCTTTCTTG 716
|||||| |||||||||||||| |||||||||||||||||||||||||||| |||||||||
Sbjct 648 CTCTCGATGTATGGCTGATGGGAACGAGTTTCTTGGGTTCCACGGTACAAGTCTTTCTTG 707
Query 717 CACTCTCGGTTTCAGTAACAGCTCTTCAAACCTCTGTTTCTCGGATCACTGTGAAGTTTG 776
| |||||||||| || |||||||||||||||||||||||||| ||||| |||| ||||||
Sbjct 708 CGCTCTCGGTTTGAGAAACAGCTCTTCAAACCTCTGTTTCTCAGATCAATGTGGAGTTTG 767
Query 777 TCATATTCTAAGACATGGTTTCAGTCCTAAAACAAGACCAGATGGGATAAAAGGAGTTCT 836
|||||||||||||||||| ||||||||||||||||||||||||||||| ||||| |||||
Sbjct 768 TCATATTCTAAGACATGGATTCAGTCCTAAAACAAGACCAGATGGGATTAAAGGGGTTCT 827
Query 837 CACAGCATCAACTAGCTCTACAGCTCTTGAATCTATCGAAACCGATCAAGGAAGAAATAG 896
|||||||||| | |||||| |||||||| || ||||||||||||||||||||||||| ||
Sbjct 828 CACAGCATCATCAAGCTCTGCAGCTCTTAAAACTATCGAAACCGATCAAGGAAGAAACAG 887
Query 897 AGGTTCATTGATAGCTGTTGTGCTATGTAGAGTGATTGCAGGGAGGGTTCATAAACCTAT 956
||||||||||| ||||||||||||||||||||| |||||||| |||||||||||||||||
Sbjct 888 AGGTTCATTGAAAGCTGTTGTGCTATGTAGAGTTATTGCAGGTAGGGTTCATAAACCTAT 947
Query 957 GCAGACGTTTGAAAATTCTTTAGGGTTTTCTGAGTTTGATTCACTAGCTTTGAAAGTTGG 1016
||||| ||||||| || |||||||||||||||||||||||||| | ||||||||||| ||
Sbjct 948 GCAGAAGTTTGAAGATCCTTTAGGGTTTTCTGAGTTTGATTCATTGGCTTTGAAAGTGGG 1007
Query 1017 ACAAAATTCAAGAATTGAAGAGCTTTACCTGTTGAGTACA-AAAGCTTTGTTACCTTGCT 1075
|| |||||| ||||||||||||||||| || ||||||| | |||||||||||||||||||
Sbjct 1008 ACCAAATTCTAGAATTGAAGAGCTTTATCTATTGAGTA-ATAAAGCTTTGTTACCTTGCT 1066
Query 1076 TTGTGATAATCTTCAAGCCATGA 1098
|||| |||||||||||||| |||
Sbjct 1067 TTGTTATAATCTTCAAGCCTTGA 1089
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 40905889941
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5