BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G11500.1
Length=555
Score E
Sequences producing significant alignments: (Bits) Value
Ahg334443 jgi|Araly1|334443|fgenesh1_pg.C_scaffold_1001008 887 0.0
> Ahg334443 jgi|Araly1|334443|fgenesh1_pg.C_scaffold_1001008
Length=555
Score = 887 bits (480), Expect = 0.0
Identities = 531/556 (96%), Gaps = 2/556 (0%)
Strand=Plus/Plus
Query 1 ATGGAAAGTGAACTTGGGTTCTTGGTTTCTGTTGTGATCATATGTGCAGACATTACAGCT 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 ATGGAAAGTGAACTTGGGTTCTTGGTTTCTGTTGTGATCATATGTGCAGACATTACAGCT 60
Query 61 ACAGTCCTCGGGATCGAAGCCGAGATTGCTCAAAGCAAGGCACCTCATCATCATCATCAA 120
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 61 ACAGTCCTCGGGATCGAAGCAGAGATTGCTCAAAGCAAGGCACCTCATCATCATCATCAA 120
Query 121 CAACATTCAAGACATTCAGG-TTCTGGATGTCGAAGAAGCCCCAGCGATGGAGCATTTGC 179
|| |||| ||||||||| || ||||||||||||||||| |||||||| || ||| |||||
Sbjct 121 CAGCATTTAAGACATTC-GGATTCTGGATGTCGAAGAAACCCCAGCGCTGAAGCTTTTGC 179
Query 180 TGAGGGAGTAGCTGCAATGGTGCTTCTGTTTATTGTCCATGTCCTAGCTAATGTGCTTGG 239
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 180 TGAGGGAGTAGCTGCAATGGTGCTTCTGTTTATTGTCCATGTCCTAGCCAATGTGCTTGG 239
Query 240 AGGCTGCACTTACATTCGCTCTAAGCAAGATTTCAAAAGAGCAACGGCGAACAAGATACT 299
|||||||||||||||||||||||||||||||||||| |||||||| || |||||||||||
Sbjct 240 AGGCTGCACTTACATTCGCTCTAAGCAAGATTTCAACAGAGCAACTGCAAACAAGATACT 299
Query 300 CGCTGTGGCTTTCCTTGTTCTCTCCTGGATCTTTTTTGTTGTCAGCTACTCAACGCTAAT 359
|||| ||||||||||||||||||||||||||||||||| |||||||||||||||||| ||
Sbjct 300 CGCTATGGCTTTCCTTGTTCTCTCCTGGATCTTTTTTGGTGTCAGCTACTCAACGCTGAT 359
Query 360 GATAGGAACATTAGCCAACTCGAGAACGAATCGACTCTGCAGCTTGCCACATCGTTGGTT 419
|||||||||||| | |||||||||| |||||||| |||||||||||| ||||||||||||
Sbjct 360 GATAGGAACATTGGGCAACTCGAGATCGAATCGATTCTGCAGCTTGCAACATCGTTGGTT 419
Query 420 TTTTCTTATTGGAGGCATATTTTGTCTAGGACATGGAGTGGTGACTTCAGCATATTATGT 479
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 420 TTTTCTTATTGGAGGCATATTTTGTCTAGGACATGGAGTGGTGACTTCAGCATATTATGT 479
Query 480 TTCAGCAATTGCTGCTAAAAAAGAAGACAAAGAGAATGCGCAACAAGAAAATCTAGCAAA 539
||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||
Sbjct 480 TTCAGCAATTGCTGCTAAAAAAGAAGACAAAGAGAATGCGCAACAAGAAAATCGATCAAA 539
Query 540 TAGAAGCCGCGCATAA 555
|||||||| ||||||
Sbjct 540 CAGAAGCCGTGCATAA 555
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 20260617759
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5