BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT1G11500.1 Length=555 Score E Sequences producing significant alignments: (Bits) Value Ahg334443 jgi|Araly1|334443|fgenesh1_pg.C_scaffold_1001008 887 0.0 > Ahg334443 jgi|Araly1|334443|fgenesh1_pg.C_scaffold_1001008 Length=555 Score = 887 bits (480), Expect = 0.0 Identities = 531/556 (96%), Gaps = 2/556 (0%) Strand=Plus/Plus Query 1 ATGGAAAGTGAACTTGGGTTCTTGGTTTCTGTTGTGATCATATGTGCAGACATTACAGCT 60 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1 ATGGAAAGTGAACTTGGGTTCTTGGTTTCTGTTGTGATCATATGTGCAGACATTACAGCT 60 Query 61 ACAGTCCTCGGGATCGAAGCCGAGATTGCTCAAAGCAAGGCACCTCATCATCATCATCAA 120 |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| Sbjct 61 ACAGTCCTCGGGATCGAAGCAGAGATTGCTCAAAGCAAGGCACCTCATCATCATCATCAA 120 Query 121 CAACATTCAAGACATTCAGG-TTCTGGATGTCGAAGAAGCCCCAGCGATGGAGCATTTGC 179 || |||| ||||||||| || ||||||||||||||||| |||||||| || ||| ||||| Sbjct 121 CAGCATTTAAGACATTC-GGATTCTGGATGTCGAAGAAACCCCAGCGCTGAAGCTTTTGC 179 Query 180 TGAGGGAGTAGCTGCAATGGTGCTTCTGTTTATTGTCCATGTCCTAGCTAATGTGCTTGG 239 |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| Sbjct 180 TGAGGGAGTAGCTGCAATGGTGCTTCTGTTTATTGTCCATGTCCTAGCCAATGTGCTTGG 239 Query 240 AGGCTGCACTTACATTCGCTCTAAGCAAGATTTCAAAAGAGCAACGGCGAACAAGATACT 299 |||||||||||||||||||||||||||||||||||| |||||||| || ||||||||||| Sbjct 240 AGGCTGCACTTACATTCGCTCTAAGCAAGATTTCAACAGAGCAACTGCAAACAAGATACT 299 Query 300 CGCTGTGGCTTTCCTTGTTCTCTCCTGGATCTTTTTTGTTGTCAGCTACTCAACGCTAAT 359 |||| ||||||||||||||||||||||||||||||||| |||||||||||||||||| || Sbjct 300 CGCTATGGCTTTCCTTGTTCTCTCCTGGATCTTTTTTGGTGTCAGCTACTCAACGCTGAT 359 Query 360 GATAGGAACATTAGCCAACTCGAGAACGAATCGACTCTGCAGCTTGCCACATCGTTGGTT 419 |||||||||||| | |||||||||| |||||||| |||||||||||| |||||||||||| Sbjct 360 GATAGGAACATTGGGCAACTCGAGATCGAATCGATTCTGCAGCTTGCAACATCGTTGGTT 419 Query 420 TTTTCTTATTGGAGGCATATTTTGTCTAGGACATGGAGTGGTGACTTCAGCATATTATGT 479 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 420 TTTTCTTATTGGAGGCATATTTTGTCTAGGACATGGAGTGGTGACTTCAGCATATTATGT 479 Query 480 TTCAGCAATTGCTGCTAAAAAAGAAGACAAAGAGAATGCGCAACAAGAAAATCTAGCAAA 539 ||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||| Sbjct 480 TTCAGCAATTGCTGCTAAAAAAGAAGACAAAGAGAATGCGCAACAAGAAAATCGATCAAA 539 Query 540 TAGAAGCCGCGCATAA 555 |||||||| |||||| Sbjct 540 CAGAAGCCGTGCATAA 555 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 20260617759 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5