BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G11510.1
Length=1059
Score E
Sequences producing significant alignments: (Bits) Value
Ahg919969 jgi|Araly1|919969|scaffold_101250.1 394 7e-109
Ahg931964 jgi|Araly1|931964|scaffold_304421.1 340 9e-93
> Ahg919969 jgi|Araly1|919969|scaffold_101250.1
Length=553
Score = 394 bits (213), Expect = 7e-109
Identities = 447/552 (81%), Gaps = 47/552 (9%)
Strand=Plus/Plus
Query 536 TTGATGTTAGTAAGAATCAGCTTATGGAAAAGCTTAGG-GCTTTAAAGAAGAAGTATGAG 594
||||||||||||||| |||| ||||||||||||||||| | |||||||||||||||||||
Sbjct 1 TTGATGTTAGTAAGATTCAGTTTATGGAAAAGCTTAGGAG-TTTAAAGAAGAAGTATGAG 59
Query 595 AACAATCTTGGTAAAGCCAAGGATGGTGTTGAACCTACTTTCGTCAAACCTCATGATCGC 654
|||||||||||||||||||||||||||| ||||||||| ||||| |||||||||||||||
Sbjct 60 AACAATCTTGGTAAAGCCAAGGATGGTGATGAACCTACATTCGTTAAACCTCATGATCGC 119
Query 655 AAGGCTTTTGAATTGTCTAAGTTAGTTTGGGGAGGTATTAGAATGGCTCTTGCA-TCTGG 713
|||||||||||||||||||||||||||||||||||||||||||||| |||| || || ||
Sbjct 120 AAGGCTTTTGAATTGTCTAAGTTAGTTTGGGGAGGTATTAGAATGGTTCTT-CAATCGGG 178
Query 714 TATGAAATCTAATGAGAAGTCGAAGAAGAGTAGTAAGT---------TTGAGTCTGTGAA 764
|||||||||||||| ||||||||||||||| ||||||| |||||||||||||
Sbjct 179 TATGAAATCTAATGGGAAGTCGAAGAAGAGCAGTAAGTCGAAGAAAGTTGAGTCTGTGAA 238
Query 765 GCATGA-ACTTGATTCTT----CT-T-TGCCCAACA--GTAAAAACAACTGTGAAGATGA 815
|||||| | |||||| | | | || | || | | | || || || || ||
Sbjct 239 GCATGAGA-TTGATTGTGAAGACGATGTGACTAATAAAGGAGAAGCATCTTTGCT--TG- 294
Query 816 GGTGAT--GGATGAA-GGAGAAGTCTCTTTTACAAAGTCTTCTCTTGTTAGATCGATAGT 872
| || | ||| || ||| | | || | | | | |||||||||||||||||||||||
Sbjct 295 G-TGCTTTGGA--AATGGATACG-CT-TGTGA-A--GTCTTCTCTTGTTAGATCGATAGC 346
Query 873 GGGTCTTGG-CATGGATGAACTTACTGCTCAACAAGGATTGAGTAAGCTTGCCTCAAAGG 931
| || |||| | ||||| ||||| ||||||||||||||||||| |||| |||| |||
Sbjct 347 GCGTTTTGGTC-TGGATCAACTTGTTGCTCAACAAGGATTGAGTTTGCTTTCCTCGGAGG 405
Query 932 ATATGAAGAGATTTTACGAGCAGTGGAAAGCGATGCAGGCT-AGGGAATTTGAGTTCTTT 990
||| ||||||||| | | ||||||||||||| ||||| | |||||||| ||||| |||
Sbjct 406 ATAAGAAGAGATTCGAGGTGCAGTGGAAAGCGTTGCAGT-TGAGGGAATTCGAGTT-TTT 463
Query 991 TT-GCAGAAGCA-TGGTTTTCTTTTTGAAGTGCTATCAAAGAT-ATCTGAAGCATTTGGA 1047
| ||||||| | | |||||||| | ||||| || |||||| | |||||| || ||
Sbjct 464 ATCGCAGAAG-AGTTGTTTTCTTCATAAAGTGGTAAAAAAGATGA-CTGAAGTATCCCGA 521
Query 1048 TCAAACGCTTAG 1059
||||||||||||
Sbjct 522 TCAAACGCTTAG 533
> Ahg931964 jgi|Araly1|931964|scaffold_304421.1
Length=523
Score = 340 bits (184), Expect = 9e-93
Identities = 413/518 (80%), Gaps = 38/518 (7%)
Strand=Plus/Plus
Query 552 TCAGCTT-ATGGAAAAGCTTAGGGCTTTAAAGAAGAAGTATGAGAACAATCTTGGTAAAG 610
|||| || |||||||| |||||| ||||| ||||||||||||||||||||||| |||||
Sbjct 14 TCAG-TTCATGGAAAAACTTAGGAATTTAAGGAAGAAGTATGAGAACAATCTTGTTAAAG 72
Query 611 CCAAGGA-TGGTGTTGAACCTAC-TTTCGTCAAACCTCATGATCGCAAGGCTTTTGAATT 668
|||| || ||||| ||||||||| ||| || ||| |||||||||||||||||||||||||
Sbjct 73 CCAA-GAGTGGTGATGAACCTACGTTT-GTAAAAACTCATGATCGCAAGGCTTTTGAATT 130
Query 669 GTCTAAGTTAGTTTGGGGAGGTATTAGAATG-GCTCTTGCA-TCTGGTATGAAATCTAAT 726
||||||||| |||||||||| |||| |||| ||| | | | ||| || ||| || ||
Sbjct 131 GTCTAAGTTTGTTTGGGGAGCTATT-GAATCAGCTGT-GAAATCTAGTGGGAAGTCGAA- 187
Query 727 GA-GAAGTCG-AAGAAGAGTAGTAAGTTTGAGTCTGTGAAGCATGAACTTGATTCTTCTT 784
|| || || | ||| || || ||||| ||||||||||| ||||| |||||||||||||
Sbjct 188 GAAGA-GTAGTAAGTCGA--AGAAAGTT-GAGTCTGTGAACCATGAGCTTGATTCTTCTT 243
Query 785 TGCCCAACAGTAAAAACAACTGTGAAGATGAGGTGATGGATGAAGGAGAAGTCTCTTTTA 844
||||||| ||||||||| | | | | | || || || | | | || ||
Sbjct 244 TGCCCAATAGTAAAAACGA--G-GCTGCCGCGG--ATC--TG--G-ATACGTTTCC---- 289
Query 845 CAAAGTCTTCTCTTGTTAGATCGATAGTGGGTCTTGGCATGGATGAACTTACTGCTCAAC 904
||| |||||||||||| |||| | ||||| || |||| | |||||| || |||||||||
Sbjct 290 CAA-GTCTTCTCTTGTAAGATGGCTAGTGAGTTTTGGTTTTGATGAATTTTCTGCTCAAC 348
Query 905 AAGGATTGAGTAAGC-TTGCCTCAAAGGATATGAAGAGATTTTACGAGCAGTGGAAAGCG 963
||||||||||| || |||||||| |||||| ||||||||| | ||| ||||||||||
Sbjct 349 AAGGATTGAGTT-GCCTTGCCTCAGAGGATAAGAAGAGATTCGAGGAGAAGTGGAAAGC- 406
Query 964 AT-GCAGGCTAGGGAATTTGAGTTCTTTTTGCAGAAGCAT-GGTTTTCTTTTTGAAGTGC 1021
|| ||||| ||||||||| ||||||| || ||||||| | ||||||||| |||||||
Sbjct 407 ATTGCAGGTTAGGGAATTCGAGTTCTATTCGCAGAAG-AGCGGTTTTCTTCATGAAGTGG 465
Query 1022 TATCAAAGATATCTGAAGCATTTGGATCAAACGCTTAG 1059
|| ||||||| ||||||||||| |||||| ||||||
Sbjct 466 TAGCAAAGATGGCTGAAGCATTTCCATCAAATGCTTAG 503
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 39419096178
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5