BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT1G11540.1 Length=1320 Score E Sequences producing significant alignments: (Bits) Value Ahg334446 jgi|Araly1|334446|fgenesh1_pg.C_scaffold_1001011 1027 0.0 > Ahg334446 jgi|Araly1|334446|fgenesh1_pg.C_scaffold_1001011 Length=1038 Score = 1027 bits (556), Expect = 0.0 Identities = 749/840 (89%), Gaps = 21/840 (3%) Strand=Plus/Plus Query 4 TTGCAGACCAGAGTCAAATCCGCAGCACAACAAGCCAATGGCTCCATTTCTCGGAGGACC 63 |||||||||| | |||||||| || | ||||||||||||||||||||||| || | | Sbjct 62 TTGCAGACCAAAATCAAATCCTCAACGCAACAAGCCAATGGCTCCATTTCCCGCCGAATT 121 Query 64 TCAGCCAATCAACTATTGAAGTCTCCATCCCCACCATAATCGCCGCCGTTCTCTCGTTCT 123 | | | | |||||||| || ||||||| || || |||||||||||||||||||| |||| Sbjct 122 TGAACGAGTCAACTATCAAATTCTCCATTCCAACGATAATCGCCGCCGTTCTCTCATTCT 181 Query 124 TCGCCGCCTCTATCTCCAGCGCCGGAGGAATCGGCGGCGGTGGACTCTTCCTCTCGATAA 183 |||||||||| |||||||||||| || | ||||||| |||||||||||| |||| Sbjct 182 TCGCCGCCTCAATCTCCAGCGCC---GG-A-----GGCGGTGCACTCTTCCTCTCAATAA 232 Query 184 TGACAATC-ATCGCCGGTCTCGAAATGAAAACAGCTTCAAGCTTCTCAGCGTTCATGGTA 242 |||| | | ||| ||||||||||||||||||||||||| |||||||||||||||||| || Sbjct 233 TGACGA-CAATCTCCGGTCTCGAAATGAAAACAGCTTCGAGCTTCTCAGCGTTCATGATA 291 Query 243 ACCGGCGTCTCTTTCGCTAACGTGGGATGCAATCTTTTC-CTGAGAAACCCTAAATCAAG 301 ||||| ||||| | || ||||||||||||||||||||| | ||||||||||||||||| Sbjct 292 ACCGGAGTCTCCATAGCAAACGTGGGATGCAATCTTTTCGC-CAGAAACCCTAAATCAAG 350 Query 302 AGACAAAACCCTAATCGACTTCGATTTAGCTCTTACTATTCAGCCATGTCTACTTCTCGG 361 ||||||||| ||||||| ||||||||| |||| ||| ||||||||||||||||||| || Sbjct 351 AGACAAAACATTAATCGATTTCGATTTATCTCTCACTCTTCAGCCATGTCTACTTCTTGG 410 Query 362 AGTAAGTATTGGTGTGATCTGTAACCGTATGTTCCCAAATTGGCTTGTGTTGTTTCTCTT 421 ||| |||||||||||||| |||||||||||||||||||||||||||||||||| ||||| Sbjct 411 AGTTAGTATTGGTGTGATATGTAACCGTATGTTCCCAAATTGGCTTGTGTTGTCACTCTT 470 Query 422 CGCTGTGTTCCTCGCCTGGTCAACGATGAAGACTTGTAAAAAGGGAGTTTCTTACTGGAA 481 ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| Sbjct 471 CGCTGTGTTCCTCGCCTGGTCAACGATGAAGACATGTAAAAAGGGAGTTTCTTACTGGAA 530 Query 482 TTTGGAGTCGGAAAGAGCGAAGATTAAGAGTCCAAGAGACGTTGAT-GGCATCGAGGTAG 540 ||||||||||||||||| |||||||| ||||| |||||| | |||| || ||| |||||| Sbjct 531 TTTGGAGTCGGAAAGAGAGAAGATTAGGAGTCGAAGAGATGATGATAGG-ATCAAGGTAG 589 Query 541 CGAGATCGCCGCTTCTGAG-TGAA-GAAAGAGAAGATGTGAG-ACAGAGAGGGATGATTA 597 ||||||||||||||||| | | || ||| |||||| || || | ||||||| ||||||| Sbjct 590 CGAGATCGCCGCTTCTG-GCT-AATGAAGGAGAAGCTG-AAGTAGAGAGAGGAATGATTA 646 Query 598 GGTTTCCATGGATGAAGCTTGGAGTTTTAGTGATCATTTGGTTATTGTTCTTCTCTATTA 657 |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| Sbjct 647 GGTTTCCATGGATGAAGCTTGGAGTTTTAGTGATCATTTGGTTAGTGTTCTTCTCTATTA 706 Query 658 ATCTTTTCCGCGGAAACAAATACGGTCAGGGAATCATATCGATCAAGCCATGTGGAGCTC 717 ||||||| || |||||||||||||||||||||||||||||||||||||||||||||| || Sbjct 707 ATCTTTTTCGTGGAAACAAATACGGTCAGGGAATCATATCGATCAAGCCATGTGGAGGTC 766 Query 718 TCTACTGGTTCCTCTCCTCGCTTCAAATACCTCTCACTATCTTCTTTACTCTCTGCATTT 777 |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| Sbjct 767 TCTACTGGTTCCTCTCGTCGCTTCAAATACCTCTCACTATCTTCTTTACTCTCTGCATTT 826 Query 778 ACTTCAGTGACAATGTTCAAAGCAACCACACATCGCATAGTAACCAAAACTCTGAACAGG 837 |||| |||||||||||||||||||||||| || |||||||||||| |||||||| ||| Sbjct 827 GTTTCAATGACAATGTTCAAAGCAACCACACTTCACATAGTAACCAAGACTCTGAAAAGG 886 Score = 267 bits (144), Expect = 2e-70 Identities = 152/156 (97%), Gaps = 0/156 (0%) Strand=Plus/Plus Query 1131 AAGGTTATAGCCAAGTATGGGAGGGCTTCGATCATTGTGTTTGCAGTTGGTATCGTCATG 1190 |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| Sbjct 883 AAGGTTATAGCCAAGTATGGGAGGGCTTCGATCATTGTGTTTGCCGTTGGTATCGTCATG 942 Query 1191 GCACTTAGCACTGTACTGATGACAACCCATGGAGCTTTTAATGTTTGGAATGATTTTGTC 1250 ||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||| Sbjct 943 GCACTTAGCACTGTACTGATGACGACCCATGGAGCTCTTAATGTTTGGAATGATTTTGTC 1002 Query 1251 TCTGGTCGCTACATGGGTTTCAAATTACCCTGTTAA 1286 |||||| ||||||||||||||||||||||||||||| Sbjct 1003 TCTGGTGGCTACATGGGTTTCAAATTACCCTGTTAA 1038 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 49369177515 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5