BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G11540.1
Length=1320
Score E
Sequences producing significant alignments: (Bits) Value
Ahg334446 jgi|Araly1|334446|fgenesh1_pg.C_scaffold_1001011 1027 0.0
> Ahg334446 jgi|Araly1|334446|fgenesh1_pg.C_scaffold_1001011
Length=1038
Score = 1027 bits (556), Expect = 0.0
Identities = 749/840 (89%), Gaps = 21/840 (3%)
Strand=Plus/Plus
Query 4 TTGCAGACCAGAGTCAAATCCGCAGCACAACAAGCCAATGGCTCCATTTCTCGGAGGACC 63
|||||||||| | |||||||| || | ||||||||||||||||||||||| || | |
Sbjct 62 TTGCAGACCAAAATCAAATCCTCAACGCAACAAGCCAATGGCTCCATTTCCCGCCGAATT 121
Query 64 TCAGCCAATCAACTATTGAAGTCTCCATCCCCACCATAATCGCCGCCGTTCTCTCGTTCT 123
| | | | |||||||| || ||||||| || || |||||||||||||||||||| ||||
Sbjct 122 TGAACGAGTCAACTATCAAATTCTCCATTCCAACGATAATCGCCGCCGTTCTCTCATTCT 181
Query 124 TCGCCGCCTCTATCTCCAGCGCCGGAGGAATCGGCGGCGGTGGACTCTTCCTCTCGATAA 183
|||||||||| |||||||||||| || | ||||||| |||||||||||| ||||
Sbjct 182 TCGCCGCCTCAATCTCCAGCGCC---GG-A-----GGCGGTGCACTCTTCCTCTCAATAA 232
Query 184 TGACAATC-ATCGCCGGTCTCGAAATGAAAACAGCTTCAAGCTTCTCAGCGTTCATGGTA 242
|||| | | ||| ||||||||||||||||||||||||| |||||||||||||||||| ||
Sbjct 233 TGACGA-CAATCTCCGGTCTCGAAATGAAAACAGCTTCGAGCTTCTCAGCGTTCATGATA 291
Query 243 ACCGGCGTCTCTTTCGCTAACGTGGGATGCAATCTTTTC-CTGAGAAACCCTAAATCAAG 301
||||| ||||| | || ||||||||||||||||||||| | |||||||||||||||||
Sbjct 292 ACCGGAGTCTCCATAGCAAACGTGGGATGCAATCTTTTCGC-CAGAAACCCTAAATCAAG 350
Query 302 AGACAAAACCCTAATCGACTTCGATTTAGCTCTTACTATTCAGCCATGTCTACTTCTCGG 361
||||||||| ||||||| ||||||||| |||| ||| ||||||||||||||||||| ||
Sbjct 351 AGACAAAACATTAATCGATTTCGATTTATCTCTCACTCTTCAGCCATGTCTACTTCTTGG 410
Query 362 AGTAAGTATTGGTGTGATCTGTAACCGTATGTTCCCAAATTGGCTTGTGTTGTTTCTCTT 421
||| |||||||||||||| |||||||||||||||||||||||||||||||||| |||||
Sbjct 411 AGTTAGTATTGGTGTGATATGTAACCGTATGTTCCCAAATTGGCTTGTGTTGTCACTCTT 470
Query 422 CGCTGTGTTCCTCGCCTGGTCAACGATGAAGACTTGTAAAAAGGGAGTTTCTTACTGGAA 481
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 471 CGCTGTGTTCCTCGCCTGGTCAACGATGAAGACATGTAAAAAGGGAGTTTCTTACTGGAA 530
Query 482 TTTGGAGTCGGAAAGAGCGAAGATTAAGAGTCCAAGAGACGTTGAT-GGCATCGAGGTAG 540
||||||||||||||||| |||||||| ||||| |||||| | |||| || ||| ||||||
Sbjct 531 TTTGGAGTCGGAAAGAGAGAAGATTAGGAGTCGAAGAGATGATGATAGG-ATCAAGGTAG 589
Query 541 CGAGATCGCCGCTTCTGAG-TGAA-GAAAGAGAAGATGTGAG-ACAGAGAGGGATGATTA 597
||||||||||||||||| | | || ||| |||||| || || | ||||||| |||||||
Sbjct 590 CGAGATCGCCGCTTCTG-GCT-AATGAAGGAGAAGCTG-AAGTAGAGAGAGGAATGATTA 646
Query 598 GGTTTCCATGGATGAAGCTTGGAGTTTTAGTGATCATTTGGTTATTGTTCTTCTCTATTA 657
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 647 GGTTTCCATGGATGAAGCTTGGAGTTTTAGTGATCATTTGGTTAGTGTTCTTCTCTATTA 706
Query 658 ATCTTTTCCGCGGAAACAAATACGGTCAGGGAATCATATCGATCAAGCCATGTGGAGCTC 717
||||||| || |||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 707 ATCTTTTTCGTGGAAACAAATACGGTCAGGGAATCATATCGATCAAGCCATGTGGAGGTC 766
Query 718 TCTACTGGTTCCTCTCCTCGCTTCAAATACCTCTCACTATCTTCTTTACTCTCTGCATTT 777
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 767 TCTACTGGTTCCTCTCGTCGCTTCAAATACCTCTCACTATCTTCTTTACTCTCTGCATTT 826
Query 778 ACTTCAGTGACAATGTTCAAAGCAACCACACATCGCATAGTAACCAAAACTCTGAACAGG 837
|||| |||||||||||||||||||||||| || |||||||||||| |||||||| |||
Sbjct 827 GTTTCAATGACAATGTTCAAAGCAACCACACTTCACATAGTAACCAAGACTCTGAAAAGG 886
Score = 267 bits (144), Expect = 2e-70
Identities = 152/156 (97%), Gaps = 0/156 (0%)
Strand=Plus/Plus
Query 1131 AAGGTTATAGCCAAGTATGGGAGGGCTTCGATCATTGTGTTTGCAGTTGGTATCGTCATG 1190
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 883 AAGGTTATAGCCAAGTATGGGAGGGCTTCGATCATTGTGTTTGCCGTTGGTATCGTCATG 942
Query 1191 GCACTTAGCACTGTACTGATGACAACCCATGGAGCTTTTAATGTTTGGAATGATTTTGTC 1250
||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||
Sbjct 943 GCACTTAGCACTGTACTGATGACGACCCATGGAGCTCTTAATGTTTGGAATGATTTTGTC 1002
Query 1251 TCTGGTCGCTACATGGGTTTCAAATTACCCTGTTAA 1286
|||||| |||||||||||||||||||||||||||||
Sbjct 1003 TCTGGTGGCTACATGGGTTTCAAATTACCCTGTTAA 1038
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 49369177515
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5