BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G11545.1
Length=1132
Score E
Sequences producing significant alignments: (Bits) Value
Ahg471290 jgi|Araly1|471290|fgenesh2_kg.1__1244__AT1G11545.1 1718 0.0
> Ahg471290 jgi|Araly1|471290|fgenesh2_kg.1__1244__AT1G11545.1
Length=1130
Score = 1718 bits (930), Expect = 0.0
Identities = 1075/1142 (94%), Gaps = 22/1142 (2%)
Strand=Plus/Plus
Query 1 CACTCACGGAACAAGTGTAGATTGCATTACctctctctctctctctctTCGAAATATTCG 60
||||||||||||||| ||| ||||||||| |||||||||||||||||||||||
Sbjct 1 CACTCACGGAACAAGCGTAAATTGCATTA--------TCTCTCTCTCTTCGAAATATTCG 52
Query 61 AAGTAGAGACAACCAATGGAGACGGAAAGGAGGATCATAACGAGCTGTTCTGCCATGACG 120
||| |||||||||||||||||||| ||||||| || || || ||||||||| ||||| |
Sbjct 53 AAGCAGAGACAACCAATGGAGACGCAAAGGAGAATAATCACAAGCTGTTCTTCCATGGCC 112
Query 121 GCTCTGTTCTTGTTCATGACGGCTCTAATGGCGTC--G-TCCTCTATCGCAGCAACACCG 177
||||| ||| ||||||||||||||||||| ||||| | || |||||| |||||||||||
Sbjct 113 GCTCTTTTCGTGTTCATGACGGCTCTAATAGCGTCTTGTTCTTCTATCACAGCAACACCG 172
Query 178 ACACAATCGTTTGAAGATAATTTCAACATTATGTGGTCTGAAAATCACTTCACGACTTCC 237
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 173 ACACAATCCTTTGAAGATAATTTCAACATTATGTGGTCTGAAAATCACTTCACGACTTCC 232
Query 238 GATGATGGAGAGATCTGGAATCTTTCCTTAGATAACGACACCGGATGTGGATTTCAGACA 297
|| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 233 GAGGATGGAGAGATCTGGAATCTTTCCTTAGACAACGACACCGGATGTGGATTTCAGACA 292
Query 298 AAGCACATGTATAGATTCGGATGGTTTAGTATGAAGCTAAAGCTCGTCGGAGGCGACTCC 357
|||||||||||||||||||||||||| ||||||||||| |||||||| || |||||||||
Sbjct 293 AAGCACATGTATAGATTCGGATGGTTCAGTATGAAGCTTAAGCTCGTAGGCGGCGACTCC 352
Query 358 GCCGGCGTCGTCACCGCTTACTACATGTGTTCGGAGAATGGGGCAGGACCGGAGAGAGAC 417
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 353 GCCGGCGTCGTCACCGCTTACTACATGTGTTCAGAGAATGGGGCAGGACCGGAGAGAGAC 412
Query 418 GAGATAGATTTCGAATTTCTAGGGAACCGAACCGGACAGCCTTACATTATTCAGACCAAT 477
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 413 GAGATAGATTTCGAATTTCTAGGGAACCGAACCGGACAGCCTTACATTATTCAGACCAAT 472
Query 478 GTGTATAAGAACGGAACCGGGAATCGGGAGATGCGACATTCCCTCTGGTTCGACCCGACC 537
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 473 GTGTATAAGAACGGAACCGGGAATCGGGAGATGCGACATTCCCTCTGGTTCGACCCGACC 532
Query 538 AAGGATTATCACACCTACTCAATTCTTTGGAATAACCACCAGCTTGTGTTCTTCGTGGAT 597
|||||||| ||||||||||||||||||||||||||||||||||| || ||||||||||||
Sbjct 533 AAGGATTACCACACCTACTCAATTCTTTGGAATAACCACCAGCTCGTCTTCTTCGTGGAT 592
Query 598 AGGGTACCAATTCGAGTATACAAGAACAGTGATAAGGTACCAAACAACGACTTCTTCCCG 657
|| ||||| |||||||| |||||||||||||||||||||||||||||||| ||||||||
Sbjct 593 AGAGTACCGATTCGAGTGTACAAGAACAGTGATAAGGTACCAAACAACGATTTCTTCCCA 652
Query 658 AACCAGAAGCCGATGTACTTGTTCTCCAGCATTTGGAACGCTGACGATTGGGCTACACGT 717
|||||||||||||||||||||||||| ||||||||||||||||| |||||||| ||||||
Sbjct 653 AACCAGAAGCCGATGTACTTGTTCTCTAGCATTTGGAACGCTGATGATTGGGCGACACGT 712
Query 718 GGTGGTCTGGAGAAGACTGACTGGAAAAAAGCTCCATTCGTCTCTTCTTACAAGGACTTC 777
|| ||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 713 GGCGGTCTCGAGAAGACTGACTGGAAAAAAGCTCCGTTCGTCTCTTCTTACAAGGACTTC 772
Query 778 GCCGTCGAAGGCTGCCGTTGGAAGGATCCATTCCCTGCATGCGTCTCTACCACAACAGAG 837
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 773 GCCGTCGAAGGCTGCCGTTGGAAGGATCCATTCCCTGCATGCGTCTCCACCACAACAGAT 832
Query 838 AATTGGTGGGATCAGTACGACGCGTGGCATTTGTCCAAGACACAGAAGATGGATTATGCG 897
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 833 AATTGGTGGGATCAGTACGACGCATGGCATTTGTCCAAGACACAGAAGATGGATTATGCG 892
Query 898 TGGGTGCAGCGTAATCTCGTCGTATACGATTATTGCAAAGACAGTGAGAGGTTCCCTACT 957
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 893 TGGGTGCAGCGTAATCTCGTCGTATACGATTATTGCAAAGACAGTGAGAGGTTCCCTACT 952
Query 958 CTTCCTTGGGAGTGTTCCATTAGCCCTTGGGCTTAAAATCAATTTTGTTTT--GAGTGTA 1015
||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 953 CTTCCTTGGGAGTGTTCCATTAGCCCTTGGGCTTAAAATCAATTTTGTTTTTTGAGTGTA 1012
Query 1016 TTAA---AGTGGAAATGGTTTATGTAATAATTTTACTCTCttttttttggcatttcttat 1072
|||| ||||||||||||| ||||||||||||||| || ||||||| | |||||||||
Sbjct 1013 TTAATTCAGTGGAAATGGTTAATGTAATAATTTTAC-CT-TTTTTTT-GT-ATTTCTTAT 1068
Query 1073 tttgttatggactatat--cctctgtttatttatttaattaattatttatttaGTCGGCT 1130
||||||||||| ||||| |||||||||||||||||||||||||||||||| ||||||||
Sbjct 1069 TTTGTTATGGATTATATATCCTCTGTTTATTTATTTAATTAATTATTTATTCAGTCGGCT 1128
Query 1131 AT 1132
||
Sbjct 1129 AT 1130
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 42202069119
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5