BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G11560.1
Length=1032
Score E
Sequences producing significant alignments: (Bits) Value
Ahg334448 jgi|Araly1|334448|fgenesh1_pg.C_scaffold_1001013 1456 0.0
Ahg924835 jgi|Araly1|924835|scaffold_200396.1 436 1e-121
> Ahg334448 jgi|Araly1|334448|fgenesh1_pg.C_scaffold_1001013
Length=1410
Score = 1456 bits (788), Expect = 0.0
Identities = 946/1022 (93%), Gaps = 12/1022 (1%)
Strand=Plus/Plus
Query 1 ATGGTGATTCAAACGAATCTCTCATATCGTTTCTTCATCTTAATTGTGTTTTTATTTACC 60
||||||||||| || |||||||||||||||| |||| ||||||| | |||||||||||||
Sbjct 1 ATGGTGATTCATACTAATCTCTCATATCGTTCCTTCCTCTTAATCGCGTTTTTATTTACC 60
Query 61 CTAGCGAATCCAAAATCAGATTCAGATCTCAAAAACGAACTAGTCTCCCTCCGATCAACC 120
|||||||||||| |||| ||||||||||||| |||||| || || || ||||||||| ||
Sbjct 61 CTAGCGAATCCAGAATCGGATTCAGATCTCATAAACGAGCTTGTTTCGCTCCGATCAGCC 120
Query 121 GCCGAATCAGGCGTGA-TCTCCTTCAACAACGACGACGTTTCCAAATTCATAACCTCCGT 179
||||||||||| ||| || || ||||| |||| ||||||||||||||||||||||||||
Sbjct 121 GCCGAATCAGGTTTGATTC-CCCTCAACGACGAAGACGTTTCCAAATTCATAACCTCCGT 179
Query 180 ATCCACTCCTAGACCTTACTCACTCATCATCTTCTTCGACGCCGTTCATCTCCACGGCAA 239
| ||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||
Sbjct 180 AGCCACTCCTAGACCTTACTCTCTCATCATCTTCTTCGACGCAATTCATCTCCACGGCAA 239
Query 240 TAGCCAGCTACGTCTTCCAGAGTTCCGCCGCGAATTCAGACTCGTCTCCGCCACTTTCAT 299
||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 240 TAGCCAGCTCCGTCTTCCAGAGTTCCGCCGCGAATTCGGACTCGTCTCCGCCACTTTCAT 299
Query 300 CACCAACAACAACAAT-GAATCTAACGGCACAAAGCTCTTCTTCTGCGAGATCGAATCAA 358
| |||||||||||||| ||| ||||||| | |||||||||||||||||||||||||||||
Sbjct 300 CGCCAACAACAACAATGGAA-CTAACGGAAAAAAGCTCTTCTTCTGCGAGATCGAATCAA 358
Query 359 CTCACTCCGAGGCTTCTTTCC-GCCGCTTCGCCGTCGAGTCA-CTACCACACATTTCCCT 416
||||||| | |||||| |||| | ||||||||||||||| | ||||| |||||||||||
Sbjct 359 CTCACTCTGTGGCTTCGTTCCAG-CGCTTCGCCGTCGAG-AATCTACCGCACATTTCCCT 416
Query 417 CGTTAGCCCCACGACAGAGAATTTAACAGAATCAGATCAAATGGACGGTGGAGATTTCAC 476
||||||||| | ||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 417 CGTTAGCCCTATGACGGAGAATTTAACAGAATCAGATCAAATGGACGGTGGAGATTTCAC 476
Query 477 TGGATTAGCCGAATCAATGGCAGAGTTCGTCGAACGTCAAACAAAACTCACCGTTTGTTC 536
||||||||||||||||||||||||||||||||||||| ||| |||||||| ||| || |
Sbjct 477 TGGATTAGCCGAATCAATGGCAGAGTTCGTCGAACGTTTAACCAAACTCACTGTTGGTCC 536
Query 537 AATCCAACGACCACCACTCATATCAAAGACACAAATCGGAATCATCGTTGCTA-TAATCA 595
|||||||||||| || ||| |||| |||||||||||||||||||| || || | | |||
Sbjct 537 AATCCAACGACCGCCGCTCCTATCGAAGACACAAATCGGAATCATAGTAGC-ATTTCTCA 595
Query 596 TAATCTCGACTCCGATTCTCATCAAGAAGATTCTAAAAGGAGAAACACTTCTCCATGACC 655
||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||
Sbjct 596 TAATCTCGACTCCGATTCTAATCAAGAAGATTCTAAAAGGAGAAACGCTTCTCCATGACC 655
Query 656 ATAGAATCTGGTTAGTTGGCGCGGTTTTCGTCTACTTCTTCAGCGTCTCGGGGACAATGC 715
||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 656 GTAGAATCTGGTTAGTCGGCGCGGTTTTCGTCTACTTCTTCAGCGTCTCGGGGACAATGC 715
Query 716 ATAACATCATTAGAGAAATGCCAATGTATATCAAAGATTATGAAGATTCAAGTAAGTTTG 775
||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 716 ATAACATTATTAGAGAAATGCCAATGTATATCAAAGATTATGAAGATTCAAATAAGTTTG 775
Query 776 TTTTCTTTATAGAAGAATCAGAGATGCAGCTTGGAGCAGAAGGTTTCTTTGTAGGGTTTT 835
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 776 TTTTCTTTATCGAAGAATCAGAGATGCAGCTTGGAGCAGAAGGTTTCTTTGTAGGGTTTT 835
Query 836 TGTATACTGTTGTTGGATTGCTTTTGGCGTTTGTTACTAATGTAG-TTGTACGAGTCAAG 894
||||||||||||||||||||||||||||||||||||||||||| | |||| ||||| |||
Sbjct 836 TGTATACTGTTGTTGGATTGCTTTTGGCGTTTGTTACTAATGT-GCTTGTTCGAGTTAAG 894
Query 895 AAACTCGATGAGCAAAGGATGGCTATGCTTTTGGCTCTGTCTATATCGTTTTGGGCTGTG 954
|||||||| ||||| |||||||||||||||||| ||||||| ||||||||||||||||||
Sbjct 895 AAACTCGAAGAGCAGAGGATGGCTATGCTTTTGTCTCTGTCGATATCGTTTTGGGCTGTG 954
Query 955 AGGAAAGTTGTTTACTTGGATAATTGGAAGACTGGTTATGAAATTTACCCATATTGGCCA 1014
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 955 AGGAAAGTTGTTTACTTGGATAATTGGAAGACTGGATATGAAATTTACCCATATTGGCCA 1014
Query 1015 TC 1016
||
Sbjct 1015 TC 1016
> Ahg924835 jgi|Araly1|924835|scaffold_200396.1
Length=1084
Score = 436 bits (236), Expect = 1e-121
Identities = 747/984 (76%), Gaps = 74/984 (8%)
Strand=Plus/Plus
Query 79 GATTCAGATC-TCAAAAACGAACTAGTCTCCCTCCGATCAAC-CGCCGAATCAGGCGTGA 136
|||||||||| || |||||||| || || ||| ||||||| | |||||||||||| |
Sbjct 114 GATTCAGATCTTC-TCAACGAACTTGTATCTCTCAGATCAACAAG-CGAATCAGGCGTAA 171
Query 137 TCTCCT-TCAACAACGA-CGACGTTTCCAAATTCATAACCTCCG-TATCCACTCCTAGAC 193
|| | | || | || | || | || |||||| ||||||||| | ||||||||| | |
Sbjct 172 TC-CATCTCGATGACCATGGA-ATCTCAAAATTCCTAACCTCCGCT-TCCACTCCTCGTC 228
Query 194 CTTACTCACTCA-TCATCTTCTTCGACGCCGTTCATCTCCACGGCAATAGCCAGCTACGT 252
||||||| | | || ||||||||||||| ||| |||||| |||| | | |||| |||
Sbjct 229 CTTACTC-GTTACTCGTCTTCTTCGACGCAACTCAGCTCCACAGCAAAAACGAGCTTCGT 287
Query 253 CTTCCAGAGTTCCGCCGCGAATTCAGAC-TCGTCTCCGCCACTTTCATCACCAACAACAA 311
|||| |||| |||| ||||||||| | | |||||||||| | ||| || | |||||
Sbjct 288 CTTCAAGAGCTCCGTCGCGAATTC-GGCATCGTCTCCGCTTCATTCCTC-GC--TAACAA 343
Query 312 CAATGAATCT-AACGGCACAAAGCTCTTCTTCTGCGAGATCGAATCAACTCACTC-CGAG 369
||||| |||| || || || ||||| ||||||||||||||||| | | || || | |
Sbjct 344 CAATGGATCTGAA-GGAACTAAGCTTTTCTTCTGCGAGATCGAGTTTTCACAGTCTC-AA 401
Query 370 GCTTCTTTCC-GCCGCTTCGCCGTCGA-GTCACTACCACACATTTC-CCTCGTTAGCCCC 426
|||| |||| | | ||| | ||| | | | |||| |||| ||| || || || ||
Sbjct 402 TCTTCGTTCCAG-CTCTTTGGCGTTAACG-CTTTACCTCACA-TTCGTCTTGTAAGTCCT 458
Query 427 ACGACAGAGAATTTAAC---A-GAATCAGATCAAATGGA-CGGTGGAGATTTCACTGGAT 481
||| | |||| | || | ||||| | ||||||||| | | | |||| | || |||
Sbjct 459 TCGATATCGAATCT-ACGTGATGAATCTGGTCAAATGGATCAATCG-GATTACTCTAGAT 516
Query 482 TAGCCGAATCAATGGCAGAGTTCGTCGAACGTCAAACAAAACTCACCGTTTGTTCAATCC 541
|||| ||||||||||| ||||||||||| | | ||| ||||||| || || | || |
Sbjct 517 TAGCGGAATCAATGGCTGAGTTCGTCGAGCAACGAACTAAACTCAAGGTCGGTCCTATTC 576
Query 542 AACGACCACCAC-TCATATC-AAAGACACAAATCGGAATCATCGTTGC-TATAATCATAA 598
|||| ||||| | || | || ||| | || ||||| | |||||||| | | ||| | |
Sbjct 577 AACGTCCACCGCTTC-TTTCGAAA-CCGCAGATCGGCGTTATCGTTGCGT-TGATCGTTA 633
Query 599 TCTCGACTCCGATTCTCATCAAGAAGA-TTCTAAAAGGAGAAAC-ACTTCTCCATGACCA 656
|| | |||||| || | ||||| | || |||||||||||||||| | |||| ||||| |
Sbjct 634 TCGCTACTCCGTTTATTATCAA-ACGAGTTCTAAAAGGAGAAACTA-TTCTTCATGA-TA 690
Query 657 -TAGAATCTGGTTAGT-TGGCGCGGTTTTCGTCTACTTCTTCAGCGTCT-CGGGGACAAT 713
|||| | |||||| | ||| || | ||| | |||||||| ||||| | | || |||||
Sbjct 691 GTAGACTTTGGTTA-TCTGGTGCTATCTTCATTTACTTCTTTAGCGT-TGCTGGTACAAT 748
Query 714 GCATAACATCATTA-GAGAAATGCCAATGTAT-ATCAAAGATTATGAA-GATTC-AAGTA 769
||| ||||| || | || ||||||| |||| | || ||||| | || ||| | || ||
Sbjct 749 GCACAACATTATCAGGA-AAATGCCGATGTTTCTTC-AAGATCGT-AACGATCCGAA-TA 804
Query 770 AGTTTGTTTTCTTTATA-GAAGAATC-AGAGATGCAGCTTGGAGCAGAAGG-TTTCTTTG 826
|| |||| |||||| || ||| ||| || |||||||||||||| ||||| ||| ||
Sbjct 805 AGCTTGTGTTCTTT-TACCAAGGATCTGGA-ATGCAGCTTGGAGCTGAAGGATTT-GCTG 861
Query 827 TAGGGTTTTTGTATACTGTTGTTGGATTGCTTTTGGCGTTTGTTACTAATGTAG-TTGTA 885
| || || |||||||| ||||||||||||||||||||||||||||| ||||| | ||||
Sbjct 862 TTGGATTCTTGTATACCGTTGTTGGATTGCTTTTGGCGTTTGTTACCAATGT-GCTTGTT 920
Query 886 CGAGTCAAGAAACTCGA-TG-AGCAAAGGA-TGGCTATGCTTTTGGCTCTG-TCTATATC 941
||||| ||||| || | || | |||| || || ||||||||||||| || || |||||
Sbjct 921 CGAGTGAAGAATCT-TACTGCA-CAAA-GATTGATTATGCTTTTGGCTTTGTTC-ATATC 976
Query 942 GTTTTGGGCTGTGAGGAAAGTTGTTTACTTGGATAATTGGAAGACTGGTTATGAAATTTA 1001
||| |||||||||| ||||||||||||||||||||||||||||||||| || | |||| |
Sbjct 977 GTTCTGGGCTGTGAAGAAAGTTGTTTACTTGGATAATTGGAAGACTGGATACGGAATTCA 1036
Query 1002 CCCATATTGGCCATCGAGTTGGCG 1025
|| ||||||||||||||||||||
Sbjct 1037 TCCGTATTGGCCATCGAGTTGGCG 1060
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 38389777419
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5